BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_J09 (416 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 27 1.2 SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 27 1.5 SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar... 25 4.7 SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.2 SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 24 8.2 SPAPJ695.01c |||S. pombe specific UPF0321 family protein 3|Schiz... 24 8.2 SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch... 24 8.2 >SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1328 Score = 27.1 bits (57), Expect = 1.2 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%) Frame = +1 Query: 1 GHSIDVVISGKTPEDKMAGILLEARQGDKI-VGTWTVSPDDTFSQPLNCGEPNNAVTHKM 177 G S DVV+ +D L +A + K V ++ + +PL GE + HK+ Sbjct: 432 GASSDVVVIDDEEDDIENRPLNQALKASKAAVSNASLLQSSSLDRPL-LGEMKDK-NHKV 489 Query: 178 HAKELDRQTVSYPWT 222 LD +SYPW+ Sbjct: 490 LMPSLDDPMLSYPWS 504 >SPAC869.10c |||proline specific permease |Schizosaccharomyces pombe|chr 1|||Manual Length = 552 Score = 26.6 bits (56), Expect = 1.5 Identities = 12/28 (42%), Positives = 20/28 (71%) Frame = +1 Query: 286 FWVGIESAPVKVLSH*IMSVIITYLMST 369 F +GI++A + VL+H I +VI+T S+ Sbjct: 321 FVIGIQNAEIPVLNHIINAVILTSACSS 348 >SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosaccharomyces pombe|chr 1|||Manual Length = 556 Score = 25.0 bits (52), Expect = 4.7 Identities = 18/54 (33%), Positives = 23/54 (42%) Frame = +1 Query: 106 VSPDDTFSQPLNCGEPNNAVTHKMHAKELDRQTVSYPWTAPKDLEGDVVFKVTI 267 ++P D +PL EP VT + K VS P AP DV F +I Sbjct: 67 LNPKDELEEPLFSEEPLFPVTTSIPTK----TAVSKPKIAPTSAAKDVTFSSSI 116 >SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 608 Score = 24.6 bits (51), Expect = 6.2 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = +2 Query: 254 SRSPLSRATPSSGSESNQP 310 SR P RATPS+G + P Sbjct: 435 SRQPTVRATPSTGKQIEPP 453 >SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3|||Manual Length = 1315 Score = 24.2 bits (50), Expect = 8.2 Identities = 12/60 (20%), Positives = 32/60 (53%) Frame = +1 Query: 100 WTVSPDDTFSQPLNCGEPNNAVTHKMHAKELDRQTVSYPWTAPKDLEGDVVFKVTIVKSY 279 W+ S ++ ++ ++ + +A + ++L TVS PW +P + + ++ IV+++ Sbjct: 698 WSYSEENFLNKKMSSEQAEDAAY--VRTQQLIPPTVSPPWNSPSNNYTESDLELGIVRTF 755 >SPAPJ695.01c |||S. pombe specific UPF0321 family protein 3|Schizosaccharomyces pombe|chr 1|||Manual Length = 117 Score = 24.2 bits (50), Expect = 8.2 Identities = 9/17 (52%), Positives = 13/17 (76%) Frame = -1 Query: 410 YNCCIFLMFVIQINVDI 360 Y CC+FL F++ NVD+ Sbjct: 6 YICCLFLKFIL-ANVDL 21 >SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 683 Score = 24.2 bits (50), Expect = 8.2 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = +2 Query: 242 ATLCSRSPLSRATPSSGSES 301 AT S SP++ A P SGS S Sbjct: 633 ATSASDSPITSAQPQSGSNS 652 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,836,322 Number of Sequences: 5004 Number of extensions: 37922 Number of successful extensions: 85 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 83 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 85 length of database: 2,362,478 effective HSP length: 66 effective length of database: 2,032,214 effective search space used: 146319408 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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