Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_J09
(416 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g02120.1 68415.m00148 plant defensin-fusion protein, putative... 29 0.95
At5g50200.3 68418.m06216 expressed protein similar to unknown pr... 28 2.2
At5g50200.2 68418.m06218 expressed protein similar to unknown pr... 28 2.2
At5g50200.1 68418.m06217 expressed protein similar to unknown pr... 28 2.2
At5g06580.1 68418.m00743 FAD linked oxidase family protein simil... 27 3.8
At4g04920.1 68417.m00715 expressed protein 27 6.7
At3g55480.2 68416.m06162 adaptin family protein similar to AP-3 ... 27 6.7
At3g55480.1 68416.m06161 adaptin family protein similar to AP-3 ... 27 6.7
At1g18550.1 68414.m02314 kinesin motor protein-related contains ... 27 6.7
At5g22900.1 68418.m02678 cation/hydrogen exchanger, putative (CH... 26 8.9
At4g01910.1 68417.m00251 DC1 domain-containing protein contains ... 26 8.9
At3g30240.1 68416.m03821 hypothetical protein 26 8.9
>At2g02120.1 68415.m00148 plant defensin-fusion protein, putative
(PDF2.1) plant defensin protein family member, personal
communication, Bart Thomma
(Bart.Thomma@agr.kuleuven.ac.be); contains a
gamma-thionin family signature (PDOC00725)
Length = 77
Score = 29.5 bits (63), Expect = 0.95
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -2
Query: 103 SKCRRSCHPDELPGG-CRPFCLRVFC 29
+ C CH + PGG CR F R FC
Sbjct: 48 TNCENVCHNEGFPGGDCRGFRRRCFC 73
>At5g50200.3 68418.m06216 expressed protein similar to unknown
protein (pir||T05562) isoform contains a non-consensus
AT acceptor splice site at intron 1
Length = 210
Score = 28.3 bits (60), Expect = 2.2
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 169 HKMHAKELDRQTVSYPWTAPKDLEGDVVFKVTIVKSYAVFWVGIESA 309
HK+ AK D+ S WT +D+ F V++YAV +G E A
Sbjct: 110 HKIIAKPYDKTLQSTTWTLERDIPTGTYF----VRAYAVDAIGHEVA 152
>At5g50200.2 68418.m06218 expressed protein similar to unknown
protein (pir||T05562) isoform contains a non-consensus
AT acceptor splice site at intron 1
Length = 210
Score = 28.3 bits (60), Expect = 2.2
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 169 HKMHAKELDRQTVSYPWTAPKDLEGDVVFKVTIVKSYAVFWVGIESA 309
HK+ AK D+ S WT +D+ F V++YAV +G E A
Sbjct: 110 HKIIAKPYDKTLQSTTWTLERDIPTGTYF----VRAYAVDAIGHEVA 152
>At5g50200.1 68418.m06217 expressed protein similar to unknown
protein (pir||T05562) isoform contains a non-consensus
AT acceptor splice site at intron 1
Length = 210
Score = 28.3 bits (60), Expect = 2.2
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 169 HKMHAKELDRQTVSYPWTAPKDLEGDVVFKVTIVKSYAVFWVGIESA 309
HK+ AK D+ S WT +D+ F V++YAV +G E A
Sbjct: 110 HKIIAKPYDKTLQSTTWTLERDIPTGTYF----VRAYAVDAIGHEVA 152
>At5g06580.1 68418.m00743 FAD linked oxidase family protein similar
to SP|Q12627 from Kluyveromyces lactis and SP|P32891
from Saccharomyces cerevisiae; contains Pfam FAD linked
oxidases, C-terminal domain PF02913, Pfam FAD binding
domain PF01565
Length = 567
Score = 27.5 bits (58), Expect = 3.8
