Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J06
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   2e-12
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              63   2e-10
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              58   6e-09
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              36   0.028
SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)        29   3.2  
SB_17161| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)                 28   5.7  
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)           28   7.5  

>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 39/128 (30%), Positives = 66/128 (51%)
 Frame = +3

Query: 117 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHA 296
           +CY+ + +  R    + LP D++P L  CTH++Y  A I   T K+ +   N D      
Sbjct: 401 VCYFTNWAQYRPDPVKFLPKDIDPLL--CTHIVYAFAKIDPATNKIGTYEWNDD-----R 453

Query: 297 NYRAITNLKRQFPQLRVFLDXWRGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGF 476
            Y+ I +LK + P L+  L     + ++     ++ ++ S   RT F +S L L+++Y F
Sbjct: 454 LYKEINDLKLKNPSLKTLLAVGGWNHESGPVSPFSQMVASKSNRTTFISSLLQLSDKYDF 513

Query: 477 DGIDLSWQ 500
           DG DL W+
Sbjct: 514 DGFDLDWE 521


>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 829

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 38/127 (29%), Positives = 61/127 (48%)
 Frame = +3

Query: 120 CYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHAN 299
           CYY + S  R       P D++P L  CTH+L+  A +   T+K+    EN      H  
Sbjct: 25  CYYTNWSQYRPKGGTFWPEDIDPFL--CTHILFSFAKVNQTTHKLDIYEEN-----DHEL 77

Query: 300 YRAITNLKRQFPQLRVFLDXWRGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFD 479
           Y+ I  LK+  P+L+  +    G    E    ++ ++ + + R  F  SA+     +GFD
Sbjct: 78  YQRINALKKINPKLKTQIAVG-GWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTHGFD 136

Query: 480 GIDLSWQ 500
           G+DL W+
Sbjct: 137 GLDLDWE 143



 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 36/128 (28%), Positives = 61/128 (47%)
 Frame = +3

Query: 117 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHA 296
           +CYY + S  R       P D++P L  CTH+++  + +   T+ M    +N D D    
Sbjct: 409 VCYYTNWSQYRPKGGTFWPEDIDPHL--CTHVIHSFSKVNLTTHVMEKYEKN-DFDL--- 462

Query: 297 NYRAITNLKRQFPQLRVFLDXWRGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGF 476
            Y+ I  LK+  P+L+  +    G    E    ++ ++ + + R  F  SA+      GF
Sbjct: 463 -YKRINALKKINPKLKTQIAVG-GWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTNGF 520

Query: 477 DGIDLSWQ 500
           DG+DL W+
Sbjct: 521 DGLDLDWE 528


>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 270

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 36/129 (27%), Positives = 68/129 (52%), Gaps = 1/129 (0%)
 Frame = +3

Query: 117 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGI-QADTYKMVSLNENLDIDRAH 293
           +CY+ + S  R+ +A+  P D+ PA   CTHL+Y  A I Q +   M   N+    D+ +
Sbjct: 22  VCYHTNWSQYRQGRAKFWPEDI-PA-DLCTHLMYSFAKINQKNELAMYEWND----DKLY 75

Query: 294 ANYRAITNLKRQFPQLRVFLDXWRGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYG 473
             + A   LK++ P+L+  L     + +  +   ++ ++++   R  F +S + +   +G
Sbjct: 76  PRFNA---LKQKNPELKTLLAVGGWNHENAN-SPFSRMVKTAATRKVFIDSVIRILRTWG 131

Query: 474 FDGIDLSWQ 500
           FDG+DL W+
Sbjct: 132 FDGLDLDWE 140


>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 2/130 (1%)
 Frame = +3

Query: 117 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHA 296
           +CYY + +  R   A+  P +++P+L  CTH++Y  A + AD  K+     N       A
Sbjct: 25  VCYYTNWAQYR-GLAKYTPDNIDPSL--CTHIVYAFAKMNADNSKLAMFEWN-----DAA 76

Query: 297 NYRAITNLKRQFPQLRVF-LDXWR-GDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQY 470
            Y+ + +LK       +  +  W  G    +D      ++ +   R  F + A+L    +
Sbjct: 77  MYKKVNDLKSSSNMKTLLAVGGWNMGSGPFQD------MVSTASRRKIFIDDAILFLRNH 130

Query: 471 GFDGIDLSWQ 500
            FDG+DL W+
Sbjct: 131 MFDGLDLDWE 140


>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 569

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 17/67 (25%), Positives = 34/67 (50%)
 Frame = +3

Query: 300 YRAITNLKRQFPQLRVFLDXWRGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFD 479
           Y+   +LK + P L+  L    G +       ++ ++ +  +R  F +S++ +  Q+ FD
Sbjct: 187 YKEFNDLKLKNPGLKTLLAVG-GWNHENYKSPFSRMVRTAASRKVFIDSSIAMLRQWNFD 245

Query: 480 GIDLSWQ 500
           G DL W+
Sbjct: 246 GFDLDWE 252


>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
          Length = 561

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 405 LLESPQARTAFTNSALLLAEQYGFDGIDLSWQ 500
           ++ +   R  F + A+L    + FDG+DL W+
Sbjct: 33  MVSTASRRKIFIDDAILFLRNHMFDGLDLDWE 64


>SB_17161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 682

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 303 RAITNLKRQFPQLRVFLDXWRGDDDTEDPQK 395
           R   NLK+   Q+  FLD WR    T DP+K
Sbjct: 451 RRYQNLKQFSGQVVYFLDNWRRSKSTIDPKK 481


>SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)
          Length = 769

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 43  PSPGYWR*RLRLPTTQHHLVAKAKSSATMTARAISENLKHVCCLRTW 183
           P P   R R   PT  H      K + T T R ++  +KHV  +RT+
Sbjct: 316 PEPTDKRRRDEPPTDIHERRRYRKVTKTKTIRTVTTTVKHVVTVRTY 362


>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1670

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 43   PSPGYWR*RLRLPTTQHHLVAKAKSSATMTARAISENLKHVCCLRTW 183
            P P   R R   PT  H      K + T T R ++  +KHV  +RT+
Sbjct: 983  PEPTDKRRRDEPPTDIHERRRYRKVTKTKTIRTVTTTVKHVVTVRTY 1029


>SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)
          Length = 1301

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 582  PVDDKESEHREGFTALVREM 641
            P DDK +E R  FT+L++EM
Sbjct: 1066 PEDDKPAEQRMSFTSLLKEM 1085


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,136,833
Number of Sequences: 59808
Number of extensions: 319126
Number of successful extensions: 935
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)