BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_I19 (468 letters) Database: uniref50 1,657,284 sequences; 575,637,011 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value UniRef50_P19404 Cluster: NADH dehydrogenase [ubiquinone] flavopr... 181 8e-45 UniRef50_O22769 Cluster: NADH-ubiquinone oxidoreductase 24 kDa s... 144 1e-33 UniRef50_Q5ACX6 Cluster: Potential mitochondrial Complex I, NUHM... 143 1e-33 UniRef50_Q9UUT9 Cluster: Subunit NUHM of protein NADH:Ubiquinone... 139 3e-32 UniRef50_Q6V9B3 Cluster: NADH:ubiquinone oxidoreductase 24 kD su... 137 1e-31 UniRef50_Q2TZN8 Cluster: NADH:ubiquinone oxidoreductase; n=11; P... 137 1e-31 UniRef50_Q54F10 Cluster: NADH dehydrogenase; n=1; Dictyostelium ... 132 4e-30 UniRef50_Q00RX3 Cluster: Putative NADH-ubiquinone oxidoreductase... 129 3e-29 UniRef50_Q4UM09 Cluster: NADH-quinone oxidoreductase subunit E; ... 128 5e-29 UniRef50_A0E600 Cluster: Chromosome undetermined scaffold_8, who... 126 2e-28 UniRef50_Q4QEG7 Cluster: NADH-ubiquinone oxidoreductase, mitocho... 120 1e-26 UniRef50_Q2GDD2 Cluster: NADH dehydrogenase I, E subunit; n=1; N... 118 8e-26 UniRef50_Q5DLW2 Cluster: Hydrogenosomal NADH dehydrogenase 24 kD... 117 1e-25 UniRef50_Q9VVF0 Cluster: CG6485-PA; n=2; Sophophora|Rep: CG6485-... 117 1e-25 UniRef50_Q1GTK2 Cluster: NADH-quinone oxidoreductase, E subunit;... 116 3e-25 UniRef50_Q0BSK6 Cluster: NADH-quinone oxidoreductase chain E; n=... 115 6e-25 UniRef50_A5NY87 Cluster: NADH-quinone oxidoreductase, E subunit;... 109 3e-23 UniRef50_A5CES4 Cluster: NADH dehydrogenase I chain E; n=1; Orie... 109 3e-23 UniRef50_Q0C8X0 Cluster: Putative uncharacterized protein; n=1; ... 101 6e-21 UniRef50_A7DLV4 Cluster: NADH-quinone oxidoreductase, E subunit;... 100 1e-20 UniRef50_Q83BQ9 Cluster: NADH dehydrogenase I, E subunit; n=3; C... 98 1e-19 UniRef50_A3UCV4 Cluster: ATP synthase subunit E; n=4; Alphaprote... 98 1e-19 UniRef50_Q5FGV2 Cluster: NADH-quinone oxidoreductase chain E; n=... 97 2e-19 UniRef50_Q8G1B3 Cluster: NADH dehydrogenase I, E subunit; n=9; R... 96 4e-19 UniRef50_Q11VB6 Cluster: NADH dehydrogenase I chain E; n=2; Bact... 93 4e-18 UniRef50_P56909 Cluster: NADH-quinone oxidoreductase subunit E 1... 92 6e-18 UniRef50_A6H1R0 Cluster: NADH dehydrogenase I, E subunit; n=2; B... 91 1e-17 UniRef50_Q98KQ9 Cluster: NADH-ubiquinone dehydrogenase chain E 1... 90 3e-17 UniRef50_A3U1M2 Cluster: ATP synthase subunit E; n=9; Alphaprote... 88 1e-16 UniRef50_A2F771 Cluster: Respiratory-chain NADH dehydrogenase 24... 85 6e-16 UniRef50_P29914 Cluster: NADH-quinone oxidoreductase chain 2; n=... 83 4e-15 UniRef50_P56910 Cluster: NADH-quinone oxidoreductase subunit E 2... 79 6e-14 UniRef50_Q9PGJ1 Cluster: NADH-ubiquinone oxidoreductase, NQO2 su... 78 8e-14 UniRef50_Q0PQQ4 Cluster: NADH dehydrogenase I E subunit; n=1; En... 78 8e-14 UniRef50_Q82TU7 Cluster: Respiratory-chain NADH dehydrogenase 24... 77 1e-13 UniRef50_A1WXW3 Cluster: NADH-quinone oxidoreductase, E subunit;... 77 1e-13 UniRef50_Q6MIR6 Cluster: NADH dehydrogenase I chain E; n=1; Bdel... 76 3e-13 UniRef50_A5UZH6 Cluster: NADH-quinone oxidoreductase, E subunit;... 75 6e-13 UniRef50_Q02CT9 Cluster: NADH-quinone oxidoreductase, E subunit;... 74 1e-12 UniRef50_A6FCN2 Cluster: NuoE2 NADH I CHAIN E; n=1; Moritella sp... 74 1e-12 UniRef50_Q67P18 Cluster: NADH dehydrogenase I subunit E; n=1; Sy... 73 2e-12 UniRef50_A7CUG1 Cluster: NADH-quinone oxidoreductase, E subunit;... 72 7e-12 UniRef50_A4SXP9 Cluster: NADH-quinone oxidoreductase, E subunit;... 71 1e-11 UniRef50_Q2JFL6 Cluster: NADH-quinone oxidoreductase, E subunit;... 70 3e-11 UniRef50_Q092T1 Cluster: NADH-ubiquinone oxidoreductase 24 kDa s... 69 4e-11 UniRef50_Q6MDR2 Cluster: Putative NADH-ubiquinone oxidoreductase... 68 9e-11 UniRef50_Q2LQE7 Cluster: NADH-quinone oxidoreductase chain F; n=... 67 2e-10 UniRef50_A3THI9 Cluster: ATP synthase subunit E; n=3; Actinomyce... 66 4e-10 UniRef50_A1AVR6 Cluster: NADH-quinone oxidoreductase, E subunit;... 66 5e-10 UniRef50_Q0EZQ5 Cluster: NADH dehydrogenase I chain E; n=1; Mari... 64 1e-09 UniRef50_P0AFD3 Cluster: NADH-quinone oxidoreductase subunit E; ... 64 1e-09 UniRef50_Q0AZ71 Cluster: NADH:ubiquinone oxidoreductase 24 kD su... 64 1e-09 UniRef50_A7HII1 Cluster: NADH-quinone oxidoreductase, E subunit;... 63 3e-09 UniRef50_Q6A6G2 Cluster: NADH dehydrogenase I chain E; n=1; Prop... 63 3e-09 UniRef50_A7HLQ9 Cluster: NADH-quinone oxidoreductase, E subunit;... 63 3e-09 UniRef50_Q746S5 Cluster: NADH dehydrogenase I, E subunit; n=4; D... 62 8e-09 UniRef50_Q2LYE8 Cluster: NADH:ubiquinone oxidoreductase 24 kD su... 62 8e-09 UniRef50_A3ERJ3 Cluster: NADH ubiquinone oxidoreductase 24 kD su... 62 8e-09 UniRef50_Q5JIQ1 Cluster: NADH:ubiquinone oxidoreductase, subunit... 62 8e-09 UniRef50_Q9WXM7 Cluster: NADP-reducing hydrogenase, subunit A; n... 61 1e-08 UniRef50_Q8ABI7 Cluster: NADH-ubiquinone oxidoreductase subunit;... 61 1e-08 UniRef50_Q3ZXM4 Cluster: Hydrogenase subunit HymA; n=13; cellula... 61 1e-08 UniRef50_A6PRE1 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 61 1e-08 UniRef50_A4J528 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 61 1e-08 UniRef50_P65574 Cluster: NADH-quinone oxidoreductase subunit E; ... 60 2e-08 UniRef50_Q608Y0 Cluster: NADH dehydrogenase I, E subunit; n=5; B... 59 4e-08 UniRef50_A4J9N9 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 59 4e-08 UniRef50_Q3A640 Cluster: NADH:ubiquinone oxidoreductase 24 kD su... 58 7e-08 UniRef50_Q1EVZ9 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 58 1e-07 UniRef50_A0UV12 Cluster: NADH-quinone oxidoreductase, E subunit;... 58 1e-07 UniRef50_O27591 Cluster: NADP-reducing hydrogenase, subunit A; n... 58 1e-07 UniRef50_O13691 Cluster: Probable NADH-ubiquinone oxidoreductase... 58 1e-07 UniRef50_Q1PYY2 Cluster: Similar to nuoE subunit of the NADH:ubi... 57 2e-07 UniRef50_Q67JG1 Cluster: Putative iron hydrogenase small subunit... 57 2e-07 UniRef50_A5FSK9 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 56 3e-07 UniRef50_Q9S5X7 Cluster: Fe-hydrogenase, subunit gamma; n=5; The... 56 4e-07 UniRef50_Q1NQY7 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 56 4e-07 UniRef50_A5FS13 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 56 4e-07 UniRef50_Q7NZH7 Cluster: NADH-ubiquinone oxidoreductase, chain E... 56 5e-07 UniRef50_Q1PWG7 Cluster: Similar to to proton-translocating NADH... 56 5e-07 UniRef50_A1HP41 Cluster: NADH-quinone oxidoreductase, E subunit;... 56 5e-07 UniRef50_Q8YYU5 Cluster: NADH dehydrogenase I chain E; n=4; Bact... 55 9e-07 UniRef50_Q1PW48 Cluster: Similar to NADH:ubiquinone oxidoreducta... 54 1e-06 UniRef50_A5D2H5 Cluster: NADH:ubiquinone oxidoreductase 24 kD su... 54 1e-06 UniRef50_Q9RU91 Cluster: NADH dehydrogenase I, E subunit; n=2; D... 54 2e-06 UniRef50_Q8RBD2 Cluster: NADH:ubiquinone oxidoreductase 24 kD su... 54 2e-06 UniRef50_Q6FE68 Cluster: NADH dehydrogenase I chain E; n=5; Mora... 54 2e-06 UniRef50_Q0AWA4 Cluster: NADH:ubiquinone oxidoreductase 24 kD su... 54 2e-06 UniRef50_Q89AU3 Cluster: NADH-quinone oxidoreductase subunit E; ... 54 2e-06 UniRef50_Q1IS36 Cluster: NADH-quinone oxidoreductase, E subunit;... 53 3e-06 UniRef50_Q01WJ0 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 53 4e-06 UniRef50_A0UVM6 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 53 4e-06 UniRef50_Q2FP98 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 53 4e-06 UniRef50_A5V6C3 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 52 5e-06 UniRef50_Q3A461 Cluster: NADP-reducing hydrogenase chain A; n=5;... 52 6e-06 UniRef50_A0LJN9 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 52 6e-06 UniRef50_Q2RHR8 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 52 8e-06 UniRef50_Q2AG84 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 52 8e-06 UniRef50_Q4AMU5 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 51 1e-05 UniRef50_Q0PIE2 Cluster: NAD(P)H-quinone oxidoreductase 24 kDa s... 51 1e-05 UniRef50_A0LLS9 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 51 1e-05 UniRef50_A7IL17 Cluster: NADH dehydrogenase (Ubiquinone) 24 kDa ... 50 2e-05 UniRef50_A5UZ48 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 50 2e-05 UniRef50_A1ALP3 Cluster: NADH-quinone oxidoreductase, E subunit;... 50 2e-05 UniRef50_Q4AHT8 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 50 3e-05 UniRef50_O66842 Cluster: NADH-quinone oxidoreductase subunit E; ... 50 3e-05 UniRef50_Q749M0 Cluster: NAD-reducing hydrogenase, putative; n=4... 49 4e-05 UniRef50_Q2C5T5 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 49 4e-05 UniRef50_Q98BW7 Cluster: NAD-dependent formate dehydrogenase gam... 49 6e-05 UniRef50_Q835I9 Cluster: NAD-dependent formate dehydrogenase, ga... 48 8e-05 UniRef50_Q2LS97 Cluster: NADH-quinone oxidoreductase chain F; n=... 48 8e-05 UniRef50_Q6SGN4 Cluster: NADH-quinone oxidoreductase, E subunit;... 48 8e-05 UniRef50_Q89QJ0 Cluster: NADH dehydrogenase I chain E; n=16; Alp... 48 1e-04 UniRef50_A3JB74 Cluster: ATP synthase subunit E; n=1; Marinobact... 48 1e-04 UniRef50_A0QNT7 Cluster: Formate dehydrogenase, gamma subunit; n... 48 1e-04 UniRef50_Q6N1Z1 Cluster: NADH-ubiquinone dehydrogenase chain E; ... 47 2e-04 UniRef50_A0LGJ1 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 47 2e-04 UniRef50_Q74GA4 Cluster: NADH dehydrogenase I, E subunit; n=6; G... 46 3e-04 UniRef50_Q0AVX7 Cluster: Fe-hydrogenase, gamma subunit; n=4; Syn... 46 3e-04 UniRef50_A6PPY8 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 46 4e-04 UniRef50_A3YBB2 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 46 4e-04 UniRef50_Q47WZ1 Cluster: Formate dehydrogenase, gamma subunit; n... 46 5e-04 UniRef50_A4M6K3 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 46 5e-04 UniRef50_A3ETZ6 Cluster: NADH ubiquinone oxidoreductase; n=1; Le... 45 0.001 UniRef50_A1AP34 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 45 0.001 UniRef50_A0J5R7 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 45 0.001 UniRef50_Q9ZBV8 Cluster: Putative respiratory chain oxidoreducta... 44 0.002 UniRef50_Q2S5I9 Cluster: NADH-ubiquinone oxidoreductase 24 kDa s... 44 0.002 UniRef50_Q608U6 Cluster: Formate dehydrogenase, gamma subunit; n... 44 0.002 UniRef50_A1FMP2 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 44 0.002 UniRef50_A3DCI7 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 43 0.003 UniRef50_Q057X2 Cluster: NADH dehydrogenase I chain E; n=1; Buch... 42 0.005 UniRef50_A6PMG8 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 42 0.005 UniRef50_A0RMD2 Cluster: Hydrogenosomal NADH dehydrogenase 24 kD... 42 0.005 UniRef50_UPI0000E87F9D Cluster: ATP synthase subunit E; n=1; Met... 42 0.009 UniRef50_Q28P85 Cluster: NADH dehydrogenase (Ubiquinone) 24 kDa ... 