Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J01
         (466 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)              74   5e-14
SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.27 
SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0)                  31   0.47 
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)                       31   0.47 
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)                 31   0.62 
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.62 
SB_47390| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_58588| Best HMM Match : COBRA1 (HMM E-Value=0.00012)                28   4.4  
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)                        28   4.4  
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_49787| Best HMM Match : DUF1103 (HMM E-Value=4.4)                   27   5.8  
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)                       27   5.8  
SB_51013| Best HMM Match : GFO_IDH_MocA (HMM E-Value=4.7e-31)          27   7.7  
SB_47281| Best HMM Match : Adaptin_N (HMM E-Value=0)                   27   7.7  

>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1019

 Score = 74.1 bits (174), Expect = 5e-14
 Identities = 36/67 (53%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
 Frame = +3

Query: 264 KRTLFGPMNPYPQKKVITFNKHTDDFDFYVNYAELDHIPS-TELQYIGTLNLTKVSLVGV 440
           +RTL+  MN  PQKKV+TFNKHTDDF F+V+Y  L+ + +  +L   G LN++ VS+ GV
Sbjct: 413 ERTLYYNMNTVPQKKVMTFNKHTDDFQFHVSYNGLEDLMNPADLAMFGELNVSTVSVKGV 472

Query: 441 ATALGKH 461
           A AL KH
Sbjct: 473 ADALNKH 479


>SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1186

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = -3

Query: 131 GGGLV----GVDGPRRIAPGGGAQRADDGRSPSRAPRQHEPSARPG 6
           GGG +    GV  PR+  P  G    + GR    AP Q  P+  PG
Sbjct: 371 GGGFIPTRRGVPNPRQGGPNPGLNNREPGRGNLGAPYQERPNPGPG 416


>SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0)
          Length = 949

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +3

Query: 240 VDGNDQLVKRTLFGPMNPYPQKKVITFNKHTDDFDFYVNYAELDHIPSTELQYI 401
           ++   ++ +RTL GP    P KKV+    + D    Y+ Y  +D   +  + YI
Sbjct: 802 INSTTKMCRRTLLGPTYGTPLKKVVVLPAYDDRETRYMTYITMDKDVTRYMIYI 855


>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
          Length = 1327

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 87   GRDPSRSINADEAATMGAVYRAAAL 161
            G++PSR IN DEA   GA  +A  L
Sbjct: 1053 GKEPSRGINPDEAVAYGAAVQAGVL 1077


>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
          Length = 212

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +3

Query: 87  GRDPSRSINADEAATMGAVYRAAALATGYKVAALNVRDAVILPIQV---VFTRHVDGN 251
           GR PS+++N DEA  +GA  +   LA   K   L     + L I+    VFT+ +  N
Sbjct: 111 GRVPSKAVNPDEAVAIGAAIQGGVLAGDVKDVLLLDVTPLSLGIETLGGVFTKLITRN 168


>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 766

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +3

Query: 87  GRDPSRSINADEAATMGAVYRAAALATGYKVAALNVRDAVILPIQV---VFTRHVDGN 251
           GR PS+++N DEA  +GA  +   LA   K   L     + L I+    VFT+ +  N
Sbjct: 166 GRVPSKAVNPDEAVAIGAAIQGGVLAGDVKDVLLLDVTPLSLGIETLGGVFTKLITRN 223


>SB_47390| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 28/112 (25%), Positives = 45/112 (40%)
 Frame = +3

Query: 87  GRDPSRSINADEAATMGAVYRAAALATGYKVAALNVRDAVILPIQVVFTRHVDGNDQLVK 266
           G++  R I+ DE    GA  +A+ L  G K A +      +     V      G +    
Sbjct: 65  GKEICRRISPDEVVAYGAAVQASILM-GRKEADMITEIETMSKAICVSV----GGESSRM 119

Query: 267 RTLFGPMNPYPQKKVITFNKHTDDFDFYVNYAELDHIPSTELQYIGTLNLTK 422
             +     PYP ++  TF   TDD    +   +L   P  EL++  T ++ K
Sbjct: 120 IPVIPQYCPYPLRRAHTFTTATDD---QIVLRDLPAQPKGELKFTATFHVKK 168


>SB_58588| Best HMM Match : COBRA1 (HMM E-Value=0.00012)
          Length = 421

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 466 PVCLPNAVATPTNETLVRFKVP 401
           PV  PN VAT TN+T+    +P
Sbjct: 320 PVVQPNQVATSTNDTITTHDIP 341


>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
          Length = 640

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 21/85 (24%), Positives = 38/85 (44%)
 Frame = +3

Query: 84  TGRDPSRSINADEAATMGAVYRAAALATGYKVAALNVRDAVILPIQVVFTRHVDGNDQLV 263
           +G+  ++SIN DEA   GA  +AA L+        +V    + P+ +      +   +L+
Sbjct: 356 SGKSLNKSINPDEAVAYGAAVQAAILSGDKSDEVKDVLLVDVAPLSLGIETAGEVMTKLI 415

Query: 264 KRTLFGPMNPYPQKKVITFNKHTDD 338
           +R         P K   TF  ++D+
Sbjct: 416 ERNA-----RIPTKATQTFTTYSDN 435


>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 746

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 87  GRDPSRSINADEAATMGAVYRAAAL 161
           G++ ++SIN DEA   GA  +AA L
Sbjct: 450 GKELNKSINPDEAVAYGAAVQAAIL 474


>SB_49787| Best HMM Match : DUF1103 (HMM E-Value=4.4)
          Length = 450

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 146 VNSAHGGGLVGVDGPRRIAPGG 81
           +N+AHG      DGPRR  P G
Sbjct: 220 LNAAHGARPSSADGPRRAVPKG 241


>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
          Length = 1097

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 87  GRDPSRSINADEAATMGAVYRAAAL 161
           G++ ++SIN DEA   GA  +AA L
Sbjct: 358 GKELNKSINPDEAVAYGAAVQAAIL 382


>SB_51013| Best HMM Match : GFO_IDH_MocA (HMM E-Value=4.7e-31)
          Length = 336

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 348 YVNYAELDHIPSTELQYIGTLNLTKVSLVGVATALGKH 461
           Y +Y EL      E+ YI T+N T   L  +A   GKH
Sbjct: 57  YGSYKELVEDSDVEVVYISTVNSTHKELCILALNHGKH 94


>SB_47281| Best HMM Match : Adaptin_N (HMM E-Value=0)
          Length = 949

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +2

Query: 404 HFKSDQSLIGRCCDSVGQ--THR 466
           H  SDQSL+ R C+ +GQ  THR
Sbjct: 332 HMDSDQSLLIRGCNQLGQFLTHR 354


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,434,358
Number of Sequences: 59808
Number of extensions: 273038
Number of successful extensions: 928
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)