Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_J06
(644 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein si... 47 1e-05
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si... 41 8e-04
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si... 37 0.010
At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein si... 35 0.053
At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein si... 34 0.070
At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si... 34 0.070
At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein si... 30 1.5
At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finger) fa... 30 1.5
At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR... 29 2.0
At5g50990.1 68418.m06322 pentatricopeptide (PPR) repeat-containi... 29 3.5
At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger) fa... 28 4.6
At3g26920.1 68416.m03368 F-box family protein contains F-box dom... 28 4.6
At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger) fa... 28 4.6
At4g37110.1 68417.m05256 expressed protein 28 6.1
At4g15075.1 68417.m02316 hypothetical protein 28 6.1
At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger) fa... 27 8.1
At2g46160.1 68415.m05740 zinc finger (C3HC4-type RING finger) fa... 27 8.1
At5g42870.1 68418.m05225 lipin family protein contains Pfam prof... 23 8.4
>At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 398
Score = 46.8 bits (106), Expect = 1e-05
Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Frame = +3
Query: 174 TDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITN-LKRQFPQLRVF 350
TD++ +L THL A ++A++Y++ N A + A T ++++ P ++
Sbjct: 21 TDIDSSLF--THLFCTFADLEAESYEITIATWN------QAPFHAFTETVQQRNPHVKTL 72
Query: 351 LDXWRGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQ 500
L G+ D + + + +P +R +F S + +A YGF G+DL W+
Sbjct: 73 LSIGGGNADKD---AFASMASNPDSRASFIQSTITVARSYGFHGLDLDWE 119
>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 379
Score = 40.7 bits (91), Expect = 8e-04
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Frame = +3
Query: 174 TDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITN-LKRQFPQLRVF 350
TD++ +L THL A + + T ++ + N + T ++R+ P ++
Sbjct: 42 TDIDSSLF--THLFCAFADLNSQTNQVTVSSAN------QPKFSTFTQTVQRRNPSVKTL 93
Query: 351 LDXWRGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQ 500
L G D Y + +P +R +F +S++ +A YGF G+DL W+
Sbjct: 94 LSIGGG---IADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWE 140
>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 366
Score = 37.1 bits (82), Expect = 0.010
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Frame = +3
Query: 195 SFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITN-LKRQFPQLRVFLDXWRGD 371
S THL A I TY+++ + N + T ++R+ P ++ L G
Sbjct: 45 SLFTHLFCAFADINTLTYQVIVSSRN------KPKFSTFTQTVRRRNPTVKTLLSI--GG 96
Query: 372 DDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQ 500
D T + + + +P +R F +S++ LA GF G+DL+W+
Sbjct: 97 DFTYN-FAFASMASNPTSRKLFISSSIKLARSCGFHGLDLNWK 138
>At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 261
Score = 34.7 bits (76), Expect = 0.053
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 405 LLESPQARTAFTNSALLLAEQYGFDGIDLSWQ 500
+ S R +F S + +A YGFDG+DL W+
Sbjct: 1 MASSSYGRKSFILSTISIARSYGFDGLDLDWE 32
>At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 332
Score = 34.3 bits (75), Expect = 0.070
Identities = 33/138 (23%), Positives = 65/138 (47%), Gaps = 2/138 (1%)
Frame = +3
Query: 93 SPSSQSKVLCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNEN 272
SPS++ K ++ E+Q + + P+ F THL A + A+++K+
Sbjct: 9 SPSAEVKASYWFPDG----ETQDPITSAETIPSALF-THLFCAFADLDANSHKVF----- 58
Query: 273 LDIDRAHAN-YRAITN-LKRQFPQLRVFLDXWRGDDDTEDPQKYNLLLESPQARTAFTNS 446
+ +AH + T +K + PQ++ L G + + + + + Q+R F +S
Sbjct: 59 --VSQAHEFIFSTFTETVKIRNPQVKTLLSI--GGKNANN-SAFASMASNHQSRKTFIDS 113
Query: 447 ALLLAEQYGFDGIDLSWQ 500
+ +A GF G+DL+W+
Sbjct: 114 WIFIARSNGFHGLDLAWE 131
>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 363
Score = 34.3 bits (75), Expect = 0.070
Identities = 25/99 (25%), Positives = 45/99 (45%)
Frame = +3
