Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_I24
(373 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body prot... 28 2.4
U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body prot... 28 2.4
U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body prot... 28 2.4
J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein ( C.ele... 28 2.4
AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain (... 28 2.4
AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical ... 28 2.4
AY714779-1|AAU14146.1| 1338|Caenorhabditis elegans UNC-89 protein. 27 3.2
AF003131-8|AAP68959.1| 1393|Caenorhabditis elegans Uncoordinated... 27 3.2
AF003131-7|AAV34798.1| 1396|Caenorhabditis elegans Uncoordinated... 27 3.2
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 27 3.2
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 27 3.2
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 27 3.2
U80840-2|AAK68305.1| 336|Caenorhabditis elegans Hypothetical pr... 27 4.3
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 27 5.7
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 27 5.7
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 27 5.7
Z81077-4|CAB03071.3| 618|Caenorhabditis elegans Hypothetical pr... 26 9.9
Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical pr... 26 9.9
>U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body protein
1, isoform b protein.
Length = 369
Score = 27.9 bits (59), Expect = 2.4
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 164 LHNMVVVIEG--GLPCVLPDAEKLVPRRPPPTLDAEDKIKSKAFVWRR 301
+HN +++ E P P E P RPPP + +++ +++AF W R
Sbjct: 134 IHNKMIIREDIPAPPRPPPPVELSPPPRPPPPPEYDEEEETRAF-WER 180
>U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body protein
1, isoform a protein.
Length = 1010
Score = 27.9 bits (59), Expect = 2.4
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 164 LHNMVVVIEG--GLPCVLPDAEKLVPRRPPPTLDAEDKIKSKAFVWRR 301
+HN +++ E P P E P RPPP + +++ +++AF W R
Sbjct: 775 IHNKMIIREDIPAPPRPPPPVELSPPPRPPPPPEYDEEEETRAF-WER 821
>U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body protein
1, isoform c protein.
Length = 999
Score = 27.9 bits (59), Expect = 2.4
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 164 LHNMVVVIEG--GLPCVLPDAEKLVPRRPPPTLDAEDKIKSKAFVWRR 301
+HN +++ E P P E P RPPP + +++ +++AF W R
Sbjct: 775 IHNKMIIREDIPAPPRPPPPVELSPPPRPPPPPEYDEEEETRAF-WER 821
>J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein (
C.elegans vinculin (deb-1) gene, complete cds. ).
Length = 1010
Score = 27.9 bits (59), Expect = 2.4
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 164 LHNMVVVIEG--GLPCVLPDAEKLVPRRPPPTLDAEDKIKSKAFVWRR 301
+HN +++ E P P E P RPPP + +++ +++AF W R
Sbjct: 775 IHNKMIIREDIPAPPRPPPPVELSPPPRPPPPPEYDEEEETRAF-WER 821
>AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 5
protein.
Length = 1434
Score = 27.9 bits (59), Expect = 2.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 170 YGDIVGSRRDNTKHQYSQ*CERH 102
+G G+R KH+Y Q C+RH
Sbjct: 744 HGHYAGTRISEAKHKYIQICQRH 766
>AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical
protein Y38C1AB.4 protein.
Length = 1393
Score = 27.9 bits (59), Expect = 2.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 170 YGDIVGSRRDNTKHQYSQ*CERH 102
+G G+R KH+Y Q C+RH
Sbjct: 703 HGHYAGTRISEAKHKYIQICQRH 725
>AY714779-1|AAU14146.1| 1338|Caenorhabditis elegans UNC-89 protein.
Length = 1338
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 170 NMVVVIEGGLPCVLPDAEKLVPRRPPPTLD 259
N V EG P + D ++ P++PPPT++
Sbjct: 280 NAPVAPEGRRPAEIYDYLRIQPKKPPPTVE 309
>AF003131-8|AAP68959.1| 1393|Caenorhabditis elegans Uncoordinated
protein 89, isoform c protein.
Length = 1393
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 170 NMVVVIEGGLPCVLPDAEKLVPRRPPPTLD 259
N V EG P + D ++ P++PPPT++
Sbjct: 244 NAPVAPEGRRPAEIYDYLRIQPKKPPPTVE 273
>AF003131-7|AAV34798.1| 1396|Caenorhabditis elegans Uncoordinated
protein 89, isoform d protein.
