Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I24
         (373 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    25   3.8  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    25   3.8  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    24   8.8  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    24   8.8  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    24   8.8  
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        24   8.8  

>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 13/47 (27%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
 Frame = -1

Query: 163 TSSVAAAITP--STNTRSNVNAIKTQAFAQTLGILRLAGCVETCSAA 29
           TSSVAA++TP  S++  ++V  + + + A ++  +  +  V++ ++A
Sbjct: 74  TSSVAASVTPAASSSVAASVTPVASSSVAASVTPVSSSAVVDSATSA 120


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 215 DAEKLVPRRPPPTLDAEDKI 274
           D  KL   RPPPTL  + K+
Sbjct: 120 DISKLCAHRPPPTLGMKRKV 139


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 14/63 (22%), Positives = 26/63 (41%)
 Frame = +2

Query: 104 GVHITASIGAWCYRGGYRRCLHNMVVVIEGGLPCVLPDAEKLVPRRPPPTLDAEDKIKSK 283
           G++           GG R   ++++ ++  G  C L   + L P  P   L A+  + S 
Sbjct: 428 GLYAAGEAACVSVHGGNRLGANSLLDIVVFGRACALHIKDTLEPNTPHKPLAADAGLDSL 487

Query: 284 AFV 292
            F+
Sbjct: 488 KFL 490


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 203 CVLPDAEKLVPRRPPPTLDAEDKIK 277
           C L +AE +V +RP P L++   +K
Sbjct: 259 CTLAEAEFMVAKRPFPDLESALVVK 283


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 179 RPCYGDIVGSRRDNTKHQYSQ*CE 108
           R  +GD V +   + KH+Y+  CE
Sbjct: 277 RKSFGDFVENEVKSYKHEYANICE 300


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 179 RPCYGDIVGSRRDNTKHQY 123
           RP Y    GS+ +NT HQY
Sbjct: 21  RPNYSPNNGSQSNNTVHQY 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,513,416
Number of Sequences: 5004
Number of extensions: 26737
Number of successful extensions: 77
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)