Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J03
         (517 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56620.1 68414.m06512 pectinesterase inhibitor domain-contain...    28   3.2  
At3g06910.1 68416.m00820 Ulp1 protease family protein similar to...    27   5.7  

>At1g56620.1 68414.m06512 pectinesterase inhibitor domain-containing
           protein
          Length = 179

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 124 LFDSLCISVYLTIYCEISILNKL 56
           L DS+C++     YCE SI++KL
Sbjct: 37  LIDSICVNTKNMYYCEQSIISKL 59


>At3g06910.1 68416.m00820 Ulp1 protease family protein similar to
           sentrin/SUMO-specific protease [Homo sapiens]
           GI:6906859; contains Pfam profile PF02902: Ulp1 protease
           family, C-terminal catalytic domain
          Length = 502

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -2

Query: 489 NLCCVSEKDQRGKEPF*KHTDQSRAVVHCAFIHFFFITLVYNSAGSYNF 343
           NL  V  K++  +EP        +  + C F + FF T + NSA  YN+
Sbjct: 322 NLYMVLLKEREAREP--------KKFLKCHFFNTFFFTKLVNSATGYNY 362


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,527,010
Number of Sequences: 28952
Number of extensions: 135450
Number of successful extensions: 221
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)