Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I20
         (491 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0826 + 11569961-11570301,11572220-11572454                       61   4e-10
02_05_1047 + 33745656-33745964                                         56   1e-08
02_05_0089 - 25715637-25716333,25716481-25717238                       52   3e-07
10_08_0543 - 18649894-18650233,18651446-18651981                       49   2e-06
10_08_0544 - 18655186-18655567,18656835-18657151                       48   4e-06
01_07_0058 + 40799547-40799810,40799942-40799978,40800279-408003...    32   0.22 
12_02_0021 + 12393828-12395207                                         30   0.88 

>03_02_0826 + 11569961-11570301,11572220-11572454
          Length = 191

 Score = 61.3 bits (142), Expect = 4e-10
 Identities = 32/99 (32%), Positives = 50/99 (50%)
 Frame = +2

Query: 194 DLTVSELRKYDGTQSDGRVLLAVNGIIFDVTKGRRXXXXXXXXXXXXXRDSTRGLATGQV 373
           ++T+ +L  YDG      +L+A+ G ++DVT+GR              RD+TR LA    
Sbjct: 81  EITLEQLAAYDGKDPAKPILIAIRGQVYDVTRGRLFYGPQGPYSLFAGRDATRALALMSF 140

Query: 374 AAADNEEYDPCNDLTPDEIASAKEWEEQFREEYDIVGRL 490
              D       + L PDE+   ++WE++F+E Y  VG L
Sbjct: 141 DPIDLT--GDLDGLGPDELEVLQDWEDKFKERYPTVGHL 177


>02_05_1047 + 33745656-33745964
          Length = 102

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 28/99 (28%), Positives = 52/99 (52%)
 Frame = +2

Query: 194 DLTVSELRKYDGTQSDGRVLLAVNGIIFDVTKGRRXXXXXXXXXXXXXRDSTRGLATGQV 373
           +LT ++LR YDG+     + ++V G ++DVT GR              R+++R L  G++
Sbjct: 4   ELTAAQLRAYDGSDPSKPIYVSVRGKVYDVTSGRGFYGPGGAYAVFAGREASRAL--GKM 61

Query: 374 AAADNEEYDPCNDLTPDEIASAKEWEEQFREEYDIVGRL 490
           +  D +     + L+  E+    +WE +F+ +Y +V RL
Sbjct: 62  SKDDADVSGDLSGLSDKELGVLADWETKFQAKYPVVARL 100


>02_05_0089 - 25715637-25716333,25716481-25717238
          Length = 484

 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 30/99 (30%), Positives = 52/99 (52%)
 Frame = +2

Query: 194 DLTVSELRKYDGTQSDGRVLLAVNGIIFDVTKGRRXXXXXXXXXXXXXRDSTRGLATGQV 373
           ++T  ELR YDG+  +  +L+A+ G I+DVT+ R              RD++R LA  ++
Sbjct: 220 EVTEEELRVYDGSDPNKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGRDASRALA--KM 277

Query: 374 AAADNEEYDPCNDLTPDEIASAKEWEEQFREEYDIVGRL 490
           +   ++     + L P E+ +  EWE +F  +Y  VG +
Sbjct: 278 SFELDDLTGDVSGLGPIELEALHEWEGKFMSKYVKVGTI 316


>10_08_0543 - 18649894-18650233,18651446-18651981
          Length = 291

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 26/99 (26%), Positives = 54/99 (54%)
 Frame = +2

Query: 194 DLTVSELRKYDGTQSDGRVLLAVNGIIFDVTKGRRXXXXXXXXXXXXXRDSTRGLATGQV 373
           ++T  EL +YDG+  +  +L+A+ G I+DV++ R              +D++R LA  ++
Sbjct: 146 EITAEELLQYDGSDPEKPLLMAIKGQIYDVSQSRLFYGPGGPYALFAGKDASRALA--KM 203

Query: 374 AAADNEEYDPCNDLTPDEIASAKEWEEQFREEYDIVGRL 490
           +    +  D  + L+  E+++ ++WE +F  +Y  VG +
Sbjct: 204 SFEPQDLTDDISGLSLLELSALQDWEYKFSSKYVKVGTI 242


>10_08_0544 - 18655186-18655567,18656835-18657151
          Length = 232

 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 27/97 (27%), Positives = 51/97 (52%)
 Frame = +2

Query: 194 DLTVSELRKYDGTQSDGRVLLAVNGIIFDVTKGRRXXXXXXXXXXXXXRDSTRGLATGQV 373
           +++  ELR+YDG+     +L+A+ G I+DVT+ R              +D++R LA  ++
Sbjct: 73  EVSEEELRQYDGSDPKKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGKDASRALA--KM 130

Query: 374 AAADNEEYDPCNDLTPDEIASAKEWEEQFREEYDIVG 484
           +    +     + L P E+ + ++WE +F  +Y  VG
Sbjct: 131 SFEPQDLTGDISGLGPFELDALQDWEYKFMGKYVKVG 167


>01_07_0058 +
           40799547-40799810,40799942-40799978,40800279-40800362,
           40800563-40800615
          Length = 145

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = -3

Query: 468 SSLNC--SSHSFAEAISSGVKSLHGSYSSLSAAATCPVAKPRVESLPAKAAYXXXXX*NR 295
           +SL C  ++ S++  +SS   S      S   A+  P + PR  S+ A AAY        
Sbjct: 2   ASLLCPAAAASYSSLLSSSFPSRRRPQPSAPLASPAPSSPPRPRSVAAAAAYGYGGDVLM 61

Query: 294 RPFVTSKIIPFTASKTLPSL 235
           RPF T  ++   A  +  SL
Sbjct: 62  RPFDTQTLLISAAVVSAVSL 81


>12_02_0021 + 12393828-12395207
          Length = 459

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 25/81 (30%), Positives = 33/81 (40%)
 Frame = -3

Query: 453 SSHSFAEAISSGVKSLHGSYSSLSAAATCPVAKPRVESLPAKAAYXXXXX*NRRPFVTSK 274
           + H +A A +S + S H S S  S  ++  V  P    LPA A         RRP V   
Sbjct: 17  ADHPYAAAAASALTS-HRSRSKWSHLSSLAVPDP----LPASAVAAVPLLLRRRPHVALS 71

Query: 273 IIPFTASKTLPSLCVPSYFLN 211
              F   + LPS   P   L+
Sbjct: 72  FHLFATRRLLPSGSPPPLLLS 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,251,617
Number of Sequences: 37544
Number of extensions: 195541
Number of successful extensions: 559
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)