Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J05
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    26   4.4  
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    25   7.7  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    25   7.7  

>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 24/88 (27%), Positives = 35/88 (39%)
 Frame = -1

Query: 378 FFIYNSNTTNDYY*PNILPLLFRXXXXXNI*EIRSHTIKL*TIPCFGRHEVIFVILNIKM 199
           +FIY     NDY  PN L  L        +   R+H I     P   +  VI        
Sbjct: 170 YFIYGPWHANDYIKPNHLLFLIVGWAFAVLSNFRTHIILRDLRPAGSKKRVI----PTGY 225

Query: 198 HYNLINR*MLLNTGVDWLFWIYYLITKN 115
            +NL++        + WLF  + L+TK+
Sbjct: 226 GFNLVSFPNYFFESLGWLF--FALLTKS 251


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -2

Query: 338 NLIYYLSYFVIIIMIIYEKFVVTQLNCEQFLVSADMRLFLSF 213
           N I ++  FVI    IY   +   L  +Q++++ D+R  +S+
Sbjct: 33  NFIQFIEEFVIDNDFIYRTQLRDNLVVKQYMLNIDLRHLISY 74


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 168 LNTGVDWLFWIYYLITKN 115
           L +GV WL W  Y I KN
Sbjct: 30  LMSGVQWLAWGIYKINKN 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,877,678
Number of Sequences: 5004
Number of extensions: 32034
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)