Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_I20
(491 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49859| Best HMM Match : No HMM Matches (HMM E-Value=.) 85 4e-17
SB_34186| Best HMM Match : Cyt-b5 (HMM E-Value=2.6e-13) 64 6e-11
SB_8772| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 5e-08
SB_42543| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_10760| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 8e-04
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_26369| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_26365| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_17121| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_54624| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
>SB_49859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 84.6 bits (200), Expect = 4e-17
Identities = 44/102 (43%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Frame = +2
Query: 188 RKDLTVSELRKYDGTQSDGRVLLAVNGIIFDVTKGRRXXXXXXXXXXXXXRDSTRGLATG 367
++D T+ EL++YDG +S VL+AVNG +FDVT+G+ D++RGLAT
Sbjct: 58 KRDFTLDELKEYDGLKSP-YVLMAVNGKVFDVTRGKDFYGPGGPYSNFAGHDASRGLATF 116
Query: 368 QVAA-ADNEEYDPCNDLTPDEIASAKEWEEQFREEYDIVGRL 490
+ A +EYD +DL + S +EWE+QF E+YD+VGRL
Sbjct: 117 SLGPEAIKDEYDDLSDLNGMQQDSLREWEQQFDEKYDLVGRL 158
>SB_34186| Best HMM Match : Cyt-b5 (HMM E-Value=2.6e-13)
Length = 310
Score = 64.1 bits (149), Expect = 6e-11
Identities = 31/98 (31%), Positives = 52/98 (53%)
Frame = +2
Query: 197 LTVSELRKYDGTQSDGRVLLAVNGIIFDVTKGRRXXXXXXXXXXXXXRDSTRGLATGQVA 376
L+ +L K+DG+Q D + +A+ G ++DV KGRR RDST TG
Sbjct: 88 LSTEDLAKHDGSQPDANIYIAILGKVYDVEKGRRFYGPGTGYHVFAGRDSTPSFVTGMFD 147
Query: 377 AADNEEYDPCNDLTPDEIASAKEWEEQFREEYDIVGRL 490
A + D C++L +++ K W E ++++Y VG++
Sbjct: 148 RA--KATDDCSNLKNEDLLGIKGWMEFYQKDYKYVGKV 183
>SB_8772| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 54.4 bits (125), Expect = 5e-08
Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Frame = +2
Query: 191 KDLTVSELRKYDGTQSDGRVLLAVNGIIFDVTKGRRXXXXXXXXXXXXXRDSTRGLATGQ 370
++ TV EL+ YDG + + +AVNG +FDVT +D++R L T
Sbjct: 72 REFTVRELKGYDGVNKE-LIYVAVNGKVFDVTSAWNYFGPAGPDCLLAGKDASRALVTFS 130
Query: 371 V----AAADNEEYDPCNDLTPDEIASAKEWEEQFREEYDIVGRL 490
V + D NDL P + E+E Q+ E Y VGRL
Sbjct: 131 VDNFYQTEQRDSMDDLNDLNPLQRDCLFEYETQYMERYPCVGRL 174
>SB_42543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 45.6 bits (103), Expect = 2e-05
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +2
Query: 197 LTVSELRKYDGTQSDGRVLLAVNGIIFDVTKGRRXXXXXXXXXXXXXRDSTRGLATGQVA 376
L+ +L K+DG Q D + +A+ G ++DV KGRR RDST T V+
Sbjct: 272 LSTVDLVKHDGLQPDANIYIAILGKVYDVEKGRRFYGPGTGYHVFAGRDSTPSFVTVLVS 331
Query: 377 AADNEEYDPC 406
+ + Y C
Sbjct: 332 SVNGLMYPEC 341
>SB_10760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 40.3 bits (90), Expect = 8e-04
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Frame = +2
Query: 191 KDLTVSELRKYDGTQSDGRVLLAVNGIIFDVTKGRRXXXXXXXXXXXXXRDSTRGLATGQ 370
K T EL ++G S+ + +AV G++FDV+ + ++ +R +A
Sbjct: 46 KLFTKDELATFNGRNSNSPIYVAVKGVVFDVSTSKDLYGYGESYNSMAGKECSRAIAKWS 105
Query: 371 VAAAD-NEEYDPCNDLTPDEIAS-AKEWEEQFREEYDIVG 484
+AA + N D LT DE+ K + + + +Y +VG
Sbjct: 106 LAAENMNGNLD---GLTKDELQRLEKNFHDVYMRKYPVVG 142
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -2
Query: 325 CVRSSGSVKPTSLCN 281
CV SGSV PT LCN
Sbjct: 349 CVMQSGSVTPTCLCN 363
>SB_26369| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -3
Query: 483 PTMSYSSLNCSSHSFAEAISSGVKSLHGSYSSLSAAATCPV 361
P ++ NCS ++ + S++G Y++ S + CPV
Sbjct: 205 PAPAFGGSNCSGNTMETEPCDNLCSVNGGYTAWSNWSACPV 245
>SB_26365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -3
Query: 483 PTMSYSSLNCSSHSFAEAISSGVKSLHGSYSSLSAAATCPV 361
P ++ NCS ++ + S++G Y++ S + CPV
Sbjct: 228 PAPAFGGSNCSGNTMETEPCDNLCSVNGGYTAWSNWSACPV 268
>SB_17121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 596
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 368 QVAAADNEEYDPCNDLTPDEIASAKEWEEQ 457
++A +EYDP DL P ++SAKE Q
Sbjct: 143 KIACKVRDEYDPIKDLVP--VSSAKETHGQ 170
>SB_54624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 59
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -3
Query: 459 NCSSHSFAEAISSGVKSLHGSYSSLSAAATCPVAKPRVESLPAKA 325
+C S E S ++ + G SS SAA TC + V LP ++
Sbjct: 9 DCDSRLLVEDFSDLLQDVPGYCSSWSAARTCFSTRLHVNHLPMES 53
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,317,040
Number of Sequences: 59808
Number of extensions: 233156
Number of successful extensions: 575
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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