Length = 1396
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 170 NMVVVIEGGLPCVLPDAEKLVPRRPPPTLD 259
N V EG P + D ++ P++PPPT++
Sbjct: 247 NAPVAPEGRRPAEIYDYLRIQPKKPPPTVE 276
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 170 NMVVVIEGGLPCVLPDAEKLVPRRPPPTLD 259
N V EG P + D ++ P++PPPT++
Sbjct: 6868 NAPVAPEGRRPAEIYDYLRIQPKKPPPTVE 6897
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 218 AEKLVPRRPPPTLDAEDKIKSKAFVWRRDNEEIK 319
A++ VP+ P L+ E + K K W ++ +EIK
Sbjct: 4219 ADQSVPKGTPLVLEVEIEGKPKDVKWYKNGDEIK 4252
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 170 NMVVVIEGGLPCVLPDAEKLVPRRPPPTLD 259
N V EG P + D ++ P++PPPT++
Sbjct: 6292 NAPVAPEGRRPAEIYDYLRIQPKKPPPTVE 6321
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 218 AEKLVPRRPPPTLDAEDKIKSKAFVWRRDNEEIK 319
A++ VP+ P L+ E + K K W ++ +EIK
Sbjct: 3579 ADQSVPKGTPLVLEVEIEGKPKDVKWYKNGDEIK 3612
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 170 NMVVVIEGGLPCVLPDAEKLVPRRPPPTLD 259
N V EG P + D ++ P++PPPT++
Sbjct: 6932 NAPVAPEGRRPAEIYDYLRIQPKKPPPTVE 6961
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 218 AEKLVPRRPPPTLDAEDKIKSKAFVWRRDNEEIK 319
A++ VP+ P L+ E + K K W ++ +EIK
Sbjct: 4219 ADQSVPKGTPLVLEVEIEGKPKDVKWYKNGDEIK 4252
>U80840-2|AAK68305.1| 336|Caenorhabditis elegans Hypothetical
protein F08D12.7 protein.
Length = 336
Score = 27.1 bits (57), Expect = 4.3
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -3
Query: 176 PCYGD--IVGSRRDNTKHQYSQ*CERHKNTSICTNT 75
PC GD I GS+++ T CERH CT T
Sbjct: 281 PCIGDHNIAGSKKEET-------CERHTKLKECTRT 309
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 218 AEKLVPRRPPPTLDAEDKIKSKAFVWRRDNEEIK 319
A++ VP+ P L+ E + K K W ++ +EIK
Sbjct: 4219 ADQSVPKGTPLVLEVEIEGKPKDVKWYKNGDEIK 4252
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 218 AEKLVPRRPPPTLDAEDKIKSKAFVWRRDNEEIK 319
A++ VP+ P L+ E + K K W ++ +EIK
Sbjct: 3579 ADQSVPKGTPLVLEVEIEGKPKDVKWYKNGDEIK 3612
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 218 AEKLVPRRPPPTLDAEDKIKSKAFVWRRDNEEIK 319
A++ VP+ P L+ E + K K W ++ +EIK
Sbjct: 4219 ADQSVPKGTPLVLEVEIEGKPKDVKWYKNGDEIK 4252
>Z81077-4|CAB03071.3| 618|Caenorhabditis elegans Hypothetical
protein F36A2.4 protein.
Length = 618
Score = 25.8 bits (54), Expect = 9.9
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +1
Query: 55 PLIVIFRVFVQMLVFLWRSHYCEYWCLVLS 144
PL V F VFV + W Y E W V S
Sbjct: 229 PLTVFFFVFVYGCIAAWVVRYWETWTYVES 258
>Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical
protein T23G5.3 protein.
Length = 262
Score = 25.8 bits (54), Expect = 9.9
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +2
Query: 197 LPCVLPDAEKL-VPRRPPPTLDAEDKIKSKA--FVWRRDNEEIKRVPWNG 337
LP ++ + + +P R PPT KIK+ A R+ I V WNG
Sbjct: 149 LPSLMQPKDTVQIPMRKPPTGRNSKKIKTSADSISLPRNFTHIAHVGWNG 198
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,742,677
Number of Sequences: 27780
Number of extensions: 163824
Number of successful extensions: 532
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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