Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J01
         (466 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    42   6e-05
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    36   0.004
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    31   0.065
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    31   0.065
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    31   0.065
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    30   0.20 
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    28   0.81 
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    27   1.4  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    27   1.9  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    26   3.3  

>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 41.5 bits (93), Expect = 6e-05
 Identities = 26/105 (24%), Positives = 45/105 (42%)
 Frame = +3

Query: 87  GRDPSRSINADEAATMGAVYRAAALATGYKVAALNVRDAVILPIQVVFTRHVDGNDQLVK 266
           G+  S ++N DEA   G     A L+  ++V   +V D    PI   +    +  ++   
Sbjct: 361 GKGLSFTLNQDEAVARGCALSCAILSPVFRVREFHVHDVTTYPITFSWEPIPENPEEDSS 420

Query: 267 RTLFGPMNPYPQKKVITFNKHTDDFDFYVNYAELDHIPSTELQYI 401
             +F   NP P  K++TF +    F     Y++   +P +  Q I
Sbjct: 421 LEVFSEGNPIPSTKILTFYRKA-PFKLLAAYSKEAQLPGSIKQNI 464


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 35.5 bits (78), Expect = 0.004
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +3

Query: 99  SRSINADEAATMGAVYRAAALATGYKVAALNVRDAVILP 215
           S+++NADEA+  GA +  A+L   ++V  L V+D +  P
Sbjct: 394 SKNVNADEASVKGAAFYGASLTKSFRVKPLIVQDIINYP 432


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 31.5 bits (68), Expect = 0.065
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
 Frame = +3

Query: 87  GRDPSRSINADEAATMGAVYRAAALA--TGYKVAALNVRDAVILPIQVVFTRHVDGNDQL 260
           G++P +SIN DEA   GA  +AA L   T  K   L + D   L + +     V     L
Sbjct: 354 GKEPCKSINPDEAVAYGAAVQAAILVGDTSEKTQDLLLLDVAPLSLGIETAGGV--MTPL 411

Query: 261 VKRTLFGPMNPYPQKKVITFNKHTDD 338
           +KR         P KK   F+ + D+
Sbjct: 412 IKRN-----TTIPTKKSEVFSTYADN 432


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 31.5 bits (68), Expect = 0.065
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +3

Query: 90  RDPSRSINADEAATMGAVYRAAALATGYKVAALNVRDAVILPIQV---VFTRHVDGNDQL 260
           R+P++S+N DEA  +GA  +   L+   K   L     + L I+    VFTR ++ N  +
Sbjct: 402 REPAKSVNPDEAVAIGAAIQGGVLSGHVKDLVLLDVTPLSLGIETLGGVFTRLINRNTTI 461

Query: 261 VKR 269
             R
Sbjct: 462 PTR 464


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 31.5 bits (68), Expect = 0.065
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
 Frame = +3

Query: 87  GRDPSRSINADEAATMGAVYRAAALA--TGYKVAALNVRDAVILPIQVVFTRHVDGNDQL 260
           G++P +SIN DEA   GA  +AA L   T  K   L + D  + P+ +           L
Sbjct: 354 GKEPCKSINPDEAVAYGAAVQAAVLTGDTSEKTQDLLLLD--VAPLSMGIETAGGVMTPL 411

Query: 261 VKRTLFGPMNPYPQKKVITFNKHTDD 338
           +KR         P KK   F+ ++D+
Sbjct: 412 IKRN-----TTIPTKKSEIFSTYSDN 432


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 29.9 bits (64), Expect = 0.20
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +3

Query: 87  GRDPSRSINADEAATMGAVYRAAAL---ATGYKVAALNVRDAVILPIQVVFTRHVDG 248
           GR  ++SIN DEA   GA  +AA L   A   K   L + D V L + V    +V G
Sbjct: 358 GRALNKSINPDEAVAYGAAVQAAVLTNKADSDKTQDLLLLDVVPLSLGVAMEGNVFG 414


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 27.9 bits (59), Expect = 0.81
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 338 IVSVLIKSYYFLLW-VWIHWSEKCPLHQLI 252
           I+S L+ S Y  LW V+I W  + P H+ I
Sbjct: 292 ILSALLSSAYTFLWDVFIDWRIRFPFHKSI 321


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = +3

Query: 150 AAALATGYKVAALNVRDAVILP 215
           AAA+  G KVAA NV+DA+I+P
Sbjct: 370 AAAVVKGRKVAA-NVKDAMIVP 390


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 454 PNAVATPTNETLVRFKVP 401
           PN + TP NET+ R K P
Sbjct: 126 PNIIPTPANETVPRIKQP 143


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 83  GGAQRADDGRSPSRAPRQHEPSAR 12
           GG    D GR  SR+P  HE  +R
Sbjct: 103 GGRVHGDSGRLRSRSPSPHEARSR 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,728,465
Number of Sequences: 5004
Number of extensions: 35138
Number of successful extensions: 91
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)