Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J06
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0234 + 15187065-15188241,15188316-15188494                       36   0.036
04_03_0649 - 18402976-18403220,18403305-18404499                       35   0.048
03_02_0517 + 9054816-9055655                                           29   3.2  
08_01_0914 + 9010613-9013316,9013537-9013748                           28   5.5  
05_03_0086 + 8279518-8280320,8280923-8281844                           28   7.3  
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965...    27   9.7  
02_05_1001 + 33423562-33424098                                         27   9.7  

>11_04_0234 + 15187065-15188241,15188316-15188494
          Length = 451

 Score = 35.5 bits (78), Expect = 0.036
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 396 YNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQ 500
           ++ +      R AF NS++ LA   GFDG+DL+W+
Sbjct: 129 FSRMASEKNLRRAFINSSIELARANGFDGLDLAWR 163


>04_03_0649 - 18402976-18403220,18403305-18404499
          Length = 479

 Score = 35.1 bits (77), Expect = 0.048
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +3

Query: 384 DPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQ 500
           DP  +  +   P +R AF  +A+ +A + GFDG+D++W+
Sbjct: 131 DPA-FAAMAADPASRAAFIGAAVKVARENGFDGLDVAWR 168


>03_02_0517 + 9054816-9055655
          Length = 279

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 148 ENLKHVCCLRTWSLLFRSAPICCTNLPASKLTHIKWFHSMRIWTL 282
           +++ H  C+  W  L  S P+C   LPA+     +    + IW L
Sbjct: 154 KHVYHQDCILPWLSLRNSCPVCRRELPAAAAPESEADAGLTIWRL 198


>08_01_0914 + 9010613-9013316,9013537-9013748
          Length = 971

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/59 (27%), Positives = 24/59 (40%)
 Frame = +3

Query: 399 NLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLXXXXXXXXXXXXGSFWHSIKKTFG 575
           NL  + P++ +  T     + E+    G DLSW               SF  +I +TFG
Sbjct: 165 NLTCDIPKSLSNLTTLTKFIVERNFIHGQDLSWMGNLTTLTHFVLEGNSFTGNIPETFG 223


>05_03_0086 + 8279518-8280320,8280923-8281844
          Length = 574

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 19/69 (27%), Positives = 26/69 (37%)
 Frame = +3

Query: 402 LLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLXXXXXXXXXXXXGSFWHSIKKTFGTX 581
           LL++ P  R AFT  A  + +   FDG+  +W L              F         T 
Sbjct: 478 LLVKEPHKRIAFTRGATEIKQHPFFDGV--NWALVRSLTPPSVPEPVDFRQYAAAASATT 535

Query: 582 PVDDKESEH 608
           P D K  E+
Sbjct: 536 PKDKKPPEN 544


>04_04_1630 - 34896021-34896143,34896329-34896403,34896500-34896556,
            34897176-34897352,34897426-34897492,34898043-34898101,
            34898188-34898241,34898455-34898604,34898709-34898918,
            34898980-34899039,34899399-34899527,34899616-34899720,
            34899935-34900024,34900630-34900695,34901047-34901115,
            34901348-34901467,34901572-34901634,34901681-34901817,
            34902070-34902160,34902298-34902463,34902700-34904172,
            34905666-34905940,34906322-34906819,34906996-34907145,
            34907840-34907911,34908006-34908266,34908478-34908558,
            34908745-34908996,34909323-34909382,34909602-34909853,
            34910385-34910549,34910589-34910849,34911267-34912307,
            34913398-34913457,34914055-34914165,34914448-34914534,
            34915227-34915300,34915397-34915490,34915644-34915689,
            34916397-34916521
          Length = 2501

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 273  LDIDRAHANYRAITNLKRQFPQLRVFL 353
            + +D   ANYRA+  L + FP ++ F+
Sbjct: 2373 ITLDTPGANYRAVWALSKYFPNVKTFV 2399


>02_05_1001 + 33423562-33424098
          Length = 178

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -2

Query: 292 CARSMSKFSLSETILYVSA--WMPADLYSRWVQNERA 188
           CA   S     E + + S   W PAD+ + WV  ERA
Sbjct: 80  CALVHSHGPYGENLFHGSGVGWAPADVVAAWVSRERA 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,034,355
Number of Sequences: 37544
Number of extensions: 275466
Number of successful extensions: 708
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)