Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I24
         (373 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)             27   3.7  
SB_35358| Best HMM Match : 7tm_1 (HMM E-Value=0.016)                   27   3.7  
SB_8728| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.44)            27   4.9  
SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  

>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
          Length = 812

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 27  RAALHVSTQPANRNIPSVCANAC 95
           R ++HVS  P N   PS+C + C
Sbjct: 734 RPSVHVSDLPYNSACPSICKDVC 756


>SB_35358| Best HMM Match : 7tm_1 (HMM E-Value=0.016)
          Length = 133

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +1

Query: 55  PLIVIFRVFVQMLVFLWRSH 114
           PL++IF  +V+M++ L RSH
Sbjct: 81  PLLIIFPAYVKMIITLKRSH 100


>SB_8728| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.44)
          Length = 273

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 33  ALHVSTQPANRNIPSVCANACVFMAFTLLRVLVLGVIAAATDDVSIT 173
           +LHV   P+ R + S        +A T++    +GV+AA    V+ T
Sbjct: 62  SLHVRPAPSEREVESTDNLGVAVVAATVIVAATVGVVAATVGVVAAT 108


>SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2529

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +2

Query: 290 VWRRDNEEIKRVPWNGTLDG--VTRGRTV 370
           +WR  N  IKR  W G+  G   +RGR +
Sbjct: 304 IWRLRNPTIKRYTWRGSAQGKRSSRGRYI 332


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,330,349
Number of Sequences: 59808
Number of extensions: 244991
Number of successful extensions: 717
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)