Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_J10
(626 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g54290.1 68414.m06189 eukaryotic translation initiation facto... 131 4e-31
At4g27130.1 68417.m03899 eukaryotic translation initiation facto... 129 2e-30
At5g54760.1 68418.m06820 eukaryotic translation initiation facto... 128 2e-30
At5g54940.2 68418.m06843 eukaryotic translation initiation facto... 124 5e-29
At5g54940.1 68418.m06842 eukaryotic translation initiation facto... 124 5e-29
At5g11900.1 68418.m01392 eukaryotic translation initiation facto... 35 0.038
At1g05530.1 68414.m00567 UDP-glucoronosyl/UDP-glucosyl transfera... 35 0.051
At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein ... 32 0.27
At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein ... 32 0.36
At2g15345.1 68415.m01755 expressed protein 30 1.4
At5g44180.1 68418.m05406 homeobox transcription factor, putative... 28 4.4
At4g18750.1 68417.m02771 pentatricopeptide (PPR) repeat-containi... 28 5.8
At3g42060.1 68416.m04315 myosin heavy chain-related 28 5.8
At1g63470.1 68414.m07177 DNA-binding family protein contains a A... 28 5.8
At1g63430.1 68414.m07173 leucine-rich repeat transmembrane prote... 28 5.8
At4g25790.1 68417.m03711 allergen V5/Tpx-1-related family protei... 27 7.7
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 27 7.7
At1g24120.1 68414.m03043 DNAJ heat shock protein, putative simil... 27 7.7
>At1g54290.1 68414.m06189 eukaryotic translation initiation factor
SUI1, putative similar to P|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 131 bits (316), Expect = 4e-31
Identities = 59/110 (53%), Positives = 77/110 (70%)
Frame = +3
Query: 120 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 299
+ +Q FDPFADA VH+R+QQRNGRK+LTTVQGL EY KI++
Sbjct: 4 LEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDL 63
Query: 300 KKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 449
KKEF CNGTVV+ E G+V+QLQGDQR+N+ +L ++GLVK + +K+HGF
Sbjct: 64 KKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
>At4g27130.1 68417.m03899 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 129 bits (311), Expect = 2e-30
Identities = 58/102 (56%), Positives = 74/102 (72%)
Frame = +3
Query: 144 FDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNG 323
FDPFADA VH+R+QQRNGRK+LTTVQGL EY KI++ KKEF CNG
Sbjct: 12 FDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNG 71
Query: 324 TVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 449
TVV+ E G+V+QLQGDQR+N+ +L ++GLVK + +K+HGF
Sbjct: 72 TVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
>At5g54760.1 68418.m06820 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 128 bits (310), Expect = 2e-30
Identities = 58/102 (56%), Positives = 74/102 (72%)
Frame = +3
Query: 144 FDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNG 323
FDPFADA VH+R+QQRNGRK+LTTVQGL EY KI++ KKEF CNG
Sbjct: 12 FDPFADANVEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNG 71
Query: 324 TVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 449
TVV+ E G+V+QLQGDQR+N+ +L ++GLVK + +K+HGF
Sbjct: 72 TVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
>At5g54940.2 68418.m06843 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 112
Score = 124 bits (299), Expect = 5e-29
Identities = 53/110 (48%), Positives = 81/110 (73%)
Frame = +3
Query: 120 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 299
+ IQ + +DPFA+A S ++ +H+RIQQRNG+K+LTTVQGL EY ++I++
Sbjct: 4 LDIQIPSAYDPFAEAKDSDAPGAKEN-IHIRIQQRNGKKSLTTVQGLKKEYSYERILKDL 62
Query: 300 KKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 449
KK+F CNG VV+ E G+++QLQGDQR+ + Q+L ++G+ K +Q+K+HGF
Sbjct: 63 KKDFCCNGNVVQDKELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHGF 112
>At5g54940.1 68418.m06842 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 112
Score = 124 bits (299), Expect = 5e-29
Identities = 53/110 (48%), Positives = 81/110 (73%)
Frame = +3
Query: 120 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 299
+ IQ + +DPFA+A S ++ +H+RIQQRNG+K+LTTVQGL EY ++I++
Sbjct: 4 LDIQIPSAYDPFAEAKDSDAPGAKEN-IHIRIQQRNGKKSLTTVQGLKKEYSYERILKDL 62
Query: 300 KKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 449
KK+F CNG VV+ E G+++QLQGDQR+ + Q+L ++G+ K +Q+K+HGF
Sbjct: 63 KKDFCCNGNVVQDKELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHGF 112
>At5g11900.1 68418.m01392 eukaryotic translation initiation factor
SUI1 family protein similar to SP|O43583
Density-regulated protein (DRP1 protein) (Smooth muscle
cell associated protein-3) {Homo sapiens}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 198
Score = 35.1 bits (77), Expect = 0.038
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +3
Query: 222 RNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQW 398
RN RK +T V+GL L + K+FA +VV+ P E + +QGD +I ++
