Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J05
         (564 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g63320.1 68416.m07123 protein phosphatase 2C-related / PP2C-r...    27   8.7  
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01...    27   8.7  

>At3g63320.1 68416.m07123 protein phosphatase 2C-related /
           PP2C-related protein phosphatase 2C - Rattus norvegicus,
           EMBL:AF095927
          Length = 423

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 425 GNNSRSIVYNVSHQFFFSFIIQTPQTIIINL 333
           G N+R IV++V   F F F   TP+ +++ +
Sbjct: 39  GGNTRRIVFSVPLIFAFPFPTGTPKDVLVGI 69


>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01612:
            reticulocyte binding protein; contains TIGRFAM TIGR00864:
            polycystin cation channel protein; similar to
            fimbriae-associated protein Fap1 [Streptococcus
            parasanguinis] (GI:3929312)
          Length = 1498

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 202  FYIKNDKNNLMSAETRNCSQ 261
            FYI+ D N   ++++RNCS+
Sbjct: 1313 FYIRRDSNRKPNSDSRNCSR 1332


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,002,910
Number of Sequences: 28952
Number of extensions: 143561
Number of successful extensions: 193
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)