Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I20
         (491 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41552-5|AAP82646.1|  183|Caenorhabditis elegans Vema (mammalian...    74   7e-14
U41552-4|AAD31555.1|  198|Caenorhabditis elegans Vema (mammalian...    74   7e-14
AL024499-6|CAA19709.1|  326|Caenorhabditis elegans Hypothetical ...    43   1e-04
AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical...    29   2.4  
Z81517-3|CAB04210.1|  802|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U42830-3|AAC48275.1|  195|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AL132904-18|CAC35853.1|  457|Caenorhabditis elegans Hypothetical...    27   7.4  
AF016655-12|AAK31438.3| 1143|Caenorhabditis elegans Guanylyl cyc...    27   9.8  

>U41552-5|AAP82646.1|  183|Caenorhabditis elegans Vema (mammalian
           ventral midlineantigen) related protein 1, isoform b
           protein.
          Length = 183

 Score = 73.7 bits (173), Expect = 7e-14
 Identities = 39/99 (39%), Positives = 56/99 (56%)
 Frame = +2

Query: 194 DLTVSELRKYDGTQSDGRVLLAVNGIIFDVTKGRRXXXXXXXXXXXXXRDSTRGLATGQV 373
           D+TV ELRKYDG +++  +L  +NG I+DVT+G+               D+TR L T   
Sbjct: 49  DMTVEELRKYDGVKNE-HILFGLNGTIYDVTRGKGFYGPGKAYGTLAGHDATRALGTMDQ 107

Query: 374 AAADNEEYDPCNDLTPDEIASAKEWEEQFREEYDIVGRL 490
            A  +E +D    ++ DE  +A EWE QF+ +Y  VGRL
Sbjct: 108 NAVSSE-WDDHTGISADEQETANEWETQFKFKYLTVGRL 145


>U41552-4|AAD31555.1|  198|Caenorhabditis elegans Vema (mammalian
           ventral midlineantigen) related protein 1, isoform a
           protein.
          Length = 198

 Score = 73.7 bits (173), Expect = 7e-14
 Identities = 39/99 (39%), Positives = 56/99 (56%)
 Frame = +2

Query: 194 DLTVSELRKYDGTQSDGRVLLAVNGIIFDVTKGRRXXXXXXXXXXXXXRDSTRGLATGQV 373
           D+TV ELRKYDG +++  +L  +NG I+DVT+G+               D+TR L T   
Sbjct: 64  DMTVEELRKYDGVKNE-HILFGLNGTIYDVTRGKGFYGPGKAYGTLAGHDATRALGTMDQ 122

Query: 374 AAADNEEYDPCNDLTPDEIASAKEWEEQFREEYDIVGRL 490
            A  +E +D    ++ DE  +A EWE QF+ +Y  VGRL
Sbjct: 123 NAVSSE-WDDHTGISADEQETANEWETQFKFKYLTVGRL 160


>AL024499-6|CAA19709.1|  326|Caenorhabditis elegans Hypothetical
           protein H38K22.3 protein.
          Length = 326

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 24/95 (25%), Positives = 44/95 (46%)
 Frame = +2

Query: 200 TVSELRKYDGTQSDGRVLLAVNGIIFDVTKGRRXXXXXXXXXXXXXRDSTRGLATGQVAA 379
           T  +L  +DGT+    + LA+ G +++V   +              RD+TR   TG    
Sbjct: 102 TPEQLHFFDGTRDSKPIYLAILGRVYNVDGKKEYYGPGKSYHHFAGRDATRAFTTGDF-- 159

Query: 380 ADNEEYDPCNDLTPDEIASAKEWEEQFREEYDIVG 484
            ++      + L+ DE+ S ++W   + +EY +VG
Sbjct: 160 QESGLIATTHGLSHDELLSIRDWVSFYDKEYPLVG 194


>AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical
           protein Y67D8C.9 protein.
          Length = 1073

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 359 ATGQVAAADNEEYDPCNDLTPDEIASAKEWEEQFR 463
           AT  ++   N++Y   +++ P E    K WE+QF+
Sbjct: 261 ATFNISVRHNKKYTVLSNMPPVESHDHKSWEDQFK 295


>Z81517-3|CAB04210.1|  802|Caenorhabditis elegans Hypothetical
           protein F28B1.3 protein.
          Length = 802

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 411 SLHGSYSSLSAAATCPVAKPRVESLPAKA 325
           S++G  + LS A  CP +KP +   PA++
Sbjct: 237 SVYGDLAYLSYALRCPCSKPTIFKSPAES 265


>U42830-3|AAC48275.1|  195|Caenorhabditis elegans Hypothetical
           protein C53B7.2 protein.
          Length = 195

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 341 DSTRGLATGQVAAADNEEYDPCNDLTP 421
           DS     T QV+   NE+Y PC  + P
Sbjct: 17  DSQYHQTTTQVSCGINEQYSPCTQMCP 43


>AL132904-18|CAC35853.1|  457|Caenorhabditis elegans Hypothetical
           protein Y111B2A.24 protein.
          Length = 457

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = -3

Query: 486 RPTMSYSSLNCSSHSFAEAISSGVK-SLHGSYSSLSAAATCPVAKPRVESLPAKAAYXXX 310
           R T S SS  C +HS ++++ S  K S   S SS +A +        V S+PA +     
Sbjct: 105 RRTRSRSSSRCRAHS-SQSLGSATKDSARASASSSAAPSEIHKRSQSVTSIPAASTSTTT 163

Query: 309 XX*NRRP 289
                RP
Sbjct: 164 PTPILRP 170


>AF016655-12|AAK31438.3| 1143|Caenorhabditis elegans Guanylyl cyclase
            protein 19 protein.
          Length = 1143

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 85   SFTLSYSVPHLQNYKIKFRIGCCLAAC 165
            S+  S+ +PHL   K++ RIG     C
Sbjct: 938  SYCKSFKIPHLPREKVELRIGVNSGPC 964


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,806,200
Number of Sequences: 27780
Number of extensions: 172670
Number of successful extensions: 547
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)