Sbjct: 114 RNKRKCITIVKGLELFGIKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDIIYDIVEF 173
Query: 399 LTKSGLVKPEQ 431
+T + PE+
Sbjct: 174 ITDTWPDVPER 184
>At1g05530.1 68414.m00567 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 455
Score = 34.7 bits (76), Expect = 0.051
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Frame = +3
Query: 84 VSLKQRASTFNRMSIQNLN--TF-DPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLT 245
+S+ R+ N +++NL+ TF D F D + S+ DDVQ+ LVH +RNG K L+
Sbjct: 41 LSVIHRSMIPNHNNVENLSFLTFSDGFDDGVISNTDDVQNRLVHF---ERNGDKALS 94
>At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 812
Score = 32.3 bits (70), Expect = 0.27
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Frame = +1
Query: 250 CRACPRNM--T*RRSCGHARRSSRATVPLWSTRSTARCCNCKATSARTFVSGSL 405
C C N+ SCGH S V L RCC CK S FV+ +L
Sbjct: 5 CAVCADNLEWVAYGSCGHREVCSTCVVRLRFVLDDPRCCICKTESPIVFVTKAL 58
>At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein
contains Prosite PS00028: Zinc finger, C2H2 type, domain
Length = 745
Score = 31.9 bits (69), Expect = 0.36
Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 3/103 (2%)
Frame = +1
Query: 250 CRACPRNM--T*RRSCGHARRSSRATVPLWSTRSTARCCNCKATSARTFVSGSLNRAL*S 423
C C N+ SCGH S V L + RCC CK FV+ +L +
Sbjct: 5 CAVCAENLEWVGYGSCGHREVCSTCVVRLRFILNDRRCCICKTECPVVFVTKALGDYTKT 64
Query: 424 PSN*KFTAFRPPRTYHVQKILYYAR-RLRVINLNKYVSRRHRC 549
S+ T P+ V Y+ + +LN Y + C
Sbjct: 65 ISDFSTTFPSVPKEGRVGSFWYHEETNVYFDDLNHYTRIKAMC 107
>At2g15345.1 68415.m01755 expressed protein
Length = 121
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = +3
Query: 195 GLVHVRIQQ--RNGRKTLTTVQGL--SSEYD-LKKIVRACKKEFACNGTVVE 335
GLV++ QQ R G K L ++GL + Y LKK R+C KE+ + +E
Sbjct: 3 GLVNMVYQQTERLGYKNLEMIKGLDRTENYSKLKKYYRSCVKEYELSNKAIE 54
>At5g44180.1 68418.m05406 homeobox transcription factor, putative
similar to homeobox transcription factor Hox7/homeotic
protein Hox7 (GI:19486) {Lycopersicon peruvianum};
similar to GP|4165087| Williams-Beuren syndrome deletion
transcript 9 [Homo sapiens]; contains Pfam PF02791: DDT
domain and Pfam PF00046: Homeobox domain
Length = 1694
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2
Query: 101 SIYVQSYVHPESEHIRPIRRCYQ 169
+IYV+S V P +H+RPIR YQ
Sbjct: 191 NIYVRSDVKPIKDHVRPIRE-YQ 212
>At4g18750.1 68417.m02771 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 871
Score = 27.9 bits (59), Expect = 5.8
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Frame = +2
Query: 449 LGRHAHTMFKKYCIMRGDYAL*TLINMYLEGTD------VYREESSRPV 577
LGR H++ K C R D TL++MY + D V+RE S R V
Sbjct: 314 LGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSV 362
>At3g42060.1 68416.m04315 myosin heavy chain-related
Length = 712
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -3
Query: 453 PKSRELLVARASQGPI**ATDKCSRAGRLAVAAPRRTPGAPQRY 322
P+SR ++A+ PI + +C R R + PR PGA +R+
Sbjct: 663 PESRMKILAKGR--PIWQSKGRCDRGSRDSCKRPRPLPGAAERW 704
>At1g63470.1 68414.m07177 DNA-binding family protein contains a AT
hook motif (DNA binding motifs with a preference for A/T
rich regions), Pfam:PF02178
Length = 378
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -3
Query: 333 PQRYRCTRTPSCMP--ARSSSSHIPRTSPAPWSMFYARSAAGFGRALDHLARRP 178
P TP P A S+ H P+ PA + S +G GR+LD +R P
Sbjct: 317 PTNSEMETTPGSAPEAAASTGQHTPQNFPAQGMSGWPVSGSGSGRSLDS-SRNP 369
>At1g63430.1 68414.m07173 leucine-rich repeat transmembrane protein
kinase, putative contains Pfam profiles: PF00069
Eukaryotic protein kinase domain, PF00560 Leucine Rich
Repeat; contains 1 predicted transmembrane domain
Length = 664
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 273 DLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENI 389
++ R E+A NGT+ EH YGE + +R I
Sbjct: 429 EISPFTRMLVFEYASNGTLYEHLHYGEAALVSWARRMKI 467
>At4g25790.1 68417.m03711 allergen V5/Tpx-1-related family protein
similar to SP|Q40374 Pathogenesis-related protein PR-1
precursor {Medicago truncatula}; contains Pfam profile
PF00188: SCP-like extracellular protein
Length = 210
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 545 DVYREESSRPVRPLAPPCLANP 610
D YR RP+ P PP +A P
Sbjct: 27 DYYRHRPQRPITPSPPPYVAKP 48
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 333 PQRYRCTRTPSCMPARSSSSHIPRTSPAP 247
P++ RT SC+PAR +S PR P
Sbjct: 224 PEKRMYNRTVSCLPARPFNSGKPREQQQP 252
>At1g24120.1 68414.m03043 DNAJ heat shock protein, putative similar
to Altered Response to Gravity [Arabidopsis thaliana]
GI:4249662; contains Pfam profile PF00226 DnaJ domain
Length = 436
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 52 SYIVEVRCIAAFH*NKEHLRSI 117
SY ++V C AAF KE LRS+
Sbjct: 279 SYTIQVLCAAAFTQEKEDLRSV 300
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,163,593
Number of Sequences: 28952
Number of extensions: 297956
Number of successful extensions: 862
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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