Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J08
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53450.2 68414.m06059 expressed protein                             30   1.5  
At1g53450.1 68414.m06058 expressed protein                             30   1.5  
At5g40200.1 68418.m04878 DegP protease, putative contains simila...    29   3.6  
At4g22320.1 68417.m03227 expressed protein                             28   6.2  
At4g01440.1 68417.m00185 nodulin MtN21 family protein similar to...    28   6.2  
At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly...    27   8.2  

>At1g53450.2 68414.m06059 expressed protein
          Length = 453

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = +3

Query: 384 RVPLSLVCT*MRDSSCTHIILQLSSAMILMDSFYQLLMKFIHNSSLIWTLYLRFIALK-- 557
           RV  S   + +RD S +  +LQL   + L DS   LL   +    L+W  Y R   +   
Sbjct: 195 RVEASTSNSPVRDDSSSLFLLQLGPLLFLRDSTL-LLPVHLSKQHLLWYGYDRKKGMHSL 253

Query: 558 CKTVWFTMQRLLIMEL 605
           C  +W   +R L+M +
Sbjct: 254 CPALWSKHRRWLMMSM 269


>At1g53450.1 68414.m06058 expressed protein
          Length = 453

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = +3

Query: 384 RVPLSLVCT*MRDSSCTHIILQLSSAMILMDSFYQLLMKFIHNSSLIWTLYLRFIALK-- 557
           RV  S   + +RD S +  +LQL   + L DS   LL   +    L+W  Y R   +   
Sbjct: 195 RVEASTSNSPVRDDSSSLFLLQLGPLLFLRDSTL-LLPVHLSKQHLLWYGYDRKKGMHSL 253

Query: 558 CKTVWFTMQRLLIMEL 605
           C  +W   +R L+M +
Sbjct: 254 CPALWSKHRRWLMMSM 269


>At5g40200.1 68418.m04878 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 592

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 159 NVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRI 269
           N +DEY K   DYD    +D  T K+A  + L  + I
Sbjct: 542 NCEDEYMKFNLDYDQIVVLDTKTAKEATLDILTTHCI 578


>At4g22320.1 68417.m03227 expressed protein 
          Length = 238

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +3

Query: 87  KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEE 248
           K V    +E QKK ++  ++ D++  DD   KI +D  VE   D     K VEE
Sbjct: 115 KYVPIAVLEEQKKEITEIEEDDKIEEDD---KIDEDNKVEQE-DKVDEDKTVEE 164


>At4g01440.1 68417.m00185 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 365

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +3

Query: 36  ALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIG 188
           ++V S VV    Y F    V  +  E +KK+   F + DQ   DDE YK G
Sbjct: 306 SVVGSGVVIFGLYIFLLGKVRLMKEECEKKLPCRFNEDDQEEDDDEQYKKG 356


>At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly
           identical to GI:9957293; contains Pfam profile: PF01397
           terpene synthase family
          Length = 591

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +3

Query: 111 ERQKKVLSLFQD--VDQVNVDDEYYKIGKDYDVEANIDN 221
           E+ +K+L+  Q   +DQ+   D+  K+G  Y  EA IDN
Sbjct: 82  EKVRKMLNDEQKTYLDQLEFIDDLQKLGVSYHFEAEIDN 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,058,550
Number of Sequences: 28952
Number of extensions: 278579
Number of successful extensions: 704
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)