42 0.009 UniRef50_A6VXL9 Cluster: NADH dehydrogenase (Ubiquinone) 24 kDa ... 42 0.009 UniRef50_A3Z0U6 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 40 0.021 UniRef50_Q1VMJ2 Cluster: Formate dehydrogenase, beta subunit; n=... 38 0.083 UniRef50_Q483I3 Cluster: Formate dehydrogenase, gamma subunit; n... 38 0.11 UniRef50_Q0AL75 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 38 0.14 UniRef50_A4XP94 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 37 0.19 UniRef50_Q63RZ3 Cluster: NAD-dependent formate dehydrogenase gam... 36 0.33 UniRef50_Q5P4U3 Cluster: Formate dehydrogenase, NAD(P) reducing,... 36 0.58 UniRef50_Q47HE6 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 36 0.58 UniRef50_A7RRZ0 Cluster: Predicted protein; n=1; Nematostella ve... 33 3.1 UniRef50_Q5NPV1 Cluster: Two-component response regulator; n=3; ... 32 5.4 UniRef50_Q9Z5S2 Cluster: Torf protein; n=2; Zymomonas mobilis|Re... 32 5.4 UniRef50_A1WBG0 Cluster: NADH dehydrogenase (Quinone) precursor;... 32 7.2 UniRef50_Q55Y42 Cluster: Putative uncharacterized protein; n=1; ... 32 7.2 UniRef50_A5I5J7 Cluster: Sensor protein; n=4; Clostridium botuli... 31 9.5 >UniRef50_P19404 Cluster: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial precursor; n=64; cellular organisms|Rep: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial precursor - Homo sapiens (Human) Length = 249 Score = 181 bits (440), Expect = 8e-45 Identities = 79/111 (71%), Positives = 95/111 (85%) Frame = +2 Query: 134 SLFVHRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPI 313 +LFVHRDTPE+NP PF+FT N KR+EA++ YPEGHK A++P+LDLAQR NG WLPI Sbjct: 37 ALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNG-WLPI 95 Query: 314 SAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 SAM+KVAE+L +P MRVYEVATFYTM+ R+P+GKYH+QVCTTTPC LR SD Sbjct: 96 SAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSD 146 >UniRef50_O22769 Cluster: NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor; n=8; Viridiplantae|Rep: NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor - Arabidopsis thaliana (Mouse-ear cress) Length = 255 Score = 144 bits (348), Expect = 1e-33 Identities = 60/110 (54%), Positives = 86/110 (78%) Frame = +2 Query: 134 SLFVHRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPI 313 +L H D+P++ P +P+EF+ NQ +V+ +L+ YP +K+ A+IPLLDLAQ+ NGGWLP+ Sbjct: 31 ALNYHLDSPDNKPDLPWEFSEANQSKVKEILSYYPSNYKQSAVIPLLDLAQQQNGGWLPV 90 Query: 314 SAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463 SAM+ VA+++ + +RVYEVATFY+MF R +GKYH+ VC TTPC +RGS Sbjct: 91 SAMNAVAKVIEVAPIRVYEVATFYSMFNRAKVGKYHLLVCGTTPCMIRGS 140 >UniRef50_Q5ACX6 Cluster: Potential mitochondrial Complex I, NUHM_24kd subunit; n=5; Saccharomycetales|Rep: Potential mitochondrial Complex I, NUHM_24kd subunit - Candida albicans (Yeast) Length = 243 Score = 143 bits (347), Expect = 1e-33 Identities = 67/108 (62%), Positives = 85/108 (78%) Frame = +2 Query: 143 VHRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAM 322 VHRDT EDNP+I FEF + N+KR E ++A YP +K+GA +PLLDL QR G + IS M Sbjct: 31 VHRDTKEDNPNIAFEFNSENKKRAEEIIAKYPPQYKKGACMPLLDLGQRQLG-FTSISVM 89 Query: 323 HKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 + VA++L++P MRVYEVATFYTM+ R P+GKY++QVCTTTPC L GSD Sbjct: 90 NYVAKLLDMPPMRVYEVATFYTMYNRHPMGKYNLQVCTTTPCQLCGSD 137 >UniRef50_Q9UUT9 Cluster: Subunit NUHM of protein NADH:Ubiquinone Oxidoreductase; n=3; Fungi/Metazoa group|Rep: Subunit NUHM of protein NADH:Ubiquinone Oxidoreductase - Yarrowia lipolytica (Candida lipolytica) Length = 243 Score = 139 bits (336), Expect = 3e-32 Identities = 63/108 (58%), Positives = 83/108 (76%) Frame = +2 Query: 143 VHRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAM 322 VHR+T +NPSIPFEF+ N KR E ++A YP +K+ A++PLLD+ QR G + IS M Sbjct: 32 VHRNTENNNPSIPFEFSPENMKRAEEVIAKYPPQYKKAAVMPLLDIGQRQLG-YTSISVM 90 Query: 323 HKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 + VA++L +P MRVYEVATFYTM+ R P+G+YH+Q+CTTTPC L GSD Sbjct: 91 NYVAKLLEMPPMRVYEVATFYTMYNRTPMGRYHLQICTTTPCQLCGSD 138 >UniRef50_Q6V9B3 Cluster: NADH:ubiquinone oxidoreductase 24 kD subunit; n=2; cellular organisms|Rep: NADH:ubiquinone oxidoreductase 24 kD subunit - Chlamydomonas reinhardtii Length = 282 Score = 137 bits (332), Expect = 1e-31 Identities = 60/111 (54%), Positives = 84/111 (75%) Frame = +2 Query: 131 DSLFVHRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLP 310 D +H+DTPE+N + FEF+ K V ++A YP +K+ A+IP+LD+ Q+ NGGWL Sbjct: 46 DIFNIHKDTPENNAATSFEFSEATLKVVNDIIARYPPNYKQSAIIPVLDVTQQENGGWLS 105 Query: 311 ISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463 ++AM++VA++L++ +RVYEVATFYTMF R IGKYHVQ+C TTPC L+GS Sbjct: 106 LAAMNRVAKLLDMAPIRVYEVATFYTMFNRTKIGKYHVQICGTTPCRLQGS 156 >UniRef50_Q2TZN8 Cluster: NADH:ubiquinone oxidoreductase; n=11; Pezizomycotina|Rep: NADH:ubiquinone oxidoreductase - Aspergillus oryzae Length = 270 Score = 137 bits (331), Expect = 1e-31 Identities = 63/110 (57%), Positives = 82/110 (74%) Frame = +2 Query: 131 DSLFVHRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLP 310 DSL VHR+ P +NPSIPF F NQ+ ++ +L YP +K+ A++PLLDL QR +G + Sbjct: 37 DSLSVHRNKPTNNPSIPFTFNEQNQRLIDEILKRYPPQYKKAAVMPLLDLGQRQHG-FTS 95 Query: 311 ISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRG 460 IS M++VA +L +P MRVYEVATFYTM+ R P+GKY VQ+CTTTPC L G Sbjct: 96 ISVMNEVARLLEMPPMRVYEVATFYTMYNREPVGKYFVQLCTTTPCQLGG 145 >UniRef50_Q54F10 Cluster: NADH dehydrogenase; n=1; Dictyostelium discoideum AX4|Rep: NADH dehydrogenase - Dictyostelium discoideum AX4 Length = 247 Score = 132 bits (319), Expect = 4e-30 Identities = 62/111 (55%), Positives = 79/111 (71%) Frame = +2 Query: 131 DSLFVHRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLP 310 D+L H +T ++N PF+FT N +VE +LA YP+ +++ A+IPLLDLAQR NGGW+ Sbjct: 35 DALSRHVETEDNNEHTPFDFTQENLVKVEKILAKYPKQYRQSALIPLLDLAQRQNGGWIS 94 Query: 311 ISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463 + AM KVA I + M YEVA+FYTMF R IG+ VQVCTTTPC LRGS Sbjct: 95 LRAMDKVAHICGIAPMTAYEVASFYTMFNRTKIGENFVQVCTTTPCMLRGS 145 >UniRef50_Q00RX3 Cluster: Putative NADH-ubiquinone oxidoreductase; n=1; Ostreococcus tauri|Rep: Putative NADH-ubiquinone oxidoreductase - Ostreococcus tauri Length = 265 Score = 129 bits (311), Expect = 3e-29 Identities = 59/107 (55%), Positives = 79/107 (73%) Frame = +2 Query: 143 VHRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAM 322 VHRD PEDN ++ + F A + +V+A+L YP +KR AMIPLLDLAQ+ N G L ++ M Sbjct: 26 VHRDVPEDNSTMTWTFEASVRPKVDAILRRYPSNYKRSAMIPLLDLAQQQNKGHLTLAMM 85 Query: 323 HKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463 + +A++L + +RVYEVATFY+MF R+ +GK HV VC TTPC LRGS Sbjct: 86 NHIADVLEVAPIRVYEVATFYSMFNRQKMGKLHVMVCGTTPCMLRGS 132 >UniRef50_Q4UM09 Cluster: NADH-quinone oxidoreductase subunit E; n=18; Alphaproteobacteria|Rep: NADH-quinone oxidoreductase subunit E - Rickettsia felis (Rickettsia azadi) Length = 167 Score = 128 bits (310), Expect = 5e-29 Identities = 57/98 (58%), Positives = 69/98 (70%) Frame = +2 Query: 173 SIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLP 352 S F F N E ++ YP KR A++PLLDLAQR NGGWLP+ A+ VA +L +P Sbjct: 2 STNFTFDKKNLNLAEDIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMP 61 Query: 353 RMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 MR YEVATFY+MF + +GKYH+QVCTTTPCWL GSD Sbjct: 62 YMRAYEVATFYSMFNLKRVGKYHIQVCTTTPCWLHGSD 99 >UniRef50_A0E600 Cluster: Chromosome undetermined scaffold_8, whole genome shotgun sequence; n=5; Oligohymenophorea|Rep: Chromosome undetermined scaffold_8, whole genome shotgun sequence - Paramecium tetraurelia Length = 263 Score = 126 bits (304), Expect = 2e-28 Identities = 57/111 (51%), Positives = 81/111 (72%), Gaps = 1/111 (0%) Frame = +2 Query: 134 SLFV-HRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLP 310 ++FV HR+ +++ S+PF+FT N K++EA+LA +P K+ IPLL LAQ+ N +L Sbjct: 19 NIFVAHRNRDDNSDSVPFDFTDENYKKIEAILAKFPSNEKKSGTIPLLMLAQKQNNNFLS 78 Query: 311 ISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463 +SAM K+A+IL +P M VYE A+FY+MF R +GK+H+QVC TTPC L GS Sbjct: 79 LSAMKKIAKILEIPEMDVYETASFYSMFNRERVGKFHLQVCGTTPCQLCGS 129 >UniRef50_Q4QEG7 Cluster: NADH-ubiquinone oxidoreductase, mitochondrial, putative; n=6; Trypanosomatidae|Rep: NADH-ubiquinone oxidoreductase, mitochondrial, putative - Leishmania major Length = 273 Score = 120 bits (290), Expect = 1e-26 Identities = 51/108 (47%), Positives = 76/108 (70%), Gaps = 1/108 (0%) Frame = +2 Query: 146 HRDTPEDNPSIPFEFTAPNQKRVE-ALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAM 322 H++T DN IP++FT + +++ +L +P G + A IPLL LAQ+ GG++P++AM Sbjct: 40 HQNTDYDNTRIPWDFTTSSYEKIHNEILPKFPRGRRISATIPLLHLAQQQQGGYIPVTAM 99 Query: 323 HKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 +K+A+I +P M V+E TFY+MF R P+GKYH+Q C TTPC L G+D Sbjct: 100 YKIAKICEVPPMHVFETVTFYSMFNRHPVGKYHIQFCRTTPCMLCGAD 147 >UniRef50_Q2GDD2 Cluster: NADH dehydrogenase I, E subunit; n=1; Neorickettsia sennetsu str. Miyayama|Rep: NADH dehydrogenase I, E subunit - Neorickettsia sennetsu (strain Miyayama) Length = 181 Score = 118 bits (283), Expect = 8e-26 Identities = 51/95 (53%), Positives = 69/95 (72%) Frame = +2 Query: 182 FEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMR 361 F F+ N + V +LA YP KR A++PLL L QR + W+PI+AM VA++L LP ++ Sbjct: 24 FCFSEENSREVARILAKYPASRKRSAVLPLLHLVQRQHENWIPIAAMDHVAQLLGLPVIK 83 Query: 362 VYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 VYEVA+FY+MF P+GK+ ++VC TTPCWLRGSD Sbjct: 84 VYEVASFYSMFNTAPVGKHTIRVCRTTPCWLRGSD 118 >UniRef50_Q5DLW2 Cluster: Hydrogenosomal NADH dehydrogenase 24 kDa subunit; n=1; Nyctotherus ovalis|Rep: Hydrogenosomal NADH dehydrogenase 24 kDa subunit - Nyctotherus ovalis Length = 259 Score = 117 bits (282), Expect = 1e-25 Identities = 53/109 (48%), Positives = 75/109 (68%) Frame = +2 Query: 137 LFVHRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPIS 316 L H +TPE+N FEFT N K + +LL YP+ +K+ A++ LL LAQ+ NG +L ++ Sbjct: 26 LVTHHETPENNDDTYFEFTPENYKIINSLLKRYPDNYKKSAVLYLLHLAQKQNGNFLTLA 85 Query: 317 AMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463 AM+KVA+IL + + VYEVA FY+MF R +GK +Q+C TTPC L G+ Sbjct: 86 AMNKVAKILEMTNLNVYEVAAFYSMFNREKVGKIRLQICGTTPCLLCGA 134 >UniRef50_Q9VVF0 Cluster: CG6485-PA; n=2; Sophophora|Rep: CG6485-PA - Drosophila melanogaster (Fruit fly) Length = 238 Score = 117 bits (281), Expect = 1e-25 Identities = 55/102 (53%), Positives = 71/102 (69%) Frame = +2 Query: 161 EDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEI 340 E ++ FEF+ NQ+RV+ALLA YP+ +GA++PLLD+AQR G WL ISA+ VAE Sbjct: 27 EIRKALKFEFSKDNQRRVKALLAWYPQAEWKGALLPLLDIAQRQQG-WLSISAVQAVAET 85 Query: 341 LNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 + + M +E A FYTMF +P GKY V VCT+TPC LRG D Sbjct: 86 IKIDPMEAFEAAQFYTMFFMKPRGKYVVSVCTSTPCKLRGGD 127 >UniRef50_Q1GTK2 Cluster: NADH-quinone