Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J07
         (545 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     31   0.46 
SB_20351| Best HMM Match : I-set (HMM E-Value=1.9e-13)                 30   1.4  
SB_427| Best HMM Match : I-set (HMM E-Value=1.8e-12)                   29   1.9  
SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_5524| Best HMM Match : Glyco_hydro_31 (HMM E-Value=1.7e-10)         28   4.3  
SB_21656| Best HMM Match : C2 (HMM E-Value=0.019)                      28   5.7  
SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  

>SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 618

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 164 NPSACHLFPCYTWSQDYKNGSPGNNPIRCRRC 259
           NP  CH F      +D  +G  G  P RC +C
Sbjct: 314 NPFKCHNFDVEMSEEDSTDGEHGEKPFRCTQC 345


>SB_20351| Best HMM Match : I-set (HMM E-Value=1.9e-13)
          Length = 142

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 22/58 (37%), Positives = 27/58 (46%)
 Frame = +3

Query: 363 GQKPQDIGILRGRVDLTYRASSDPLKMHRALRIIKTNTDISGDYTCVVSTFMDEDSKT 536
           G  P  I  LRG V L  R+S   L     L  +K N   SG YTC  +  +  DSK+
Sbjct: 84  GDTPFHIAWLRGDVILQNRSSDTDL----VLSAVKAND--SGIYTCCTTNSLGSDSKS 135


>SB_427| Best HMM Match : I-set (HMM E-Value=1.8e-12)
          Length = 89

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 21/58 (36%), Positives = 27/58 (46%)
 Frame = +3

Query: 363 GQKPQDIGILRGRVDLTYRASSDPLKMHRALRIIKTNTDISGDYTCVVSTFMDEDSKT 536
           G  P  +  LRG V L  R+S   L     L  +K N   SG YTC  +  +  DSK+
Sbjct: 31  GDTPFHVAWLRGDVILQNRSSDTDL----VLSAVKAND--SGIYTCFTTNTLGSDSKS 82


>SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6119

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 399 RVDLTYRASSDPLKMHRALRIIKTNTDISGDYTCVVSTFM-DEDSKTK 539
           RV  + R   D +     L I  T  D  GDYTC+V   +   +SKTK
Sbjct: 630 RVKDSRRTKCDLVDGEVKLTIKTTRADDQGDYTCIVRNELGSAESKTK 677


>SB_5524| Best HMM Match : Glyco_hydro_31 (HMM E-Value=1.7e-10)
          Length = 718

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 216 KMVVPEIIQYGVEDAVILDCDYTFNNDTSGLVVKW 320
           K  +P+ +Q+G  D ++   D+T+N D    + +W
Sbjct: 523 KYDIPQDVQFGDIDYMVRQLDFTYNKDNFTRLPEW 557


>SB_21656| Best HMM Match : C2 (HMM E-Value=0.019)
          Length = 792

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -1

Query: 296 VIVESIIAVQ-YNSIFYTVLDYFRDYHFCNLDSTYNMETGDKQKDCA*MRQRH 141
           V+VE I  +  + S  +   D F  YHF +   T +    D Q+ C   RQ H
Sbjct: 443 VVVEDIRGLSVFRSTVWGETDCFVQYHFPHQTPTNDALEEDTQQRCTGRRQEH 495


>SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1227

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 165 LCIDASTTHGQPAFAPSHMNHHTTER*IESTVHSPGMT*QKVERS 31
           L  + +++  QPA   + M+H T  R +  T+HSP     +VE +
Sbjct: 70  LATNYNSSWPQPAGNQASMHHSTPGRDVTDTIHSPRADDDEVEEA 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,485,940
Number of Sequences: 59808
Number of extensions: 366647
Number of successful extensions: 978
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)