Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J07
         (545 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14615.1 68417.m02249 expressed protein                             29   2.7  
At3g01100.1 68416.m00015 early-responsive to dehydration protein...    29   2.7  
At3g48810.1 68416.m05330 pentatricopeptide (PPR) repeat-containi...    28   4.7  
At5g22510.1 68418.m02627 beta-fructofuranosidase, putative / inv...    27   8.2  
At1g35330.1 68414.m04379 zinc finger (C3HC4-type RING finger) fa...    27   8.2  

>At4g14615.1 68417.m02249 expressed protein
          Length = 76

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/46 (36%), Positives = 28/46 (60%)
 Frame = +3

Query: 213 TKMVVPEIIQYGVEDAVILDCDYTFNNDTSGLVVKWFFKSKSRLVY 350
           T   V EI+++GV  AV +   YTF N+++   +K F  ++S +VY
Sbjct: 6   TSKGVLEIVKFGVYVAVPIVLMYTFANNSTN--IKKFMGNRSYVVY 49


>At3g01100.1 68416.m00015 early-responsive to dehydration
           protein-related / ERD protein-related low similarity to
           ERD4 protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 703

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 296 VIVESIIAVQYNSIFYTVLDYFRDYHFCNLDSTYNMETGDKQK 168
           V+V  +  V  NSI  TV ++FR+YH  +  S   +   DK K
Sbjct: 191 VLVSGVPLVSGNSISETVENFFREYHSSSYLSHIVVHRTDKLK 233


>At3g48810.1 68416.m05330 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 659

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
 Frame = -2

Query: 436 RGSLD-ALYVRSTRPLSIPIS*GFCPTIH*YTNLDFDLKNHFTTRPDVSLLKV*SQSNIT 260
           RGSLD A+Y+ +    S     G CP +  YTN+   L  H   +   SL+++ S+ N  
Sbjct: 400 RGSLDGAVYIWNKMLTS-----GCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKEN-C 453

Query: 259 ASSTPYW--IISGTTIFVILTPRITWKQVTSRRI--VHRC 152
           A S P +   I G    +    R+ W +   R++   HRC
Sbjct: 454 APSVPTFNAFIKG----LCDAGRLDWAEKVFRQMEQQHRC 489


>At5g22510.1 68418.m02627 beta-fructofuranosidase, putative /
           invertase, putative / saccharase, putative /
           beta-fructosidase, putative similar to neutral invertase
           [Daucus carota] GI:4200165; contains Pfam profile
           PF04853: Plant neutral invertase
          Length = 617

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
 Frame = -2

Query: 223 TIFVILTPRITWKQVTSRRIVHRCVNDTRSTRLRTISYESPYHRTIDRKH----CSLSRN 56
           + FV  TP +++K V+  R   RC N    + +   S+ S       +K     C   ++
Sbjct: 23  SFFVNSTPNLSFKPVSRNRKTVRCTNSHEVSSVPKHSFHSSNSVLKGKKFVSTICKCQKH 82

Query: 55  DVTES 41
           DV ES
Sbjct: 83  DVEES 87


>At1g35330.1 68414.m04379 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 327

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = -2

Query: 364 PTIH*YTNLDFDLKNHFTTR-----PDVSLLKV*SQSNITASSTP 245
           P I  + N D DL+N    R     PDV LL   S SN T ++TP
Sbjct: 186 PFIRPHDNQDMDLENVTARRSVLESPDVRLLDRLSWSNNTGANTP 230


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,958,421
Number of Sequences: 28952
Number of extensions: 243802
Number of successful extensions: 555
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)