Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J03
         (517 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27427| Best HMM Match : CXCXC (HMM E-Value=7.5)                     29   3.0  
SB_7617| Best HMM Match : Sod_Fe_N (HMM E-Value=2)                     29   3.0  
SB_58611| Best HMM Match : Collagen (HMM E-Value=0.4)                  27   6.9  
SB_45980| Best HMM Match : C1_3 (HMM E-Value=4.6)                      27   6.9  

>SB_27427| Best HMM Match : CXCXC (HMM E-Value=7.5)
          Length = 55

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 121 FDSLCISVYLTIYCEISILNKLC 53
           FD LC+ V   +YC  ++LNK+C
Sbjct: 14  FD-LCVDVLAELYCTRTVLNKVC 35


>SB_7617| Best HMM Match : Sod_Fe_N (HMM E-Value=2)
          Length = 211

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 121 FDSLCISVYLTIYCEISILNKLC 53
           FD LC+ V   +YC  ++LNK+C
Sbjct: 82  FD-LCVDVLAELYCTRTVLNKVC 103



 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 121 FDSLCISVYLTIYCEISILNKLC 53
           FD LC+ V   +YC  ++LNK+C
Sbjct: 131 FD-LCVDVLAELYCTRTVLNKVC 152


>SB_58611| Best HMM Match : Collagen (HMM E-Value=0.4)
          Length = 773

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 184 VRKVEVETDQKILLLYHEYFYRNRPTCRIV*KLSYSFTKMSNVRA 318
           + ++E +TD+K L+ + E +    PT   V K+  S   M  ++A
Sbjct: 122 IARIEFDTDKKALVKWQELYPGTEPTGLFVAKVDVSEIPMDELQA 166


>SB_45980| Best HMM Match : C1_3 (HMM E-Value=4.6)
          Length = 771

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 184 VRKVEVETDQKILLLYHEYFYRNRPTCRIV*KLSYSFTKMSNVRA 318
           + ++E +TD+K L+ + E +    PT   V K+  S   M  ++A
Sbjct: 522 IARIEFDTDKKALVKWQELYPGTEPTGLFVAKVDVSEIPMDELQA 566


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,359,736
Number of Sequences: 59808
Number of extensions: 202854
Number of successful extensions: 371
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)