Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J07
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   1.8  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   5.5  
SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces ...    25   7.3  
SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po...    25   7.3  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   7.3  
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe...    25   9.6  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    25   9.6  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 278  IAVQYNSIFYTVLDYFRDYHFCNLDSTYNMET 183
            +  Q+ ++  +VLDYF + H  NLDS   + T
Sbjct: 3851 VCEQFINLAESVLDYFINVHNSNLDSLSKIST 3882


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = +3

Query: 276 DYTFNNDTSGLVVKWFFKSKSRLVYQ 353
           +++ + + S   ++W+   KSR+V+Q
Sbjct: 236 EFSLSGEISNAAIEWYLLEKSRVVHQ 261


>SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 246

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 276 DYTFNNDTSGLVVKWFFKSK 335
           D  FNND SGL+ K+  ++K
Sbjct: 31  DEAFNNDHSGLIHKYNIRNK 50


>SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/59 (22%), Positives = 30/59 (50%)
 Frame = +3

Query: 171 LLVTCFHVIRGVKITKMVVPEIIQYGVEDAVILDCDYTFNNDTSGLVVKWFFKSKSRLV 347
           ++ T F  + G+   K + PE+I+  +     ++C YT +N T   +++   +  S ++
Sbjct: 341 VIATNFSSVSGMPWIKSMEPEVIKNSISSESSVEC-YTADNLTISEILRLAKEKNSSVI 398


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 124 EGGLTVCR*RIYAQSFCLSPVSMLYVESRL 213
           EGG T+ +   Y Q   L+  S LY+E+ L
Sbjct: 298 EGGATLFKFNYYGQDAYLTQSSQLYLEAAL 327


>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +3

Query: 84  SIVLWYGDSYEMVRRRVDRVSLTHLCTILLLVTCFHVIRGVK 209
           S +++YG   E      DRV    L  I     C+  IR +K
Sbjct: 88  SSLMFYGLMMEFFGYSFDRVGCMELAFISFSAACYFNIRSIK 129


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +1

Query: 133 LTVCR*RIYAQS---FCLSPVSMLYVESRLQKW 222
           LT C+ RI + S   FC+   S +Y++  + KW
Sbjct: 30  LTTCQLRILSLSINAFCVFGASGIYLDKLVNKW 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,803
Number of Sequences: 5004
Number of extensions: 47720
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)