Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J04
         (536 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g21120.1 68418.m02518 ethylene-insensitive3-like2 (EIL2) iden...    28   4.5  
At3g63260.2 68416.m07109 protein kinase, putative (MRK1) identic...    28   4.5  
At3g63260.1 68416.m07108 protein kinase, putative (MRK1) identic...    28   4.5  
At5g38690.1 68418.m04678 expressed protein                             27   6.0  
At2g32235.1 68415.m03939 expressed protein                             27   6.0  
At2g12875.1 68415.m01402 hypothetical protein                          27   6.0  
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea...    27   7.9  
At3g27900.1 68416.m03481 hypothetical protein                          27   7.9  

>At5g21120.1 68418.m02518 ethylene-insensitive3-like2 (EIL2)
           identical to ethylene-insensitive3-like2 (EIL2)
           GI:2224929 from [Arabidopsis thaliana]
          Length = 518

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +1

Query: 313 KNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTNKTEKYGTNTDSLIGIVXTN 492
           KNG+ T++L            +    + A+DGI  + +KT   E+Y      + GIV  N
Sbjct: 69  KNGLGTRLLLKQQHDDFPEHSSKRTMYKAQDGILKYMSKT--MERYKAQ-GFVYGIVLEN 125

Query: 493 GSDV 504
           G  V
Sbjct: 126 GKTV 129


>At3g63260.2 68416.m07109 protein kinase, putative (MRK1) identical
           to ATMRK1 [Arabidopsis thaliana] gi|2351097|dbj|BAA22079
          Length = 344

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +1

Query: 292 YKGLYSLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVF 420
           Y+G+Y+ +  VA K+L+ G D  AT  +TT +  S +  + V+
Sbjct: 98  YRGVYAGQE-VAVKVLDWGEDGYATPAETTALRASFEQEVAVW 139


>At3g63260.1 68416.m07108 protein kinase, putative (MRK1) identical
           to ATMRK1 [Arabidopsis thaliana] gi|2351097|dbj|BAA22079
          Length = 391

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +1

Query: 292 YKGLYSLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVF 420
           Y+G+Y+ +  VA K+L+ G D  AT  +TT +  S +  + V+
Sbjct: 98  YRGVYAGQE-VAVKVLDWGEDGYATPAETTALRASFEQEVAVW 139


>At5g38690.1 68418.m04678 expressed protein
          Length = 572

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = +1

Query: 259 EADVNDKGEKEYKGLYSLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTNK 438
           E  +  K + E       KNG+   I E     S  N +T EVY   ++ I +   K+  
Sbjct: 431 EKQLKQKLQDELAQAVKAKNGIPLLITEHDAIVSRINAETQEVYSEMQNAIDMLSKKSQG 490

Query: 439 TE 444
           ++
Sbjct: 491 SD 492


>At2g32235.1 68415.m03939 expressed protein
          Length = 310

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +1

Query: 307 SLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTNKTEKYGTNTDS 468
           SL     +  +  G  A+  + D  ++ +  KDG+   D   NK  KYG    S
Sbjct: 193 SLLGSSRSNAIPEGDLANPESSDANKMLYIIKDGVRELDQWCNKLLKYGEAVSS 246


>At2g12875.1 68415.m01402 hypothetical protein
          Length = 325

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 313 KNGVATKILETGTDASATNDDTTE 384
           K GVATK+++ GT A+     +TE
Sbjct: 79  KRGVATKLIDKGTKATTEEPSSTE 102


>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400); U3
           snoRNP-associated 55-kDa protein, Homo sapiens,
           gb:NP_004695;  Vegetatible incompatibility protein
           HET-E-1 (SP:Q00808) [Podospora anserina]
          Length = 504

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 361 ATNDDTTEVYFSAKDG-IYVFDAKTNKTEKYGTNTDSLI 474
           A +DD +  + ++KDG I  +D  + KT+KY   +D ++
Sbjct: 168 ALSDDDSRGFSASKDGTIMHWDVSSGKTDKYIWPSDEIL 206


>At3g27900.1 68416.m03481 hypothetical protein
          Length = 244

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 382 EVYFSAKDGIYVFDAKTNKTEKYGTNTDSLI 474
           E Y   K+G+Y+ D K+N+ E +  +  S +
Sbjct: 103 ETYIKPKNGVYLADVKSNQWEVFVKSCKSFV 133


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.313    0.133    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,871,297
Number of Sequences: 28952
Number of extensions: 172352
Number of successful extensions: 353
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)