Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J09
         (416 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    27   1.2  
SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    27   1.5  
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    25   4.7  
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.2  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    24   8.2  
SPAPJ695.01c |||S. pombe specific UPF0321 family protein 3|Schiz...    24   8.2  
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    24   8.2  

>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +1

Query: 1   GHSIDVVISGKTPEDKMAGILLEARQGDKI-VGTWTVSPDDTFSQPLNCGEPNNAVTHKM 177
           G S DVV+     +D     L +A +  K  V   ++    +  +PL  GE  +   HK+
Sbjct: 432 GASSDVVVIDDEEDDIENRPLNQALKASKAAVSNASLLQSSSLDRPL-LGEMKDK-NHKV 489

Query: 178 HAKELDRQTVSYPWT 222
               LD   +SYPW+
Sbjct: 490 LMPSLDDPMLSYPWS 504


>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +1

Query: 286 FWVGIESAPVKVLSH*IMSVIITYLMST 369
           F +GI++A + VL+H I +VI+T   S+
Sbjct: 321 FVIGIQNAEIPVLNHIINAVILTSACSS 348


>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +1

Query: 106 VSPDDTFSQPLNCGEPNNAVTHKMHAKELDRQTVSYPWTAPKDLEGDVVFKVTI 267
           ++P D   +PL   EP   VT  +  K      VS P  AP     DV F  +I
Sbjct: 67  LNPKDELEEPLFSEEPLFPVTTSIPTK----TAVSKPKIAPTSAAKDVTFSSSI 116


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 254 SRSPLSRATPSSGSESNQP 310
           SR P  RATPS+G +   P
Sbjct: 435 SRQPTVRATPSTGKQIEPP 453


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 12/60 (20%), Positives = 32/60 (53%)
 Frame = +1

Query: 100 WTVSPDDTFSQPLNCGEPNNAVTHKMHAKELDRQTVSYPWTAPKDLEGDVVFKVTIVKSY 279
           W+ S ++  ++ ++  +  +A    +  ++L   TVS PW +P +   +   ++ IV+++
Sbjct: 698 WSYSEENFLNKKMSSEQAEDAAY--VRTQQLIPPTVSPPWNSPSNNYTESDLELGIVRTF 755


>SPAPJ695.01c |||S. pombe specific UPF0321 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 410 YNCCIFLMFVIQINVDI 360
           Y CC+FL F++  NVD+
Sbjct: 6   YICCLFLKFIL-ANVDL 21


>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 242 ATLCSRSPLSRATPSSGSES 301
           AT  S SP++ A P SGS S
Sbjct: 633 ATSASDSPITSAQPQSGSNS 652


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,836,322
Number of Sequences: 5004
Number of extensions: 37922
Number of successful extensions: 85
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)