Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J08
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    29   0.77 
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    29   0.77 
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po...    28   1.0  
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    27   3.1  
SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.1  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    27   3.1  
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    26   4.1  
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy...    26   5.5  
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    26   5.5  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    25   7.2  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    25   7.2  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   9.5  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   9.5  

>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 441 ILQLSSAMILMDSFYQLLMKFIHNSSLIWTLYLRFI 548
           ++ L+ A  L +  YQ        S  +WTLYL F+
Sbjct: 143 VITLTDAHSLFERAYQTCKFHFSKSQCVWTLYLEFL 178


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 123 KVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVE 245
           K L + +      +   YYK+ K Y  +AN D     K VE
Sbjct: 89  KTLGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVE 129


>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
 Frame = +3

Query: 108 VERQKKVLSLFQDVDQVNVDDE-YYKIGKD-YD--VEANIDNYTNKKAVEEFL 254
           VER+K++ +L Q  D + ++DE YY +  D Y+   EA    +TN++ V+E +
Sbjct: 225 VERRKQIYTLAQKHDIIILEDEPYYYLQMDAYEGKPEAADKAFTNEQFVKELI 277


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 276 DHRFCTISRILQQLSYWCSYRCW 208
           D +  T++++ + LS W  YR W
Sbjct: 239 DRKILTVNQVFEILSLWLEYRDW 261


>SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 132

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = +3

Query: 6   KTVLVLAGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKV----LSLFQDVDQVNVDDE 173
           K ++  A +I   +++  +   +H   +D   V  + QK+      S   D D+  V DE
Sbjct: 28  KLIMKFADMIKNARNNEDNEDNHHINYEDESDVGTDEQKQQEGVNSSAVSDTDESAVSDE 87

Query: 174 YYKIGKDYDVEA 209
           + +I +++ ++A
Sbjct: 88  FMQIKEEFPMKA 99


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 141 QDVDQVNVDDEYYKIGKDYDVEANIDN 221
           Q+V Q+N +DEY +   + D EA IDN
Sbjct: 55  QNVMQMNFEDEYSEFSNE-DDEAEIDN 80


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -3

Query: 283 GERSPILYNFKNSST 239
           GE+SP+L+NFK  +T
Sbjct: 609 GEQSPLLFNFKTKNT 623


>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = +2

Query: 353 YYAKDFETFYKSAAFARVHLNEGQFLYAYYIAVIQRNDTHGFVLPAPYEVYPQFF-VNMD 529
           Y+A  F   +    + R+H    +++     A        GF+   PY ++P FF ++  
Sbjct: 134 YWAHRF--LHHRYVYPRLHKLHHKWIICTPYASHAFKSADGFLQSLPYHLFPFFFPLHKL 191

Query: 530 TLLKIYR-TKMQDGMVHDAKAIN 595
           T L ++        M+HD K I+
Sbjct: 192 TYLALFTFVNFWSIMIHDGKYIS 214


>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 527 DTLLKIYRTKMQDGMV-HDAKAINYGIVKEEEQYVYYANYS 646
           D  + I R K   G V HD   +NY ++   E++ +  N S
Sbjct: 83  DNFVNIIRRKSGGGTVFHDFGNLNYSVLMNREEFSHTENAS 123


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 108 VERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLK 257
           + R+KK+L+L +  D + V+DE Y   +  D   +++    K     FLK
Sbjct: 224 LSRRKKLLALARKYDIIIVEDEPYYFLQMEDYNGSLNPAQQKCDGSTFLK 273


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 464 DTHGFVLPAPYEVY-PQFFVNMDTLLKIYRTKMQDGMVHDAKAIN 595
           D+   + P+P   Y P  +V+ +T + +      D M H AK +N
Sbjct: 129 DSSSVIYPSPPSTYYPNMYVSANTFIPMPYAHYTDNMYH-AKPVN 172


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 506 PQFFVNMDTLLKIYRTKMQDGMVHDAKAINYGIVKEEE 619
           P  F ++D L  +YR+K +D   HD K+    ++ EE+
Sbjct: 116 PSQFSSID-LSWVYRSKEEDDDFHDPKSSVVSLMGEED 152


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +2

Query: 413 NEGQFL-YAYYIAVIQRNDTHG 475
           N G FL YA++  VI+  D+HG
Sbjct: 274 NSGSFLAYAFFSGVIEIYDSHG 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,996
Number of Sequences: 5004
Number of extensions: 54438
Number of successful extensions: 155
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)