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 140 LRGCEKV-SSGLTVQVPTILSP*RASRRMPAILSSGVLPL 24
LR C ++ S+ + T+LSP + RR+P SS + PL
Sbjct: 17 LRPCRQLHSTPKSTGDVTVLSPVKGRRRLPTCWSSSLFPL 56
>At4g04920.1 68417.m00715 expressed protein
Length = 1250
Score = 26.6 bits (56), Expect = 6.7
Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 3/98 (3%)
Frame = +1
Query: 16 VVISGKTPEDKMAGILLEARQGDKIVGTWTVSPDDTFSQPLNCGEPNNAVTHKMHAKELD 195
VV+ K E + G + + VSP F L +PN+ + HKM EL
Sbjct: 52 VVVEEKLLEKSVDGEKEDDNSSSSNMEIDPVSPATVFCVKLK--QPNSNLLHKMSVPELC 109
Query: 196 RQTVSYPWTAPKD---LEGDVVFKVTIVKSYAVFWVGI 300
R + W + + ++ K+ FW+ I
Sbjct: 110 RNFSAVAWCGKLNAIACASETCARIPSSKANTPFWIPI 147
>At3g55480.2 68416.m06162 adaptin family protein similar to AP-3
complex beta3A subunit, Homo sapiens, SP|O00203;
contains Pfam profile: PF01602 Adaptin N terminal region
Length = 987
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 303 ISPRKGSKSLNHVS-HHHLLDVNINLYYKH*K 395
+ P + +K L V HHHLL + + L+Y K
Sbjct: 800 LEPHQSTKRLIQVRFHHHLLPMRLTLHYNEKK 831
>At3g55480.1 68416.m06161 adaptin family protein similar to AP-3
complex beta3A subunit, Homo sapiens, SP|O00203;
contains Pfam profile: PF01602 Adaptin N terminal region
Length = 987
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 303 ISPRKGSKSLNHVS-HHHLLDVNINLYYKH*K 395
+ P + +K L V HHHLL + + L+Y K
Sbjct: 800 LEPHQSTKRLIQVRFHHHLLPMRLTLHYNEKK 831
>At1g18550.1 68414.m02314 kinesin motor protein-related contains
similarity to kinesin-related protein GI:4493964 from
[Plasmodium falciparum]
Length = 799
Score = 26.6 bits (56), Expect = 6.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 267 CQELRRLLGRNRISPRKGSKSLNHVSH 347
C+E RR++ R + P++ K L SH
Sbjct: 642 CKETRRIVTRGSLRPKEKEKELKSPSH 668
>At5g22900.1 68418.m02678 cation/hydrogen exchanger, putative (CHX3)
monovalent cation:proton antiporter family 2 (CPA2)
member, PMID:11500563
Length = 822
Score = 26.2 bits (55), Expect = 8.9
Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +1
Query: 244 DVVFKVTIVKSYAVFW----VGIESAPVKVLSH*IMSV-IITYLMSTLIC 378
++VF +T SY +FW V +++ ++ +++ + + L+STL+C
Sbjct: 116 EIVFSLTAACSYMMFWFLMGVKMDTGLIRTTGRKAITIGLSSVLLSTLVC 165
>At4g01910.1 68417.m00251 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 651
Score = 26.2 bits (55), Expect = 8.9
Identities = 16/53 (30%), Positives = 19/53 (35%)
Frame = -2
Query: 196 CLILWHASCGSRRYLVHHS*GVARRYHRGLRSKCRRSCHPDELPGGCRPFCLR 38
C + +H C V+H V YH K PD G CR C R
Sbjct: 155 CDLTFHVDCVWHPSEVYHPLEVNHSYHPSHPLKLHTGQRPDYSDGACR-LCAR 206
>At3g30240.1 68416.m03821 hypothetical protein
Length = 189
Score = 26.2 bits (55), Expect = 8.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 189 FFGMHLVGHGVIWFTTVEG 133
FF +LVGH + FT+VEG
Sbjct: 84 FFAENLVGHALDSFTSVEG 102
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,766,764
Number of Sequences: 28952
Number of extensions: 210713
Number of successful extensions: 508
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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