Query: 204 THLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKRQFPQLRVFLDXWRGDDDTE 383
THL A + T +V + ++ +N+ I +K++ P ++ L
Sbjct: 39 THLFCAFADLDPQTNSVVVSGAH---EQEFSNFTKI--VKKKNPHVQTLLSI---GGRNA 90
Query: 384 DPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQ 500
D + + +P +R +F SA+ A Y FDG+DL W+
Sbjct: 91 DKSAFASMASNPTSRKSFIWSAISSARYYRFDGLDLVWK 129
>At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 289
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = +3
Query: 405 LLESPQARTAFTNSALLLAEQYGFDGIDLSWQ 500
++ + +R +F +S++ +A GF G+DL+W+
Sbjct: 79 IVSNRTSRESFISSSISIARSLGFYGLDLAWE 110
>At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 401
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +1
Query: 91 HHLVAKAKSSATMTARAISEN-LKHVCCLRTWSLLFRSAPICCTNLPASKLT 243
H V K +AR + N + H C+ W + S P+C LPA LT
Sbjct: 200 HCAVCKENFVLKSSAREMPCNHIYHPDCILPWLAIRNSCPVCRHELPAEDLT 251
>At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1036
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 196 RSAPICCTNLPASKLTHIKWFHSM 267
RS PIC T P+S +H KW H +
Sbjct: 13 RSCPICATPFPSSSSSH-KWTHQV 35
>At5g50990.1 68418.m06322 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 511
Score = 28.7 bits (61), Expect = 3.5
Identities = 23/74 (31%), Positives = 32/74 (43%)
Frame = +1
Query: 193 FRSAPICCTNLPASKLTHIKWFHSMRIWTLIGRTLIIERSQT*KDSFLNCACS*TXGEVM 372
F S+ C L L H KW HS+ I + I I+ S D + C T EV
Sbjct: 145 FASSLAACARL--GDLHHAKWVHSLMIDSGIELNAIL--SSALVDVYAKCGDIGTSREVF 200
Query: 373 TTLKIHRSTIFYWN 414
++K R+ + WN
Sbjct: 201 YSVK--RNDVSIWN 212
>At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 525
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 171 PTDLEPALSFCTHLLYKSAG 230
PTD P+LSFC +Y S G
Sbjct: 321 PTDPNPSLSFCPSNIYSSTG 340
>At3g26920.1 68416.m03368 F-box family protein contains F-box domain
Pfam:PF00646
Length = 565
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 562 LMLCQKDPILERIFFGFLFGNCQ 494
L+L K P LE + GF FG C+
Sbjct: 336 LLLSNKAPFLESLHLGFRFGECR 358
>At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHX1a
[Arabidopsis thaliana] GI:3790591; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 423
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 160 HVCCLRTWSLLFRSAPICCTNLPASKLTH 246
HV C+ TW L + P+C +NL + +H
Sbjct: 150 HVECIDTWLLSHSTCPLCRSNLLSGFSSH 178
>At4g37110.1 68417.m05256 expressed protein
Length = 417
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 255 PFYMCQLGCRQICTADGCRTKEQAPSP*AAY-VLEIL*YSSCCH 127
P ++C + CR IC CRTK+ AAY + L Y S H
Sbjct: 228 PDWICPV-CRDICNCSFCRTKKGWLPTGAAYRKIHKLGYKSVAH 270
>At4g15075.1 68417.m02316 hypothetical protein
Length = 168
Score = 27.9 bits (59), Expect = 6.1
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +1
Query: 154 LKHVCCLRTWSLLFRSAP 207
L++ CCL+T ++LF+S P
Sbjct: 126 LRNACCLKTATILFKSTP 143
>At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 396
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 160 HVCCLRTWSLLFRSAPICCTNLPAS 234
HV C+ W L S P+C LP+S
Sbjct: 282 HVRCIVPWLELHSSCPVCRFELPSS 306
>At2g46160.1 68415.m05740 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 zinc finger protein
ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 214
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 160 HVCCLRTWSLLFRSAPIC 213
H+CCL W L S P+C
Sbjct: 162 HLCCLDAWLKLNGSCPVC 179
>At5g42870.1 68418.m05225 lipin family protein contains Pfam
profile: PF04571 lipin, N-terminal conserved region
Length = 930
Score = 23.0 bits (47), Expect(2) = 8.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 192 LSFCTHLLYKSAGIQADTYKMVSLNENLDIDR 287
LS C HLL S G+ A+ +E LD+++
Sbjct: 542 LSLCKHLL--SEGMGAEAASQAFNSEKLDMEK 571
Score = 22.6 bits (46), Expect(2) = 8.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 87 PASPSSQSKVLCYYDSKSYIRESQARMLPTDLE 185
P+ P SQS C+ SK +RE ++ D E
Sbjct: 486 PSQPLSQSFDPCFNTSKLDLREDESSSGGLDAE 518
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,031,719
Number of Sequences: 28952
Number of extensions: 220685
Number of successful extensions: 656
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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