oxidoreductase, E subunit; n=8; Alphaproteobacteria|Rep: NADH-quinone oxidoreductase, E subunit - Sphingopyxis alaskensis (Sphingomonas alaskensis) Length = 222 Score = 116 bits (279), Expect = 3e-25 Identities = 55/101 (54%), Positives = 72/101 (71%), Gaps = 6/101 (5%) Frame = +2 Query: 182 FEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNG------GWLPISAMHKVAEIL 343 F +TA N ++ +A++A YP G +R A++PLLDLAQR G GWLP+ + VA L Sbjct: 20 FAWTAENAEKAKAVIARYPAGRQRSAVMPLLDLAQRQVGAETQTQGWLPVPVIEYVAAQL 79 Query: 344 NLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 ++P +R YEVATFYTM+ P+G+YHVQVC TTPC LRGSD Sbjct: 80 DMPFIRAYEVATFYTMYNLAPVGRYHVQVCGTTPCLLRGSD 120 >UniRef50_Q0BSK6 Cluster: NADH-quinone oxidoreductase chain E; n=5; Rhodospirillales|Rep: NADH-quinone oxidoreductase chain E - Granulobacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) Length = 227 Score = 115 bits (276), Expect = 6e-25 Identities = 51/100 (51%), Positives = 71/100 (71%), Gaps = 5/100 (5%) Frame = +2 Query: 182 FEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNG-----GWLPISAMHKVAEILN 346 F F +++R+E +LA YP + A++PLLDLAQR G W+P +AM ++A L Sbjct: 20 FSFDVQSEQRIEIILAKYPPARRASAVMPLLDLAQRQMGRETGSAWIPRAAMDEIARRLG 79 Query: 347 LPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 + +RVYEVATFY M+ RP+G++H+Q+CTTTPCWLRGSD Sbjct: 80 MAPIRVYEVATFYFMYNTRPVGRHHLQLCTTTPCWLRGSD 119 >UniRef50_A5NY87 Cluster: NADH-quinone oxidoreductase, E subunit; n=1; Methylobacterium sp. 4-46|Rep: NADH-quinone oxidoreductase, E subunit - Methylobacterium sp. 4-46 Length = 394 Score = 109 bits (262), Expect = 3e-23 Identities = 52/105 (49%), Positives = 66/105 (62%) Frame = +2 Query: 149 RDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHK 328 R P + F FT N + EA +A YPEG + A+IPLL AQ NGGWLP A+ Sbjct: 5 RLAPAEQQPAAFAFTPENARWAEAQIAKYPEGRQASAVIPLLWRAQEQNGGWLPQKAIEA 64 Query: 329 VAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463 VA+ L +P +RV EVATFYTMF P+G+Y +QVC T PC + G+ Sbjct: 65 VADELGMPHIRVLEVATFYTMFALEPVGRYWIQVCGTVPCDVCGA 109 >UniRef50_A5CES4 Cluster: NADH dehydrogenase I chain E; n=1; Orientia tsutsugamushi Boryong|Rep: NADH dehydrogenase I chain E - Orientia tsutsugamushi (strain Boryong) (Rickettsia tsutsugamushi) Length = 192 Score = 109 bits (262), Expect = 3e-23 Identities = 49/96 (51%), Positives = 66/96 (68%), Gaps = 2/96 (2%) Frame = +2 Query: 185 EFTAPNQKRVEALLAI--YPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRM 358 EF+ N+ V A I YP G + A++ +LDLAQ N WL S + VA +L +P + Sbjct: 8 EFSFSNETLVIAKKIINNYPAGKEASAVLAILDLAQNQNNNWLSNSCIEYVANLLKMPYI 67 Query: 359 RVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 +VYE+A+FYTMF +P+GKYH+Q+C TTPCWLRGSD Sbjct: 68 KVYEIASFYTMFNLQPVGKYHIQICGTTPCWLRGSD 103 >UniRef50_Q0C8X0 Cluster: Putative uncharacterized protein; n=1; Aspergillus terreus NIH2624|Rep: Putative uncharacterized protein - Aspergillus terreus (strain NIH 2624) Length = 312 Score = 101 bits (243), Expect = 6e-21 Identities = 47/88 (53%), Positives = 65/88 (73%) Frame = +2 Query: 131 DSLFVHRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLP 310 DSL VHR+ P +NPSIPF+F N K ++ +L YP +K+ A++P+LDL QR + G+ Sbjct: 134 DSLSVHRNKPNNNPSIPFKFNEQNLKLIDEILKRYPPQYKKAAVMPILDLGQRQH-GFTS 192 Query: 311 ISAMHKVAEILNLPRMRVYEVATFYTMF 394 IS M++VA +L +P MRVYEVATFYTM+ Sbjct: 193 ISVMNEVARLLEMPPMRVYEVATFYTMY 220 >UniRef50_A7DLV4 Cluster: NADH-quinone oxidoreductase, E subunit; n=1; Methylobacterium extorquens PA1|Rep: NADH-quinone oxidoreductase, E subunit - Methylobacterium extorquens PA1 Length = 412 Score = 100 bits (240), Expect = 1e-20 Identities = 46/89 (51%), Positives = 57/89 (64%) Frame = +2 Query: 182 FEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMR 361 F FT N +A YPEG + A+IPLL AQ NGGWLP A+ VA+ L +P +R Sbjct: 16 FAFTPENADWARGQIAKYPEGRQASAVIPLLWKAQEQNGGWLPQKAIEAVADELGMPHIR 75 Query: 362 VYEVATFYTMFIRRPIGKYHVQVCTTTPC 448 V EVATFYTMF P+G++ +QVC T PC Sbjct: 76 VLEVATFYTMFALEPVGRFWIQVCGTVPC 104 >UniRef50_Q83BQ9 Cluster: NADH dehydrogenase I, E subunit; n=3; Coxiella burnetii|Rep: NADH dehydrogenase I, E subunit - Coxiella burnetii Length = 174 Score = 97.9 bits (233), Expect = 1e-19 Identities = 42/87 (48%), Positives = 59/87 (67%) Frame = +2 Query: 206 KRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFY 385 K ++ LA YP KR A++P L Q+ N GWL +AM+ +A+ L LPR+ VYEVATFY Sbjct: 16 KEIDRWLAKYPTDQKRSAVVPALLFVQKQNNGWLSKAAMNALADYLQLPRIWVYEVATFY 75 Query: 386 TMFIRRPIGKYHVQVCTTTPCWLRGSD 466 M+ +P+GK+ + +C PC+LRGSD Sbjct: 76 DMYNLKPMGKHKISICQNVPCFLRGSD 102 >UniRef50_A3UCV4 Cluster: ATP synthase subunit E; n=4; Alphaproteobacteria|Rep: ATP synthase subunit E - Oceanicaulis alexandrii HTCC2633 Length = 346 Score = 97.9 bits (233), Expect = 1e-19 Identities = 47/95 (49%), Positives = 63/95 (66%) Frame = +2 Query: 182 FEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMR 361 F F ++ +V+ LA YPE K A+IPLL +AQ+ + W+ AM ++A +P +R Sbjct: 14 FAFNEKSEAKVKFWLAKYPEERKASAVIPLLWIAQKQDN-WVSEPAMREIAARCGMPYIR 72 Query: 362 VYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 VYEVATFYTMF GK+ +QVC TTPCWLRG+D Sbjct: 73 VYEVATFYTMFNLEQTGKHLIQVCGTTPCWLRGAD 107 >UniRef50_Q5FGV2 Cluster: NADH-quinone oxidoreductase chain E; n=5; canis group|Rep: NADH-quinone oxidoreductase chain E - Ehrlichia ruminantium (strain Gardel) Length = 183 Score = 96.7 bits (230), Expect = 2e-19 Identities = 45/95 (47%), Positives = 62/95 (65%) Frame = +2 Query: 182 FEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMR 361 F+F + K+ L YP K A++PLL +AQ+ GG +PI+AM+ +A+ L++ + Sbjct: 18 FKFNKESLKQANDALNRYPSDRKSSAVMPLLHIAQKQCGGLIPIAAMNYIADFLDMKPIH 77 Query: 362 VYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 VYEVA FY+M+ GKY VQVC TTPCWL GSD Sbjct: 78 VYEVAKFYSMYNLSVTGKYLVQVCRTTPCWLCGSD 112 >UniRef50_Q8G1B3 Cluster: NADH dehydrogenase I, E subunit; n=9; Rhizobiales|Rep: NADH dehydrogenase I, E subunit - Brucella suis Length = 237 Score = 95.9 bits (228), Expect = 4e-19 Identities = 47/96 (48%), Positives = 64/96 (66%), Gaps = 1/96 (1%) Frame = +2 Query: 182 FEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMR 361 F F A N+ +A YPEG ++ A+IPLL AQ G W+ +++ VA +LN+P +R Sbjct: 16 FAFNAENEAWAHKTIAKYPEGRQQSAVIPLLMRAQEQEG-WVTKASIEYVAAMLNMPLIR 74 Query: 362 VYEVATFYTMFIRRPIG-KYHVQVCTTTPCWLRGSD 466 V EVATFYT F +P+G + H+QVC TTPC LRGS+ Sbjct: 75 VLEVATFYTQFQLKPVGSRAHIQVCGTTPCMLRGSE 110 >UniRef50_Q11VB6 Cluster: NADH dehydrogenase I chain E; n=2; Bacteroidetes|Rep: NADH dehydrogenase I chain E - Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) Length = 177 Score = 92.7 bits (220), Expect = 4e-18 Identities = 39/93 (41%), Positives = 62/93 (66%) Frame = +2 Query: 182 FEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMR 361 F+F+ + K+++ + A YPEG ++ A++P+L +AQ GGWLP M VA +L++ + Sbjct: 8 FQFSEASLKKIQEMKARYPEGRQKSALLPVLHMAQDELGGWLPAPLMDYVASLLDITPIE 67 Query: 362 VYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRG 460 VYEVA+FY+M+ +P+GK + C T PC L G Sbjct: 68 VYEVASFYSMYNLKPVGKCMFEFCQTGPCCLNG 100 >UniRef50_P56909 Cluster: NADH-quinone oxidoreductase subunit E 1; n=21; Rhizobiales|Rep: NADH-quinone oxidoreductase subunit E 1 - Rhizobium meliloti (Sinorhizobium meliloti) Length = 275 Score = 91.9 bits (218), Expect = 6e-18 Identities = 46/96 (47%), Positives = 64/96 (66%), Gaps = 1/96 (1%) Frame = +2 Query: 182 FEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMR 361 F F+ N EA + YPEG ++ A+IPLL AQ +G W+ +A+ VA++L + +R Sbjct: 16 FAFSKENAAWAEATIKKYPEGREQSAVIPLLMRAQEQDG-WVTRAAIESVADMLGMAYIR 74 Query: 362 VYEVATFYTMFIRRPIG-KYHVQVCTTTPCWLRGSD 466 V EVATFYT F +P+G + HVQVC TTPC LRG++ Sbjct: 75 VLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAE 110 >UniRef50_A6H1R0 Cluster: NADH dehydrogenase I, E subunit; n=2; Bacteroidetes|Rep: NADH dehydrogenase I, E subunit - Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) Length = 176 Score = 91.1 bits (216), Expect = 1e-17 Identities = 40/86 (46%), Positives = 57/86 (66%) Frame = +2 Query: 209 RVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYT 388 R+E L + YPE ++ A++P+L Q + WL I KVAEIL++ + VYEV +FYT Sbjct: 19 RIEELCSHYPEDKRKSALLPVLHEVQDAHENWLSIELQDKVAEILHIKPVEVYEVVSFYT 78 Query: 389 MFIRRPIGKYHVQVCTTTPCWLRGSD 466 M+ RRPIGKY + C T+PC L G++ Sbjct: 79 MYNRRPIGKYMFEFCQTSPCCLNGTE 104 >UniRef50_Q98KQ9 Cluster: NADH-ubiquinone dehydrogenase chain E 1; n=3; Bacteria|Rep: NADH-ubiquinone dehydrogenase chain E 1 - Rhizobium loti (Mesorhizobium loti) Length = 424 Score = 89.8 bits (213), Expect = 3e-17 Identities = 42/98 (42%), Positives = 63/98 (64%), Gaps = 1/98 (1%) Frame = +2 Query: 176 IPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPR 355 + F F N + + YP+G ++ A+IPLL LAQ G W+ +A+ ++++L +PR Sbjct: 14 VSFAFNRANAAAAKQWIKKYPKGREQSAIIPLLMLAQEQEG-WVTKAAIETISDMLGMPR 72 Query: 356 MRVYEVATFYTMFIRRPIG-KYHVQVCTTTPCWLRGSD 466 +R EVATFYT + P+G + H+QVC TTPC LRGS+ Sbjct: 73 IRGLEVATFYTQYQLNPVGTRAHIQVCGTTPCMLRGSE 110 >UniRef50_A3U1M2 Cluster: ATP synthase subunit E; n=9; Alphaproteobacteria|Rep: ATP synthase subunit E - Oceanicola batsensis HTCC2597 Length = 460 Score = 87.8 bits (208), Expect = 1e-16 Identities = 48/109 (44%), Positives = 64/109 (58%), Gaps = 1/109 (0%) Frame = +2 Query: 143 VHRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAM 322 +H+D PE F FT NQK EA + YPEG + A+IPLL AQ GWL A+ Sbjct: 5 LHKDQPES-----FAFTPENQKWAEAQMTKYPEGRQASAIIPLLWRAQEQE-GWLTRPAI 58 Query: 323 HKVAEILNLPRMRVYEVATFYTMFIRRPIGKY-HVQVCTTTPCWLRGSD 466 +A +L++ +R EVATFY MF P+G HVQ+C TT C + G++ Sbjct: 59 EHIAAMLDMAYIRALEVATFYFMFQLAPVGSVAHVQICGTTSCMICGAE 107 >UniRef50_A2F771 Cluster: Respiratory-chain NADH dehydrogenase 24 Kd subunit family protein; n=2; Trichomonas vaginalis|Rep: Respiratory-chain NADH dehydrogenase 24 Kd subunit family protein - Trichomonas vaginalis G3 Length = 201 Score = 85.4 bits (202), Expect = 6e-16 Identities = 40/94 (42%), Positives = 60/94 (63%) Frame = +2 Query: 185 EFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRV 364 +F +Q +V+A+LA YP+ +KR A IPLL L QR NGG+L + +++I+ + RV Sbjct: 24 DFKFSDQSKVDAILAKYPKENKRAATIPLLHLGQRENGGYLTTGVLQAISKIVGVTAGRV 83 Query: 365 YEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 +E A FY+MF +P + V+VC C+L GSD Sbjct: 84 HETACFYSMFRFQPPNNHIVEVCKGLSCYLTGSD 117 >UniRef50_P29914 Cluster: NADH-quinone oxidoreductase chain 2; n=22; Alphaproteobacteria|Rep: NADH-quinone oxidoreductase chain 2 - Paracoccus denitrificans Length = 239 Score = 82.6 bits (195), Expect = 4e-15 Identities = 41/96 (42%), Positives = 59/96 (61%), Gaps = 1/96 (1%) Frame = +2 Query: 182 FEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMR 361 FEFT N + A + YPEG ++ A+IP+L AQ G WL A+ A++L +P +R Sbjct: 13 FEFTPANLEWARAQMTKYPEGRQQSAIIPVLWRAQEQEG-WLSRPAIEYCADLLGMPYIR 71 Query: 362 VYEVATFYTMFIRRPIGKY-HVQVCTTTPCWLRGSD 466 EVATFY MF +P+G H+Q+C TT C + G++ Sbjct: 72 ALEVATFYFMFQLQPVGSVAHIQICGTTTCMICGAE 107 >UniRef50_P56910 Cluster: NADH-quinone oxidoreductase subunit E 2; n=3; Rhizobiaceae|Rep: NADH-quinone oxidoreductase subunit E 2 - Rhizobium meliloti (Sinorhizobium meliloti) Length = 168 Score = 78.6 bits (185), Expect = 6e-14 Identities = 38/88 (43%), Positives = 60/88 (68%) Frame = +2 Query: 203 QKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATF 382 ++ +EA A YP+ +R A++P L +AQ+ +G LP + +VA+IL + R+ VYE+ATF Sbjct: 4 REEIEAAAARYPD--RRSAIMPALMIAQKEHGH-LPGPVLEEVAQILGVERVWVYELATF 60 Query: 383 YTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 YT+F PIG++H+Q+C C L GS+ Sbjct: 61 YTLFHTEPIGRFHLQLCDNVSCMLCGSE 88 >UniRef50_Q9PGJ1 Cluster: NADH-ubiquinone oxidoreductase, NQO2 subunit; n=13; Gammaproteobacteria|Rep: NADH-ubiquinone oxidoreductase, NQO2 subunit - Xylella fastidiosa Length = 175 Score = 78.2 bits (184), Expect = 8e-14 Identities = 35/85 (41%), Positives = 52/85 (61%) Frame = +2 Query: 212 VEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTM 391 ++ LA +P KR A++ L AQ N GWL + VA+ L++P + YEVATFY+M Sbjct: 27 IDHWLAKFPADQKRSALLQGLYAAQEQNQGWLTDELIAAVAKYLDIPSVWAYEVATFYSM 86 Query: 392 FIRRPIGKYHVQVCTTTPCWLRGSD 466 F R +G+++V CT CWL G++ Sbjct: 87 FETRKVGRHNVAFCTNVSCWLNGAE 111 >UniRef50_Q0PQQ4 Cluster: NADH dehydrogenase I E subunit; n=1; Endoriftia persephone 'Hot96_1+Hot96_2'|Rep: NADH dehydrogenase I E subunit - Endoriftia persephone 'Hot96_1+Hot96_2' Length = 123 Score = 78.2 bits (184), Expect = 8e-14 Identities = 36/104 (34%), Positives = 61/104 (58%) Frame = +2 Query: 155 TPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVA 334 T E N + F++ ++ ++ +A YP ++ A++ L + Q NGGWL + M VA Sbjct: 3 TTEANNKVEL-FSSEVREEIDRWVAKYPAEWRQSAVMAALRIVQDANGGWLTTALMDDVA 61 Query: 335 EILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 L++ + VYEVATFY+M+ +P+GK+ + +CT C + SD Sbjct: 62 AYLDMAPIAVYEVATFYSMYELKPVGKHKICICTNVSCMINNSD 105 >UniRef50_Q82TU7 Cluster: Respiratory-chain NADH dehydrogenase 24 Kd subunit; n=27; Proteobacteria|Rep: Respiratory-chain NADH dehydrogenase 24 Kd subunit - Nitrosomonas europaea Length = 162 Score = 77.4 bits (182), Expect = 1e-13 Identities = 35/87 (40%), Positives = 53/87 (60%) Frame = +2 Query: 206 KRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFY 385 ++++ +A YP K+ A++ L +AQ G WL M +A+ L +P + VYEVATFY Sbjct: 12 RKIDREVAKYPADRKQSAVMSALAIAQDEKG-WLATETMDFIADYLEMPAIAVYEVATFY 70 Query: 386 TMFIRRPIGKYHVQVCTTTPCWLRGSD 466 M+ +P+GKY + VCT PC L G + Sbjct: 71 NMYNLKPVGKYKLTVCTNLPCALSGGN 97 >UniRef50_A1WXW3 Cluster: NADH-quinone oxidoreductase, E subunit; n=1; Halorhodospira halophila SL1|Rep: NADH-quinone oxidoreductase, E subunit - Halorhodospira halophila (strain DSM 244 / SL1) (Ectothiorhodospirahalophila (strain DSM 244 / SL1)) Length = 170 Score = 77.4 bits (182), Expect = 1e-13 Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Frame = +2 Query: 194 APNQKRVEALLAIYPEGH--KRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVY 367 A ++R++ LA YP+ + A+IP L + Q NGGWL S + A+ + +PR + Sbjct: 13 ADQRRRIDHWLAKYPDDEQGRASAIIPALHILQDDNGGWLERSHVAAAADYIGMPRASAF 72 Query: 368 EVATFYTMF-IRRPIGKYHVQVCTTTPCWLRGSD 466 EVATFY+MF + P+G++ V CT C L G+D Sbjct: 73 EVATFYSMFHLDEPVGRHKVNFCTNISCCLNGAD 106 >UniRef50_Q6MIR6 Cluster: NADH dehydrogenase I chain E; n=1; Bdellovibrio bacteriovorus|Rep: NADH dehydrogenase I chain E - Bdellovibrio bacteriovorus Length = 159 Score = 76.2 bits (179), Expect = 3e-13 Identities = 36/93 (38%), Positives = 57/93 (61%) Frame = +2 Query: 182 FEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMR 361 F+ + V++ LA Y K A+IP L +AQ+ N G++ + +++++++P R Sbjct: 4 FKLSDSGLAAVKSELARYEA--KESAIIPSLYIAQKENNGFITPEIIRTLSQVMDIPEAR 61 Query: 362 VYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRG 460 + EV FYTMF ++P+GKYHVQVCT C L G Sbjct: 62 INEVFKFYTMFNQKPVGKYHVQVCTNISCALEG 94 >UniRef50_A5UZH6 Cluster: NADH-quinone oxidoreductase, E subunit; n=5; Chloroflexi (class)|Rep: NADH-quinone oxidoreductase, E subunit - Roseiflexus sp. RS-1 Length = 174 Score = 75.4 bits (177), Expect = 6e-13 Identities = 37/85 (43%), Positives = 58/85 (68%) Frame = +2 Query: 212 VEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTM 391 +EA++A YP HK A++PLL +AQ G+L +AM +VAE+L++P V+EVA FY++ Sbjct: 11 IEAIIARYP--HKPSAVLPLLFIAQ-DEYGYLTEAAMREVAELLDMPPTDVFEVAGFYSL 67 Query: 392 FIRRPIGKYHVQVCTTTPCWLRGSD 466 +P+GK+ +QVC PC G++ Sbjct: 68 LYEQPVGKWVLQVCDDVPCAFCGAE 92 >UniRef50_Q02CT9 Cluster: NADH-quinone oxidoreductase, E subunit; n=1; Solibacter usitatus Ellin6076|Rep: NADH-quinone oxidoreductase, E subunit - Solibacter usitatus (strain Ellin6076) Length = 160 Score = 74.1 bits (174), Expect = 1e-12 Identities = 38/88 (43%), Positives = 52/88 (59%) Frame = +2 Query: 203 QKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATF 382 + R E LL YP G +R AMIP+L AQ G + + +VA + + ++V EV T+ Sbjct: 8 EARFEKLLTSYPPGRQRSAMIPMLMYAQ-DELGCVSDELIAEVARRIGVTPLQVNEVLTY 66 Query: 383 YTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 Y+M R+P+GKYHVQVCT C L D Sbjct: 67 YSMLHRKPLGKYHVQVCTNISCLLHDGD 94 >UniRef50_A6FCN2 Cluster: NuoE2 NADH I CHAIN E; n=1; Moritella sp. PE36|Rep: NuoE2 NADH I CHAIN E - Moritella sp. PE36 Length = 207 Score = 74.1 bits (174), Expect = 1e-12 Identities = 39/93 (41%), Positives = 61/93 (65%) Frame = +2 Query: 185 EFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRV 364 E TAP + ++ YP +R A++P L LAQ G+L +A +AEIL++P + V Sbjct: 13 ELTAP----IADIVKCYPT--QRSAIMPALYLAQ-DTYGFLDETAYRAIAEILDIPEIWV 65 Query: 365 YEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463 +E+A+FYT++ + IGKY++Q+CT PC LRG+ Sbjct: 66 FELASFYTLYKNKKIGKYNLQLCTNVPCMLRGA 98 >UniRef50_Q67P18 Cluster: NADH dehydrogenase I subunit E; n=1; Symbiobacterium thermophilum|Rep: NADH dehydrogenase I subunit E - Symbiobacterium thermophilum Length = 274 Score = 73.3 bits (172), Expect = 2e-12 Identities = 38/82 (46%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Frame = +2 Query: 212 VEALLAIYPEGHKRGAMIPLLDLAQRXNGG-WLPISAMHKVAEILNLPRMRVYEVATFYT 388 VEA+L YPEG +R A++PLL LA R G ++ S + VAEI + V V +FYT Sbjct: 18 VEAILRRYPEGRERSAILPLLHLAMREREGRYIAQSDIEAVAEICGVAPSYVQSVCSFYT 77 Query: 389 MFIRRPIGKYHVQVCTTTPCWL 454 MF R+P+GKY + VC C L Sbjct: 78 MFRRQPVGKYLITVCGNMACHL 99 >UniRef50_A7CUG1 Cluster: NADH-quinone oxidoreductase, E subunit; n=1; Opitutaceae bacterium TAV2|Rep: NADH-quinone oxidoreductase, E subunit - Opitutaceae bacterium TAV2 Length = 163 Score = 71.7 bits (168), Expect = 7e-12 Identities = 36/85 (42%), Positives = 53/85 (62%) Frame = +2 Query: 206 KRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFY 385 +R++ ++ YP KR A +PLL L Q + G++ AM +A+ L + R+ V EV TFY Sbjct: 9 QRIDEVITHYPV--KRSATLPLLHLIQE-DAGYISDEAMEWIADKLGIERIHVLEVVTFY 65 Query: 386 TMFIRRPIGKYHVQVCTTTPCWLRG 460 MF R+PIG+ H++VC T C L G Sbjct: 66 PMFRRKPIGRRHIKVCRTLSCALMG 90 >UniRef50_A4SXP9 Cluster: NADH-quinone oxidoreductase, E subunit; n=51; Burkholderiales|Rep: NADH-quinone oxidoreductase, E subunit - Polynucleobacter sp. QLW-P1DMWA-1 Length = 168 Score = 70.9 bits (166), Expect = 1e-11 Identities = 33/77 (42%), Positives = 48/77 (62%) Frame = +2 Query: 224 LAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRR 403 +A YP HK+ A++ L +A + GW+ + VA+IL +P + V EVATFY M+ + Sbjct: 19 IAKYPAEHKQSAVMACL-IAAQTEVGWVSPEVIEAVAQILEMPTIAVDEVATFYNMYNTK 77 Query: 404 PIGKYHVQVCTTTPCWL 454 PIGKY + +CT PC L Sbjct: 78 PIGKYKLVICTNLPCQL 94 >UniRef50_Q2JFL6 Cluster: NADH-quinone oxidoreductase, E subunit; n=5; Actinomycetales|Rep: NADH-quinone oxidoreductase, E subunit - Frankia sp. (strain CcI3) Length = 262 Score = 69.7 bits (163), Expect = 3e-11 Identities = 35/93 (37%), Positives = 49/93 (52%) Frame = +2 Query: 188 FTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVY 367 F+ + ++A YP G R A++PLL L Q G + + A++L + R V Sbjct: 3 FSPETHAAAQEIIARYPAGRSRSALLPLLHLVQAEQG-CVTAQGVAFCADVLGITRAEVG 61 Query: 368 EVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 VATFYTM+ R P+G Y V VCT C L G + Sbjct: 62 AVATFYTMYKRHPVGDYLVSVCTNLSCALLGGE 94 >UniRef50_Q092T1 Cluster: NADH-ubiquinone oxidoreductase 24 kDa subunit; n=2; Cystobacterineae|Rep: NADH-ubiquinone oxidoreductase 24 kDa subunit - Stigmatella aurantiaca DW4/3-1 Length = 162 Score = 69.3 bits (162), Expect = 4e-11 Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 4/97 (4%) Frame = +2 Query: 188 FTAPNQKRVEA----LLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPR 355 FT QK+ +A +L+ YP K M+P L L Q G W P + VA+ L + Sbjct: 6 FTPEEQKKFDAGISEILSHYPPDRKSAGMLPALRLLQDLKG-WCPPEGIRLVAKNLEVTP 64 Query: 356 MRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 R YEVA+FY M+ + GKY + VCT C LRG++ Sbjct: 65 ERAYEVASFYVMYHLKKPGKYTIDVCTNLSCSLRGAE 101 >UniRef50_Q6MDR2 Cluster: Putative NADH-ubiquinone oxidoreductase chain E; n=1; Candidatus Protochlamydia amoebophila UWE25|Rep: Putative NADH-ubiquinone oxidoreductase chain E - Protochlamydia amoebophila (strain UWE25) Length = 159 Score = 68.1 bits (159), Expect = 9e-11 Identities = 33/79 (41%), Positives = 47/79 (59%) Frame = +2 Query: 230 IYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPI 409 +YP +KR A+IP L LAQ G +LPI +++A + +L V + TFY MF P+ Sbjct: 4 LYP--NKRSALIPALHLAQAEKG-YLPIEVQNELAFLFDLEPSEVNSIVTFYDMFFEEPV 60 Query: 410 GKYHVQVCTTTPCWLRGSD 466 GK+ + VC C LRG+D Sbjct: 61 GKHVIHVCKNISCMLRGAD 79 >UniRef50_Q2LQE7 Cluster: NADH-quinone oxidoreductase chain F; n=1; Syntrophus aciditrophicus SB|Rep: NADH-quinone oxidoreductase chain F - Syntrophus aciditrophicus (strain SB) Length = 574 Score = 66.9 bits (156), Expect = 2e-10 Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 1/85 (1%) Frame = +2 Query: 212 VEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTM 391 + LL YPE K+ A++P L LAQ+ N L + VAE++++P + Y +AT+Y+M Sbjct: 10 IHRLLGRYPE--KQSALMPALMLAQKENANRLDQDDIRTVAELVDVPFGKAYGLATYYSM 67 Query: 392 F-IRRPIGKYHVQVCTTTPCWLRGS 463 + + +P+G+YH+QV T P L G+ Sbjct: 68 YNVEKPVGRYHLQVDTNIPATLMGA 92 >UniRef50_A3THI9 Cluster: ATP synthase subunit E; n=3; Actinomycetales|Rep: ATP synthase subunit E - Janibacter sp. HTCC2649 Length = 417 Score = 66.1 bits (154), Expect = 4e-10 Identities = 37/84 (44%), Positives = 50/84 (59%) Frame = +2 Query: 215 EALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMF 394 E ++A YP+ KR A++PLL L Q +G ++ + AE+L L R V VATFYT + Sbjct: 36 ELVVAKYPQ--KRSALLPLLHLVQSVDG-YVTGRGIDFCAEVLELSRAEVSGVATFYTQY 92 Query: 395 IRRPIGKYHVQVCTTTPCWLRGSD 466 R P G+Y V VCT T C + G D Sbjct: 93 KRHPNGEYTVGVCTNTLCAIMGGD 116 >UniRef50_A1AVR6 Cluster: NADH-quinone oxidoreductase, E subunit; n=2; sulfur-oxidizing symbionts|Rep: NADH-quinone oxidoreductase, E subunit - Ruthia magnifica subsp. Calyptogena magnifica Length = 157 Score = 65.7 bits (153), Expect = 5e-10 Identities = 30/88 (34%), Positives = 50/88 (56%) Frame = +2 Query: 203 QKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATF 382 +K+++A +A YP+ K A++ L + Q N L + VA+ L++P + V EVATF Sbjct: 7 KKQIDAWIAKYPKDRKSSAVMQTLKIIQAENENKLSADTIQAVADYLDMPDIAVQEVATF 66 Query: 383 YTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 Y + + +GKY ++ C C L G+D Sbjct: 67 YENYNHKKVGKYVIRFCHNISCMLNGAD 94 >UniRef50_Q0EZQ5 Cluster: NADH dehydrogenase I chain E; n=1; Mariprofundus ferrooxydans PV-1|Rep: NADH dehydrogenase I chain E - Mariprofundus ferrooxydans PV-1 Length = 170 Score = 64.5 bits (150), Expect = 1e-09 Identities = 34/93 (36%), Positives = 53/93 (56%) Frame = +2 Query: 188 FTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVY 367 F+ + L+ YP + A++P+L +AQ + G+L + VA++L L M+V Sbjct: 12 FSEARLAEIAELVKRYPGA--QSALMPVLYMAQE-DFGYLSMDVQQHVADVLGLRLMQVR 68 Query: 368 EVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 EV TFYTMF +P G Y ++VCT C L G++ Sbjct: 69 EVVTFYTMFREKPCGTYLLEVCTNAGCMLNGAN 101 >UniRef50_P0AFD3 Cluster: NADH-quinone oxidoreductase subunit E; n=66; Gammaproteobacteria|Rep: NADH-quinone oxidoreductase subunit E - Shigella flexneri Length = 166 Score = 64.5 bits (150), Expect = 1e-09 Identities = 30/93 (32%), Positives = 53/93 (56%) Frame = +2 Query: 182 FEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMR 361 FE +A ++ +E + Y + R A I L + Q+ G W+P A+H +A++L +P Sbjct: 12 FELSAAEREAIEHEMHHYED--PRAASIEALKIVQKQRG-WVPDGAIHAIADVLGIPASD 68 Query: 362 VYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRG 460 V VATFY+ R+P+G++ ++ C + C + G Sbjct: 69 VEGVATFYSQIFRQPVGRHVIRYCDSVVCHING 101 >UniRef50_Q0AZ71 Cluster: NADH:ubiquinone oxidoreductase 24 kD subunit-like protein precursor; n=4; Clostridiales|Rep: NADH:ubiquinone oxidoreductase 24 kD subunit-like protein precursor - Syntrophomonas wolfei subsp. wolfei (strain Goettingen) Length = 182 Score = 64.1 bits (149), Expect = 1e-09 Identities = 31/82 (37%), Positives = 48/82 (58%) Frame = +2 Query: 221 LLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIR 400 L I + H++G++I +L AQ G +LP+S + +A L + +VY +ATFYT F Sbjct: 26 LKIIEEKRHEKGSLIAILQQAQDIYG-YLPLSVLKCIARELGIKPAKVYGIATFYTQFRL 84 Query: 401 RPIGKYHVQVCTTTPCWLRGSD 466 +P GKY + C T C + GS+ Sbjct: 85 QPAGKYQIMFCQGTACHVNGSE 106 >UniRef50_A7HII1 Cluster: NADH-quinone oxidoreductase, E subunit; n=2; Anaeromyxobacter|Rep: NADH-quinone oxidoreductase, E subunit - Anaeromyxobacter sp. Fw109-5 Length = 188 Score = 63.3 bits (147), Expect = 3e-09 Identities = 36/97 (37%), Positives = 48/97 (49%) Frame = +2 Query: 176 IPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPR 355 +P E + + +L YP K AM+P L + Q G +L + A+ L Sbjct: 30 LPREKVEHFDRDLAEVLRRYPPDRKAAAMLPALRIGQEIFG-YLTPAVQRLAADRLGTSP 88 Query: 356 MRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 R EVATFY MF RPIG++ V+VCT C L G D Sbjct: 89 ARAEEVATFYVMFNTRPIGRHLVEVCTNVSCCLTGGD 125 >UniRef50_Q6A6G2 Cluster: NADH dehydrogenase I chain E; n=1; Propionibacterium acnes|Rep: NADH dehydrogenase I chain E - Propionibacterium acnes Length = 261 Score = 62.9 bits (146), Expect = 3e-09 Identities = 30/78 (38%), Positives = 47/78 (60%) Frame = +2 Query: 233 YPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIG 412 YP+ R A++P+L L Q +G P+ + AE+L + +V VATFYTM+ + P G Sbjct: 51 YPDS--RSALLPILHLVQSVDGRISPVG-IETAAEVLGITTAQVSGVATFYTMYKKHPAG 107 Query: 413 KYHVQVCTTTPCWLRGSD 466 ++H+ VCTT C + G + Sbjct: 108 QHHIGVCTTALCAVMGGE 125 >UniRef50_A7HLQ9 Cluster: NADH-quinone oxidoreductase, E subunit; n=3; Thermotogaceae|Rep: NADH-quinone oxidoreductase, E subunit - Fervidobacterium nodosum Rt17-B1 Length = 161 Score = 62.9 bits (146), Expect = 3e-09 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Frame = +2 Query: 248 KRGAMIPLLDLAQ-RXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHV 424 +R ++ LL Q ++P +AE LN+P +VYEV TFYTMF +P GKY + Sbjct: 20 ERDMLVYLLHRVQDHYQSHYIPPEVGEMIAEELNIPSSKVYEVLTFYTMFSTKPRGKYII 79 Query: 425 QVCTTTPCWLRG 460 +VCT+ PC + G Sbjct: 80 RVCTSLPCHVPG 91 >UniRef50_Q746S5 Cluster: NADH dehydrogenase I, E subunit; n=4; Desulfuromonadales|Rep: NADH dehydrogenase I, E subunit - Geobacter sulfurreducens Length = 162 Score = 61.7 bits (143), Expect = 8e-09 Identities = 29/72 (40%), Positives = 43/72 (59%) Frame = +2 Query: 251 RGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQV 430 R A + ++ QR + GWL A+ + AE+L L ++V E+ATFY M RRP+GK + V Sbjct: 21 REAAVDVMKALQR-HYGWLTDEAVGEAAELLGLTPLQVEELATFYEMIYRRPVGKRVIHV 79 Query: 431 CTTTPCWLRGSD 466 C + CW G + Sbjct: 80 CDSISCWALGGE 91 >UniRef50_Q2LYE8 Cluster: NADH:ubiquinone oxidoreductase 24 kD subunit NuoE; n=1; Syntrophus aciditrophicus SB|Rep: NADH:ubiquinone oxidoreductase 24 kD subunit NuoE - Syntrophus aciditrophicus (strain SB) Length = 173 Score = 61.7 bits (143), Expect = 8e-09 Identities = 30/84 (35%), Positives = 51/84 (60%) Frame = +2 Query: 209 RVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYT 388 ++ +++ Y +G K A+ L DL + +LP A+ V++ L +P R+YE+ATFY Sbjct: 22 KIREIISKY-DGEKSAAVAVLQDLQEEFR--YLPKEALTIVSDELQVPLSRIYEIATFYN 78 Query: 389 MFIRRPIGKYHVQVCTTTPCWLRG 460 +F +P GKY ++VC T C ++G Sbjct: 79 VFSLKPRGKYLIEVCAGTACHVQG 102 >UniRef50_A3ERJ3 Cluster: NADH ubiquinone oxidoreductase 24 kD subunit; n=2; Leptospirillum|Rep: NADH ubiquinone oxidoreductase 24 kD subunit - Leptospirillum sp. Group II UBA Length = 168 Score = 61.7 bits (143), Expect = 8e-09 Identities = 26/73 (35%), Positives = 46/73 (63%) Frame = +2 Query: 245 HKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHV 424 ++ GA++ +L Q G ++P A+ V EIL +P+ ++Y V TFY+ F + P GK+ + Sbjct: 23 NREGAVVQILQKVQEKYG-YVPADALEFVGEILEIPKSKMYGVLTFYSQFYQEPRGKFVL 81 Query: 425 QVCTTTPCWLRGS 463 ++C T C +RG+ Sbjct: 82 KICVGTACHVRGA 94 >UniRef50_Q5JIQ1 Cluster: NADH:ubiquinone oxidoreductase, subunit E; n=2; cellular organisms|Rep: NADH:ubiquinone oxidoreductase, subunit E - Pyrococcus kodakaraensis (Thermococcus kodakaraensis) Length = 154 Score = 61.7 bits (143), Expect = 8e-09 Identities = 30/69 (43%), Positives = 41/69 (59%) Frame = +2 Query: 257 AMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCT 436 ++IPLL Q G+LP + ++A L +P RVY VATFY F P+GKY V+VC Sbjct: 17 SLIPLLQRTQE-RFGYLPREVLEEIANYLGIPLSRVYGVATFYAQFRFEPLGKYVVKVCH 75 Query: 437 TTPCWLRGS 463 T C + G+ Sbjct: 76 GTACHVNGA 84 >UniRef50_Q9WXM7 Cluster: NADP-reducing hydrogenase, subunit A; n=4; Thermotogaceae|Rep: NADP-reducing hydrogenase, subunit A - Thermotoga maritima Length = 176 Score = 61.3 bits (142), Expect = 1e-08 Identities = 27/73 (36%), Positives = 46/73 (63%) Frame = +2 Query: 248 KRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQ 427 K+ A+I +L AQ G +LP + +++ L++P +VY V TFY F +P GK+ ++ Sbjct: 38 KKDALIQVLHKAQELFG-YLPADVLEYISDKLDVPLSKVYGVVTFYNFFSTKPKGKHQIK 96 Query: 428 VCTTTPCWLRGSD 466 VC T C+++G+D Sbjct: 97 VCLGTACYVKGAD 109 >UniRef50_Q8ABI7 Cluster: NADH-ubiquinone oxidoreductase subunit; n=3; Bacteroides|Rep: NADH-ubiquinone oxidoreductase subunit - Bacteroides thetaiotaomicron Length = 158 Score = 61.3 bits (142), Expect = 1e-08 Identities = 30/75 (40%), Positives = 43/75 (57%) Frame = +2 Query: 242 GHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYH 421 G+ G +I +L AQ +G +LP +A L +P +VY V TFYT F P GK+ Sbjct: 22 GNNAGELINILHEAQHLHG-YLPEEMQRIIASKLRIPVSKVYGVVTFYTFFTMTPKGKHP 80 Query: 422 VQVCTTTPCWLRGSD 466 + VC T C++RGS+ Sbjct: 81 ISVCMGTACYVRGSE 95 >UniRef50_Q3ZXM4 Cluster: Hydrogenase subunit HymA; n=13; cellular organisms|Rep: Hydrogenase subunit HymA - Dehalococcoides sp. (strain CBDB1) Length = 161 Score = 61.3 bits (142), Expect = 1e-08 Identities = 30/65 (46%), Positives = 42/65 (64%) Frame = +2 Query: 269 LLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPC 448 LL + + N WLP A++KV++ LN+P RVY VATFY +F P GK++V VC T C Sbjct: 35 LLKIQKEYN--WLPKEALYKVSQTLNVPVNRVYHVATFYKLFSVIPKGKHNVSVCVGTAC 92 Query: 449 WLRGS 463 + G+ Sbjct: 93 HVFGA 97 >UniRef50_A6PRE1 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa subunit; n=1; Victivallis vadensis ATCC BAA-548|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa subunit - Victivallis vadensis ATCC BAA-548 Length = 176 Score = 61.3 bits (142), Expect = 1e-08 Identities = 30/72 (41%), Positives = 45/72 (62%) Frame = +2 Query: 248 KRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQ 427 +RG++I +L AQ G +L VA LN+ R VY V +FY+ FI +PIG+Y + Sbjct: 41 RRGSLIQILHRAQHLFG-YLSEEVQSFVAARLNISRAEVYGVISFYSYFIDQPIGRYKIN 99 Query: 428 VCTTTPCWLRGS 463 VCT T C+++G+ Sbjct: 100 VCTGTACFVKGA 111 >UniRef50_A4J528 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa subunit; n=1; Desulfotomaculum reducens MI-1|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa subunit - Desulfotomaculum reducens MI-1 Length = 158 Score = 61.3 bits (142), Expect = 1e-08 Identities = 31/88 (35%), Positives = 53/88 (60%) Frame = +2 Query: 200 NQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVAT 379 NQ +++AL A Y +G+ G ++ + + + + G+LP + + AE L +P VY VAT Sbjct: 10 NQSKLDALFAQY-KGNPNGLIVVMAAIQE--SQGYLPKDLLVRTAEELGVPLSDVYGVAT 66 Query: 380 FYTMFIRRPIGKYHVQVCTTTPCWLRGS 463 FY F RP G++ V +C T C+++G+ Sbjct: 67 FYAAFSLRPRGRHSVNLCLGTACYVKGA 94 >UniRef50_P65574 Cluster: NADH-quinone oxidoreductase subunit E; n=23; Actinomycetales|Rep: NADH-quinone oxidoreductase subunit E - Mycobacterium bovis Length = 252 Score = 60.5 bits (140), Expect = 2e-08 Identities = 36/98 (36%), Positives = 54/98 (55%) Frame = +2 Query: 173 SIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLP 352 S P + A + + ++ YP+ +R A++PLL L Q + +L + + A+ L L Sbjct: 31 SYPPDVLARLEVDAKEIIGRYPD--RRSALLPLLHLVQGEDS-YLTPAGLRFCADQLGLT 87 Query: 353 RMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 V VA+FYTM+ RRP G+Y V VCT T C + G D Sbjct: 88 GAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGD 125 >UniRef50_Q608Y0 Cluster: NADH dehydrogenase I, E subunit; n=5; Bacteria|Rep: NADH dehydrogenase I, E subunit - Methylococcus capsulatus Length = 157 Score = 59.3 bits (137), Expect = 4e-08 Identities = 23/74 (31%), Positives = 42/74 (56%) Frame = +2 Query: 245 HKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHV 424 H A I L++ QR +G W+ + ++AE+L + + +ATFY + RRP+G+ + Sbjct: 20 HPSAAAIEALNIVQRSHG-WISDELLQEIAELLGMSPAELDSIATFYNLIYRRPVGRRVI 78 Query: 425 QVCTTTPCWLRGSD 466 C + CW+ G++ Sbjct: 79 HYCNSVSCWMLGAE 92 >UniRef50_A4J9N9 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa subunit; n=11; Bacteria|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa subunit - Desulfotomaculum reducens MI-1 Length = 177 Score = 59.3 bits (137), Expect = 4e-08 Identities = 34/96 (35%), Positives = 49/96 (51%) Frame = +2 Query: 179 PFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRM 358 P E P +K E I +GA+I +L AQ G +LP +A L +P Sbjct: 12 PVEQEFPKEKYDELESFINSLETTKGALIEILHKAQHIFG-YLPRDVQLFIARKLGIPGA 70 Query: 359 RVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 VY V +FY+ F +P GK+ + VC T C++RG+D Sbjct: 71 EVYGVVSFYSYFTTKPSGKHTISVCMGTACFVRGAD 106 >UniRef50_Q3A640 Cluster: NADH:ubiquinone oxidoreductase 24 kD subunit; n=1; Pelobacter carbinolicus DSM 2380|Rep: NADH:ubiquinone oxidoreductase 24 kD subunit - Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) Length = 159 Score = 58.4 bits (135), Expect = 7e-08 Identities = 32/94 (34%), Positives = 51/94 (54%) Frame = +2 Query: 185 EFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRV 364 EFT V+ L+ Y H G +IPLL+ Q G +LP+S ++E ++ R+ Sbjct: 6 EFTKEQIDEVDGLIDRYG-AHPSG-LIPLLEKVQELLG-YLPLSIQEYISEKTHISPNRI 62 Query: 365 YEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 Y V TFY+ F ++ VQ+C T C+++G+D Sbjct: 63 YGVVTFYSFFTMEARARHRVQLCLGTACYVKGAD 96 >UniRef50_Q1EVZ9 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa subunit; n=1; Clostridium oremlandii OhILAs|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa subunit - Clostridium oremlandii OhILAs Length = 166 Score = 58.0 bits (134), Expect = 1e-07 Identities = 31/88 (35%), Positives = 51/88 (57%) Frame = +2 Query: 200 NQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVAT 379 N ++A A+ GA+IP L Q G +LP A+ V+E L++P ++Y VA+ Sbjct: 15 NSTMLKAKEALQDIKGTEGALIPALHKIQSIYG-YLPEEALILVSEELDIPITQIYGVAS 73 Query: 380 FYTMFIRRPIGKYHVQVCTTTPCWLRGS 463 FY++F P G++ + VC T C+++GS Sbjct: 74 FYSLFSLEPKGQHVISVCLGTACYVKGS 101 >UniRef50_A0UV12 Cluster: NADH-quinone oxidoreductase, E subunit; n=8; Bacteria|Rep: NADH-quinone oxidoreductase, E subunit - Clostridium cellulolyticum H10 Length = 163 Score = 58.0 bits (134), Expect = 1e-07 Identities = 26/71 (36%), Positives = 42/71 (59%) Frame = +2 Query: 251 RGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQV 430 RGA+IP+L Q G +L + +++E LN+ +Y V TFYT F P G++ + + Sbjct: 29 RGALIPVLHEVQEVYG-YLSEDVLKEISEKLNVSLAEIYGVVTFYTQFSLNPKGRFKINI 87 Query: 431 CTTTPCWLRGS 463 C T C+++GS Sbjct: 88 CMGTACYVKGS 98 >UniRef50_O27591 Cluster: NADP-reducing hydrogenase, subunit A; n=1; Methanothermobacter thermautotrophicus str. Delta H|Rep: NADP-reducing hydrogenase, subunit A - Methanobacterium thermoautotrophicum Length = 149 Score = 58.0 bits (134), Expect = 1e-07 Identities = 30/75 (40%), Positives = 43/75 (57%) Frame = +2 Query: 242 GHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYH 421 GHK +IP+L Q G +LP A+ +VA + R +Y VATFY F +P G+ H Sbjct: 14 GHK-SEIIPILQDIQDAYG-YLPEDALEEVASFTGVSRAHLYGVATFYAQFRFKPRGRKH 71 Query: 422 VQVCTTTPCWLRGSD 466 + VCT T C + G++ Sbjct: 72 IMVCTGTACHVSGAE 86 >UniRef50_O13691 Cluster: Probable NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor; n=1; Schizosaccharomyces pombe|Rep: Probable NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor - Schizosaccharomyces pombe (Fission yeast) Length = 162 Score = 58.0 bits (134), Expect = 1e-07 Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 2/92 (2%) Frame = +2 Query: 179 PFEFTAP-NQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPR 355 P F P N + +A+LA YP + A++PLLDLAQR +G W+P +AM+++A + + Sbjct: 3 PIRFFKPENLQLAKAILARYPLRFQSAALVPLLDLAQRQHGTWIPPTAMYEIASLAGVSI 62 Query: 356 MRVYEVATFY-TMFIRRPIGKYHVQVCTTTPC 448 V+ + Y F RP K V++C + C Sbjct: 63 DYVHSLILAYPNDFFWRP-KKPRVRICNSWMC 93 >UniRef50_Q1PYY2 Cluster: Similar to nuoE subunit of the NADH:ubiquinone oxidoreductase; n=2; Candidatus Kuenenia stuttgartiensis|Rep: Similar to nuoE subunit of the NADH:ubiquinone oxidoreductase - Candidatus Kuenenia stuttgartiensis Length = 162 Score = 57.2 bits (132), Expect = 2e-07 Identities = 26/68 (38%), Positives = 44/68 (64%) Frame = +2 Query: 260 MIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTT 439 +IP+L Q G +LP++AM +V+ ++P R+Y V TFY+ F + P GK+ V++C Sbjct: 33 LIPILQEMQEEYG-YLPLTAMEEVSVRTDIPLSRIYGVVTFYSQFSQVPRGKHTVRLCAG 91 Query: 440 TPCWLRGS 463 T C ++G+ Sbjct: 92 TACHIKGA 99 >UniRef50_Q67JG1 Cluster: Putative iron hydrogenase small subunit gamma; n=3; Firmicutes|Rep: Putative iron hydrogenase small subunit gamma - Symbiobacterium thermophilum Length = 186 Score = 56.8 bits (131), Expect = 2e-07 Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Frame = +2 Query: 197 PNQKRVEALLAIYPEGHKRGA-MIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEV 373 P+ R L A +G +I +L AQ G +LP VA L++P VY V Sbjct: 12 PDDPRFAELDAFIQDGRSSADHLIAVLHKAQEIFG-FLPEEVQRHVAAALHVPPSEVYGV 70 Query: 374 ATFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463 TFY F P+GKY + VC T C+++G+ Sbjct: 71 VTFYNYFTLTPVGKYPINVCMGTACYVQGA 100 >UniRef50_A5FSK9 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa subunit; n=3; Dehalococcoides|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa subunit - Dehalococcoides sp. BAV1 Length = 155 Score = 56.4 bits (130), Expect = 3e-07 Identities = 24/79 (30%), Positives = 47/79 (59%) Frame = +2 Query: 230 IYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPI 409 I G R +++P L+ Q G++P A++ + E L++P + +Y + TFY++ Sbjct: 13 ITQSGSSRLSLLPCLEAVQE-ECGYIPHEAVNYLRECLSIPSIDIYGMITFYSLLSTNQK 71 Query: 410 GKYHVQVCTTTPCWLRGSD 466 GKY +++C + PC+L G++ Sbjct: 72 GKYVIRLCNSLPCYLNGTE 90 >UniRef50_Q9S5X7 Cluster: Fe-hydrogenase, subunit gamma; n=5; Thermotogaceae|Rep: Fe-hydrogenase, subunit gamma - Thermotoga maritima Length = 164 Score = 56.0 bits (129), Expect = 4e-07 Identities = 31/86 (36%), Positives = 48/86 (55%) Frame = +2 Query: 206 KRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFY 385 ++VE +L Y G+KR +I +L Q +LP ++ V+ + +P ++Y VATFY Sbjct: 9 EKVEEILKKY--GYKRENLIKILLEIQEIYR-YLPEDVINYVSTAMGIPPAKIYGVATFY 65 Query: 386 TMFIRRPIGKYHVQVCTTTPCWLRGS 463 F +P GKY + VC T C + GS Sbjct: 66 AQFSLKPKGKYTIMVCDGTACHMAGS 91 >UniRef50_Q1NQY7 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa subunit; n=5; Bacteria|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa subunit - delta proteobacterium MLMS-1 Length = 200 Score = 56.0 bits (129), Expect = 4e-07 Identities = 31/91 (34%), Positives = 50/91 (54%) Frame = +2 Query: 191 TAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYE 370 T P + VE A+ G++ G +I L Q+ + G++ AM ++A L LP +VY Sbjct: 16 TEPRWRPVET--AMRRNGYQAGGLIEALHAVQQ-SYGYIDEEAMGRLATALTLPLSKVYG 72 Query: 371 VATFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463 V TFY F +P G++ VC T C+++G+ Sbjct: 73 VVTFYHFFHLKPKGRHSCVVCLGTACYIKGA 103 >UniRef50_A5FS13 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa subunit; n=3; Dehalococcoides|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa subunit - Dehalococcoides sp. BAV1 Length = 154 Score = 56.0 bits (129), Expect = 4e-07 Identities = 32/90 (35%), Positives = 48/90 (53%) Frame = +2 Query: 197 PNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVA 376 P K +L++Y K+ +IP+L LA + N +L M KVA + +P VY +A Sbjct: 4 PVNKTYTPVLSLYEA--KKENLIPIL-LAFQRNFSYLSRDMMQKVAAYVGVPESSVYNIA 60 Query: 377 TFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 TFY+ F P G + V VC T C + G++ Sbjct: 61 TFYSQFRLEPPGIHRVHVCRGTACHVMGAE 90 >UniRef50_Q7NZH7 Cluster: NADH-ubiquinone oxidoreductase, chain E; n=8; Betaproteobacteria|Rep: NADH-ubiquinone oxidoreductase, chain E - Chromobacterium violaceum Length = 166 Score = 55.6 bits (128), Expect = 5e-07 Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 8/91 (8%) Frame = +2 Query: 212 VEALLAIYPEGHKRGAMIPLLDLA--QRXNGGWLPISA------MHKVAEILNLPRMRVY 367 ++ +A YP KR A++ L +A +R G P + + VA L + + Y Sbjct: 10 IDREVAKYPADQKRSAVMGALRIALDERRAAGETPEARCLNPELIEFVANYLGIAPVAAY 69 Query: 368 EVATFYTMFIRRPIGKYHVQVCTTTPCWLRG 460 EVATFY M+ +P+GK+ + VCT PC L G Sbjct: 70 EVATFYNMYDMKPVGKFKITVCTNLPCALSG 100 >UniRef50_Q1PWG7 Cluster: Similar to to proton-translocating NADH dehydrogenase I, 24 kDa subunit; n=1; Candidatus Kuenenia stuttgartiensis|Rep: Similar to to proton-translocating NADH dehydrogenase I, 24 kDa subunit - Candidatus Kuenenia stuttgartiensis Length = 164 Score = 55.6 bits (128), Expect = 5e-07 Identities = 27/73 (36%), Positives = 43/73 (58%) Frame = +2 Query: 245 HKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHV 424 H RG++IP+L Q G +LP + V+E LN+ + VATFY F RP G++ + Sbjct: 28 HGRGSLIPILQTIQTAYG-YLPEKVVDFVSERLNISVNEIIGVATFYAQFHMRPRGRHII 86 Query: 425 QVCTTTPCWLRGS 463 + C+ T C ++G+ Sbjct: 87 KACSGTACHVKGA 99 >UniRef50_A1HP41 Cluster: NADH-quinone oxidoreductase, E subunit; n=9; Bacteria|Rep: NADH-quinone oxidoreductase, E subunit - Thermosinus carboxydivorans Nor1 Length = 166 Score = 55.6 bits (128), Expect = 5e-07 Identities = 32/85 (37%), Positives = 51/85 (60%) Frame = +2 Query: 209 RVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYT 388 +++ +LA Y +G K GA+IP+L AQ G +L + +AE L++P ++Y V TFY Sbjct: 21 QLDEILAKY-QGVK-GALIPVLQEAQNAYG-YLSKEVIEYIAEKLDIPVSQIYGVVTFYA 77 Query: 389 MFIRRPIGKYHVQVCTTTPCWLRGS 463 F P G+ ++VC T C +RG+ Sbjct: 78 QFHLNPRGRNIIRVCQGTACHVRGA 102 >UniRef50_Q8YYU5 Cluster: NADH dehydrogenase I chain E; n=4; Bacteria|Rep: NADH dehydrogenase I chain E - Anabaena sp. (strain PCC 7120) Length = 164 Score = 54.8 bits (126), Expect = 9e-07 Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Frame = +2 Query: 206 KRVEAL-LAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATF 382 KR++ L AI +++ A+I +L AQ G +L + +A L LP RVY VATF Sbjct: 15 KRLKMLDAAIKRHQYQQDALIEILHKAQELFG-YLENDLLLYIAHSLKLPPSRVYGVATF 73 Query: 383 YTMFIRRPIGKYHVQVCTTTPCWLRGS 463 Y +F P G + VCT T C+++GS Sbjct: 74 YHLFSLAPQGVHSCVVCTGTACYVKGS 100 >UniRef50_Q1PW48 Cluster: Similar to NADH:ubiquinone oxidoreductase 24 kDa subunit, mitochondrial; n=1; Candidatus Kuenenia stuttgartiensis|Rep: Similar to NADH:ubiquinone oxidoreductase 24 kDa subunit, mitochondrial - Candidatus Kuenenia stuttgartiensis Length = 152 Score = 54.4 bits (125), Expect = 1e-06 Identities = 30/89 (33%), Positives = 48/89 (53%) Frame = +2 Query: 200 NQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVAT 379 +Q V+ L I G+ + A IP+L Q G +LP+ + +V E + + +Y VAT Sbjct: 2 SQSNVKKYLEIC--GNTKEASIPILQSIQEEYG-YLPLDVLDQVCEESEITKSHLYGVAT 58 Query: 380 FYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 FY F P G+ ++VC T C ++G+D Sbjct: 59 FYAQFKLTPKGRNAIKVCKGTACHVKGAD 87 >UniRef50_A5D2H5 Cluster: NADH:ubiquinone oxidoreductase 24 kD subunit; n=1; Pelotomaculum thermopropionicum SI|Rep: NADH:ubiquinone oxidoreductase 24 kD subunit - Pelotomaculum thermopropionicum SI Length = 192 Score = 54.4 bits (125), Expect = 1e-06 Identities = 28/71 (39%), Positives = 41/71 (57%) Frame = +2 Query: 251 RGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQV 430 +G +I +L AQ G +LP +AE L +P V V TFY++F RP GKY + V Sbjct: 49 KGQLIRILQKAQDIFG-YLPDDVQAFIAERLRVPVAEVNGVVTFYSLFSTRPKGKYIINV 107 Query: 431 CTTTPCWLRGS 463 C T C+++G+ Sbjct: 108 CMGTACYVKGA 118 >UniRef50_Q9RU91 Cluster: NADH dehydrogenase I, E subunit; n=2; Deinococcus|Rep: NADH dehydrogenase I, E subunit - Deinococcus radiodurans Length = 207 Score = 54.0 bits (124), Expect = 2e-06 Identities = 28/77 (36%), Positives = 44/77 (57%) Frame = +2 Query: 236 PEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGK 415 P+G +R A++PLL Q G ++ + ++AE+ V V +FY+ + P G+ Sbjct: 22 PQG-RRSALMPLLREVQDAEG-FVAAPRLAEIAELCGTTATEVRSVMSFYSTYHTVPTGR 79 Query: 416 YHVQVCTTTPCWLRGSD 466 YH+QVC+T C L GSD Sbjct: 80 YHLQVCSTLMCALAGSD 96 >UniRef50_Q8RBD2 Cluster: NADH:ubiquinone oxidoreductase 24 kD subunit; n=3; Thermoanaerobacter|Rep: NADH:ubiquinone oxidoreductase 24 kD subunit - Thermoanaerobacter tengcongensis Length = 169 Score = 54.0 bits (124), Expect = 2e-06 Identities = 22/70 (31%), Positives = 44/70 (62%) Frame = +2 Query: 254 GAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVC 433 G++I +++ AQ G +LPI +++ + +P ++ ++TFY+ F +P GKY + +C Sbjct: 37 GSLIAVMNDAQEIFG-YLPIEVQLFISQEMKVPLTEIFGISTFYSRFTLKPSGKYKINLC 95 Query: 434 TTTPCWLRGS 463 T C++RG+ Sbjct: 96 MGTACYVRGA 105 >UniRef50_Q6FE68 Cluster: NADH dehydrogenase I chain E; n=5; Moraxellaceae|Rep: NADH dehydrogenase I chain E - Acinetobacter sp. (strain ADP1) Length = 170 Score = 54.0 bits (124), Expect = 2e-06 Identities = 28/92 (30%), Positives = 51/92 (55%) Frame = +2 Query: 191 TAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYE 370 TA +E + YP + R A + L QR NG W+ + M+ +A++L++ + Sbjct: 19 TADEIHEIEHHIHHYP--YPRAASLDALKCVQRRNG-WVDDAQMNAIAQMLSISVADLEG 75 Query: 371 VATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 VATFY R+P+G++ + +C + C+L G++ Sbjct: 76 VATFYNRIYRQPVGRHVILLCDSIACFLMGAE 107 >UniRef50_Q0AWA4 Cluster: NADH:ubiquinone oxidoreductase 24 kD subunit NuoE precursor; n=1; Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep: NADH:ubiquinone oxidoreductase 24 kD subunit NuoE precursor - Syntrophomonas wolfei subsp. wolfei (strain Goettingen) Length = 166 Score = 53.6 bits (123), Expect = 2e-06 Identities = 22/55 (40%), Positives = 37/55 (67%) Frame = +2 Query: 302 WLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 +LP SA+ AE + +P +VY +ATFY F +P G+++++VC T C ++GS+ Sbjct: 40 YLPRSALELTAEYVGVPFSQVYSMATFYRAFSLQPRGRFNIKVCDGTTCHIKGSN 94 >UniRef50_Q89AU3 Cluster: NADH-quinone oxidoreductase subunit E; n=1; Buchnera aphidicola (Baizongia pistaciae)|Rep: NADH-quinone oxidoreductase subunit E - Buchnera aphidicola subsp. Baizongia pistaciae Length = 171 Score = 53.6 bits (123), Expect = 2e-06 Identities = 27/102 (26%), Positives = 54/102 (52%) Frame = +2 Query: 161 EDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEI 340 E + I +F Q+++E I R ++I +L Q+ + GW+ + ++A I Sbjct: 8 EMSKKIDIKFKLTIQEKIEIFNIIKNYRTVRSSLIEILKFVQK-SYGWISNELITELACI 66 Query: 341 LNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 L + + + E+ATFY+ R+PIG+ ++ C + C++ G + Sbjct: 67 LKISKCDIEEIATFYSQIFRQPIGRNIIKYCDSVVCYVNGCE 108 >UniRef50_Q1IS36 Cluster: NADH-quinone oxidoreductase, E subunit; n=1; Acidobacteria bacterium Ellin345|Rep: NADH-quinone oxidoreductase, E subunit - Acidobacteria bacterium (strain Ellin345) Length = 160 Score = 53.2 bits (122), Expect = 3e-06 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 3/79 (3%) Frame = +2 Query: 239 EGH---KRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPI 409 +GH KR ++P L L + G+L A+ ++A + L + V V ++Y+M +PI Sbjct: 15 QGHYPTKRSPLVPFL-LYVQDEVGYLSDEAIVEIANRVELTPLEVRNVISYYSMLRTKPI 73 Query: 410 GKYHVQVCTTTPCWLRGSD 466 GKY+VQVCT C RG + Sbjct: 74 GKYNVQVCTNICCLQRGGE 92 >UniRef50_Q01WJ0 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa subunit; n=2; Bacteria|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa subunit - Solibacter usitatus (strain Ellin6076) Length = 170 Score = 52.8 bits (121), Expect = 4e-06 Identities = 27/74 (36%), Positives = 41/74 (55%) Frame = +2 Query: 242 GHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYH 421 G + A+I L Q G +L + + VA +L +P RVY ATFY F +P G++ Sbjct: 28 GREPHALIETLHTVQECFG-YLDEAGLRFVASVLRVPLSRVYGAATFYHFFTLKPKGRHT 86 Query: 422 VQVCTTTPCWLRGS 463 VCT T C+++G+ Sbjct: 87 CVVCTGTACYIKGA 100 >UniRef50_A0UVM6 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa subunit; n=1; Clostridium cellulolyticum H10|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa subunit - Clostridium cellulolyticum H10 Length = 163 Score = 52.8 bits (121), Expect = 4e-06 Identities = 26/65 (40%), Positives = 38/65 (58%) Frame = +2 Query: 269 LLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPC 448 +L+L LP + VAE L++P +VY V TFY+MF P G+Y V+VC + PC Sbjct: 29 MLELQSMSGTNSLPHEWVVFVAEALDMPVSKVYSVITFYSMFGTEPRGRYLVEVCKSGPC 88 Query: 449 WLRGS 463 + G+ Sbjct: 89 HVSGA 93 >UniRef50_Q2FP98 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa subunit; n=1; Methanospirillum hungatei JF-1|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa subunit - Methanospirillum hungatei (strain JF-1 / DSM 864) Length = 160 Score = 52.8 bits (121), Expect = 4e-06 Identities = 25/89 (28%), Positives = 52/89 (58%) Frame = +2 Query: 200 NQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVAT 379 ++KR++ ++ YP + G + +L Q +P+ + V+E L+LP ++ + T Sbjct: 2 DEKRLDEIIEKYP--YPAGRTLGVLREIQ-IQERHIPMDTLKLVSEKLDLPLSELFALVT 58 Query: 380 FYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 FY+ F +P+G++ + VC TPC ++G++ Sbjct: 59 FYSFFSLKPVGEHLITVCMGTPCHVKGAE 87 >UniRef50_A5V6C3 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa subunit; n=2; Sphingomonadaceae|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa subunit - Sphingomonas wittichii RW1 Length = 159 Score = 52.4 bits (120), Expect = 5e-06 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 3/93 (3%) Frame = +2 Query: 191 TAPNQKRVEALLA--IYPEGHKRGAMIPLL-DLAQRXNGGWLPISAMHKVAEILNLPRMR 361 T ++ VEA++A + +G +RGA++PLL DL + G++ + VA +NL R Sbjct: 2 TMERREPVEAMVARLLAAQGERRGALLPLLHDLQEEL--GFVGEETVAAVAAAMNLSRAE 59 Query: 362 VYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRG 460 V+ V +FY F + P G++ V+ C C RG Sbjct: 60 VHGVVSFYHDFRKAPAGRHVVKYCRAESCRSRG 92 >UniRef50_Q3A461 Cluster: NADP-reducing hydrogenase chain A; n=5; Deltaproteobacteria|Rep: NADP-reducing hydrogenase chain A - Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) Length = 173 Score = 52.0 bits (119), Expect = 6e-06 Identities = 26/73 (35%), Positives = 41/73 (56%) Frame = +2 Query: 248 KRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQ 427 K G ++ +L AQ G +LP VA+ + + +VY V +FYT F P GK+ + Sbjct: 39 KEGHLVTVLHKAQSLFG-YLPKEVQEFVADHMEVSLAQVYGVVSFYTFFTMIPKGKHPIS 97 Query: 428 VCTTTPCWLRGSD 466 VC T C+++G+D Sbjct: 98 VCMGTACFVKGAD 110 >UniRef50_A0LJN9 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa subunit; n=3; Deltaproteobacteria|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa subunit - Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) Length = 163 Score = 52.0 bits (119), Expect = 6e-06 Identities = 20/54 (37%), Positives = 32/54 (59%) Frame = +2 Query: 299 GWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRG 460 G++ AM + A IL + + + E+ATFY R P+G+Y + VC + CW+ G Sbjct: 36 GYMTDEAMEEAAGILGMTTLELEELATFYDHIYRSPVGRYVIHVCDSAVCWMEG 89 >UniRef50_Q2RHR8 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa subunit; n=1; Moorella thermoacetica ATCC 39073|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa subunit - Moorella thermoacetica (strain ATCC 39073) Length = 157 Score = 51.6 bits (118), Expect = 8e-06 Identities = 26/69 (37%), Positives = 40/69 (57%) Frame = +2 Query: 257 AMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCT 436 A+I +L +Q G +LP + +A+ L L +VY V +FY F +P GKY V VC Sbjct: 26 ALIEVLHQSQELVG-YLPRNVQVAIADGLGLSLSQVYSVVSFYNHFTTKPKGKYQVSVCM 84 Query: 437 TTPCWLRGS 463 T C+++G+ Sbjct: 85 GTACFVKGA 93 >UniRef50_Q2AG84 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa subunit; n=5; Bacteria|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa subunit - Halothermothrix orenii H 168 Length = 167 Score = 51.6 bits (118), Expect = 8e-06 Identities = 28/78 (35%), Positives = 40/78 (51%) Frame = +2 Query: 230 IYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPI 409 I G + +IP+L Q+ +LP + +A +++L VY VATFY F P Sbjct: 18 IEKHGKDQSKLIPILQEVQKEYR-YLPEEILTYIATVMDLSPATVYGVATFYAQFSLDPK 76 Query: 410 GKYHVQVCTTTPCWLRGS 463 GKY + VC T C + GS Sbjct: 77 GKYVINVCDGTACHVSGS 94 >UniRef50_Q4AMU5 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa subunit; n=1; Chlorobium phaeobacteroides BS1|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa subunit - Chlorobium phaeobacteroides BS1 Length = 195 Score = 51.2 bits (117), Expect = 1e-05 Identities = 26/75 (34%), Positives = 41/75 (54%) Frame = +2 Query: 242 GHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYH 421 G A +PLL Q G +LP AM + ++ ++Y VATFY+ F P+G++ Sbjct: 23 GKSVSAAVPLLQAVQNEYG-YLPREAMDIIVAETDVGASQLYGVATFYSQFRLDPVGRHV 81 Query: 422 VQVCTTTPCWLRGSD 466 ++VC T C + G+D Sbjct: 82 IKVCHGTACHVSGAD 96 >UniRef50_Q0PIE2 Cluster: NAD(P)H-quinone oxidoreductase 24 kDa subunit; n=1; Heliobacillus mobilis|Rep: NAD(P)H-quinone oxidoreductase 24 kDa subunit - Heliobacillus mobilis Length = 171 Score = 51.2 bits (117), Expect = 1e-05 Identities = 26/81 (32%), Positives = 45/81 (55%) Frame = +2 Query: 221 LLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIR 400 +L YP+ +R + L D+ + ++P +M +A+ L LP ++Y +ATFY Sbjct: 15 ILEGYPK-EQRYTLAMLQDIQKEFQ--FIPRESMELIADYLELPLSKIYSLATFYKALSL 71 Query: 401 RPIGKYHVQVCTTTPCWLRGS 463 RP GK+ +++C T C +R S Sbjct: 72 RPKGKHVIKICDGTACHIRSS 92 >UniRef50_A0LLS9 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa subunit; n=1; Syntrophobacter fumaroxidans MPOB|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa subunit - Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) Length = 151 Score = 50.8 bits (116), Expect = 1e-05 Identities = 28/71 (39%), Positives = 37/71 (52%) Frame = +2 Query: 248 KRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQ 427 KR A+IP+L Q G+LP AM A + VY V+TFY F P+G++ V Sbjct: 15 KRDALIPVLQDIQ-GEFGYLPPHAMQAAARHCRTSAVEVYGVSTFYAQFKFSPVGRHTVT 73 Query: 428 VCTTTPCWLRG 460 VC T C + G Sbjct: 74 VCQGTACHVMG 84 >UniRef50_A7IL17 Cluster: NADH dehydrogenase (Ubiquinone) 24 kDa subunit; n=3; Alphaproteobacteria|Rep: NADH dehydrogenase (Ubiquinone) 24 kDa subunit - Xanthobacter sp. (strain Py2) Length = 176 Score = 50.4 bits (115), Expect = 2e-05 Identities = 27/68 (39%), Positives = 37/68 (54%) Frame = +2 Query: 245 HKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHV 424 H GA +P+L Q G++P A+ +AE LNL R VY V TFY F R G++ V Sbjct: 33 HLEGATMPILHALQE-TFGFVPDPAVPMIAESLNLSRAEVYGVLTFYHDFRREAPGRHVV 91 Query: 425 QVCTTTPC 448 ++C C Sbjct: 92 KLCAAEAC 99 >UniRef50_A5UZ48 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa subunit; n=10; Bacteria|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa subunit - Roseiflexus sp. RS-1 Length = 178 Score = 50.4 bits (115), Expect = 2e-05 Identities = 28/73 (38%), Positives = 41/73 (56%) Frame = +2 Query: 245 HKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHV 424 ++ A+I +L AQ G +L + +A L+LP RVY VATFY F P G++ Sbjct: 35 YRPDALIEVLHRAQELFG-YLSTDLLLFIANSLHLPPSRVYGVATFYHFFSLAPKGEHSC 93 Query: 425 QVCTTTPCWLRGS 463 VC T C++RG+ Sbjct: 94 VVCLGTACYVRGA 106 >UniRef50_A1ALP3 Cluster: NADH-quinone oxidoreductase, E subunit; n=1; Pelobacter propionicus DSM 2379|Rep: NADH-quinone oxidoreductase, E subunit - Pelobacter propionicus (strain DSM 2379) Length = 154 Score = 50.4 bits (115), Expect = 2e-05 Identities = 27/88 (30%), Positives = 44/88 (50%) Frame = +2 Query: 203 QKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATF 382 +++ L A YP+ ++P L + A+ +A L LP M+V E T+ Sbjct: 5 EEKFAQLRATYPKELNSSLVMPFLRIMLDEKKSLGESDAVF-IANYLGLPAMQVKEALTW 63 Query: 383 YTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 YTMF R P+G + ++VC C L G++ Sbjct: 64 YTMFYRHPVGTHVIKVCRNIACSLMGAE 91 >UniRef50_Q4AHT8 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa subunit; n=1; Chlorobium phaeobacteroides BS1|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa subunit - Chlorobium phaeobacteroides BS1 Length = 172 Score = 50.0 bits (114), Expect = 3e-05 Identities = 26/72 (36%), Positives = 41/72 (56%) Frame = +2 Query: 248 KRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQ 427 K+G +IP+L Q G ++P A K+ E + L +Y VATFY F P+GK+ ++ Sbjct: 33 KKGNLIPVLQGVQSIFG-YVPREAFIKLNEEMGLQLSDMYGVATFYAQFRLNPVGKHIIK 91 Query: 428 VCTTTPCWLRGS 463 VC T C ++ + Sbjct: 92 VCHGTACHVQSA 103 >UniRef50_O66842 Cluster: NADH-quinone oxidoreductase subunit E; n=2; Aquifex aeolicus|Rep: NADH-quinone oxidoreductase subunit E - Aquifex aeolicus Length = 160 Score = 50.0 bits (114), Expect = 3e-05 Identities = 29/95 (30%), Positives = 50/95 (52%) Frame = +2 Query: 182 FEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMR 361 FEF + +++ + +P+ KR A++ L Q G ++P ++ +A++L LP Sbjct: 6 FEFPEELKTKLQEHINYFPK--KRQAILLCLHEIQNYYG-YIPPESLKPLADMLELPLNH 62 Query: 362 VYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 V V FY MF R KY ++VC + C L G++ Sbjct: 63 VEGVVAFYDMFDREDKAKYRIRVCVSIVCHLMGTN 97 >UniRef50_Q749M0 Cluster: NAD-reducing hydrogenase, putative; n=4; Bacteria|Rep: NAD-reducing hydrogenase, putative - Geobacter sulfurreducens Length = 191 Score = 49.2 bits (112), Expect = 4e-05 Identities = 33/89 (37%), Positives = 45/89 (50%) Frame = +2 Query: 197 PNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVA 376 P K VE L Y ++ A++ +L +AQ G L M VA L +P RVY VA Sbjct: 20 PRFKVVERTLKQYQ--YRADALLEVLHVAQE-TFGCLSDELMTHVARQLRVPPSRVYGVA 76 Query: 377 TFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463 TFY F G++ VCT T C+++ S Sbjct: 77 TFYHFFTLEARGEHSCVVCTGTACYVKRS 105 >UniRef50_Q2C5T5 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa subunit; n=2; Vibrionaceae|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa subunit - Photobacterium sp. SKA34 Length = 188 Score = 49.2 bits (112), Expect = 4e-05 Identities = 29/91 (31%), Positives = 50/91 (54%) Frame = +2 Query: 191 TAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYE 370 T + +E +A YPE KR I L Q G++ +++ V+E+ +L ++ E Sbjct: 3 TDQERAHLEEHIAHYPE--KRAGAIYCLYFMQ-DKYGYITKPSLNLVSELTDLSTTQLDE 59 Query: 371 VATFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463 + TFYT+ RRP+G+ ++VC + C RG+ Sbjct: 60 LITFYTLLRRRPVGRNIMRVCDSISCHTRGA 90 >UniRef50_Q98BW7 Cluster: NAD-dependent formate dehydrogenase gamma subunit; n=15; Proteobacteria|Rep: NAD-dependent formate dehydrogenase gamma subunit - Rhizobium loti (Mesorhizobium loti) Length = 159 Score = 48.8 bits (111), Expect = 6e-05 Identities = 26/71 (36%), Positives = 40/71 (56%) Frame = +2 Query: 254 GAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVC 433 G ++P+L Q G +P +A+ +A+ LNL R V+ V TFY F RP G++ +++C Sbjct: 26 GPLLPILHEIQ-DEFGHVPQAALPVIADGLNLSRAEVHGVVTFYHDFRARPAGRHVLKLC 84 Query: 434 TTTPCWLRGSD 466 C GSD Sbjct: 85 QAEACQSMGSD 95 >UniRef50_Q835I9 Cluster: NAD-dependent formate dehydrogenase, gamma subunit, putative; n=1; Enterococcus faecalis|Rep: NAD-dependent formate dehydrogenase, gamma subunit, putative - Enterococcus faecalis (Streptococcus faecalis) Length = 162 Score = 48.4 bits (110), Expect = 8e-05 Identities = 22/64 (34%), Positives = 34/64 (53%) Frame = +2 Query: 269 LLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPC 448 L++L G++ VAE L+L RVYE+ +FY + P KY +++C +TPC Sbjct: 27 LIELQFASEEGYIDQETAQLVAEHLHLTEARVYEIVSFYAILKTEPQAKYVLKICNSTPC 86 Query: 449 WLRG 460 G Sbjct: 87 HYTG 90 >UniRef50_Q2LS97 Cluster: NADH-quinone oxidoreductase chain F; n=2; Syntrophus aciditrophicus SB|Rep: NADH-quinone oxidoreductase chain F - Syntrophus aciditrophicus (strain SB) Length = 638 Score = 48.4 bits (110), Expect = 8e-05 Identities = 25/68 (36%), Positives = 35/68 (51%) Frame = +2 Query: 260 MIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTT 439 M L DL L ++ VAE +NLP+ V FYTMF RP K+ ++VC + Sbjct: 52 MAILRDLENLSGNQQLSPETLNAVAEAMNLPQSTVAGFVGFYTMFSTRPRAKFLIRVCKS 111 Query: 440 TPCWLRGS 463 PC + G+ Sbjct: 112 GPCHVMGA 119 >UniRef50_Q6SGN4 Cluster: NADH-quinone oxidoreductase, E subunit; n=1; uncultured bacterium 463|Rep: NADH-quinone oxidoreductase, E subunit - uncultured bacterium 463 Length = 167 Score = 48.4 bits (110), Expect = 8e-05 Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 1/93 (1%) Frame = +2 Query: 191 TAPNQKRVEALLAIYPEGHKRGAM-IPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVY 367 +A +Q+ ++A+ A R A+ I L + Q G W+ ++ +A L++ + Sbjct: 11 SALSQEELQAIDAEIAHVPYRDAVAIDALKIVQAHRG-WVSDESLSAIAAHLHMSADELD 69 Query: 368 EVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 +ATFY + RRP+G + +C + CW++G D Sbjct: 70 GIATFYNLIYRRPVGDKVILLCNSISCWIKGCD 102 >UniRef50_Q89QJ0 Cluster: NADH dehydrogenase I chain E; n=16; Alphaproteobacteria|Rep: NADH dehydrogenase I chain E - Bradyrhizobium japonicum Length = 162 Score = 47.6 bits (108), Expect = 1e-04 Identities = 26/79 (32%), Positives = 41/79 (51%) Frame = +2 Query: 230 IYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPI 409 I + GA + +L Q G ++P +A+ VA+ LNL R V+ V TFY F +P Sbjct: 21 IAEHARQEGATLVILHALQAAFG-YVPEAAIPMVAQALNLSRAEVHGVFTFYHDFRHKPA 79 Query: 410 GKYHVQVCTTTPCWLRGSD 466 G++ +++C C G D Sbjct: 80 GRHVLKLCRAEACQAAGGD 98 >UniRef50_A3JB74 Cluster: ATP synthase subunit E; n=1; Marinobacter sp. ELB17|Rep: ATP synthase subunit E - Marinobacter sp. ELB17 Length = 178 Score = 47.6 bits (108), Expect = 1e-04 Identities = 25/72 (34%), Positives = 38/72 (52%) Frame = +2 Query: 245 HKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHV 424 HK GA++P+L Q G++P A+ +AE+L R ++ V +FY F P G + Sbjct: 36 HKPGALLPILHAIQ-DRVGYVPEDAVPIIAEMLQQTRADIHGVISFYHHFRTHPSGSNLL 94 Query: 425 QVCTTTPCWLRG 460 +VC C RG Sbjct: 95 EVCRAEACQARG 106 >UniRef50_A0QNT7 Cluster: Formate dehydrogenase, gamma subunit; n=1; Mycobacterium smegmatis str. MC2 155|Rep: Formate dehydrogenase, gamma subunit - Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) Length = 161 Score = 47.6 bits (108), Expect = 1e-04 Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 2/93 (2%) Frame = +2 Query: 191 TAPNQKRVEALLAIYPEGHK--RGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRV 364 T + V L+ H+ RG ++P+L Q G +P A+ +AE LNL R V Sbjct: 4 TTTGETSVATLVREIAADHRDHRGPLLPILHAVQERLG-CVPAEAVPVLAEELNLSRADV 62 Query: 365 YEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463 + V TFY F P G+ V+VC C G+ Sbjct: 63 HGVITFYHDFRSEPAGRTTVRVCRAEACQALGA 95 >UniRef50_Q6N1Z1 Cluster: NADH-ubiquinone dehydrogenase chain E; n=8; Alphaproteobacteria|Rep: NADH-ubiquinone dehydrogenase chain E - Rhodopseudomonas palustris Length = 162 Score = 47.2 bits (107), Expect = 2e-04 Identities = 22/75 (29%), Positives = 38/75 (50%) Frame = +2 Query: 242 GHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYH 421 G + AM+ L L Q G W+ + + + A++L + + +ATFY+ R P+G Sbjct: 19 GGAKAAMVEALKLVQEAEG-WVSDAHLKEAADVLGVTPAEIDALATFYSQIFRSPVGDTV 77 Query: 422 VQVCTTTPCWLRGSD 466 + +C C+L G D Sbjct: 78 ILLCDGLSCYLCGGD 92 >UniRef50_A0LGJ1 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa subunit; n=2; Bacteria|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa subunit - Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) Length = 162 Score = 47.2 bits (107), Expect = 2e-04 Identities = 27/78 (34%), Positives = 41/78 (52%) Frame = +2 Query: 230 IYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPI 409 I P + ++I +L AQ G +LP +VAE L L +Y V TFY F P Sbjct: 21 IEPYRGQPNSLIQVLAKAQEYIG-YLPKWVQVQVAEGLGLSLQEIYGVTTFYAFFSLIPR 79 Query: 410 GKYHVQVCTTTPCWLRGS 463 G++ + VC T C+++G+ Sbjct: 80 GRHKLSVCAGTACYVKGT 97 >UniRef50_Q74GA4 Cluster: NADH dehydrogenase I, E subunit; n=6; Geobacter|Rep: NADH dehydrogenase I, E subunit - Geobacter sulfurreducens Length = 173 Score = 46.4 bits (105), Expect = 3e-04 Identities = 23/70 (32%), Positives = 41/70 (58%) Frame = +2 Query: 254 GAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVC 433 G ++P+L Q G++P + VAE LN+ +++ V TFY F +P G++ ++VC Sbjct: 36 GNLMPVLQGIQ-DEYGYVPRPTIDLVAERLNVYPSQIFGVLTFYAQFHLKPRGRFIIRVC 94 Query: 434 TTTPCWLRGS 463 T C ++G+ Sbjct: 95 VGTACHVQGA 104 >UniRef50_Q0AVX7 Cluster: Fe-hydrogenase, gamma subunit; n=4; Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep: Fe-hydrogenase, gamma subunit - Syntrophomonas wolfei subsp. wolfei (strain Goettingen) Length = 148 Score = 46.4 bits (105), Expect = 3e-04 Identities = 18/55 (32%), Positives = 33/55 (60%) Frame = +2 Query: 302 WLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 ++P A+ A++ ++P + Y VATFY+ P GK +++C + PC + G+D Sbjct: 31 YIPEDAVVYAAQVFDIPEAKAYGVATFYSYLKVGPRGKNVIRICESAPCHIAGAD 85 >UniRef50_A6PPY8 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa subunit; n=1; Victivallis vadensis ATCC BAA-548|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa subunit - Victivallis vadensis ATCC BAA-548 Length = 170 Score = 46.0 bits (104), Expect = 4e-04 Identities = 25/73 (34%), Positives = 38/73 (52%) Frame = +2 Query: 245 HKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHV 424 + +IP+L Q +L + VA + +P RVY VATFY F +P GKY + Sbjct: 27 YSESKLIPILQEVQAVYK-YLSKDMISYVATSIGVPPSRVYGVATFYAHFSMQPKGKYII 85 Query: 425 QVCTTTPCWLRGS 463 ++C T C ++ S Sbjct: 86 KLCDGTACHVKKS 98 >UniRef50_A3YBB2 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa subunit; n=1; Marinomonas sp. MED121|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa subunit - Marinomonas sp. MED121 Length = 189 Score = 46.0 bits (104), Expect = 4e-04 Identities = 22/69 (31%), Positives = 38/69 (55%) Frame = +2 Query: 254 GAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVC 433 G ++P+L Q G ++P S++ + + LN+ R V+ V TFY F +P G++ ++VC Sbjct: 43 GPLLPILHEVQHQLG-YVPDSSLPIIGKALNISRAEVHGVVTFYHHFSSKPRGRHIIEVC 101 Query: 434 TTTPCWLRG 460 C G Sbjct: 102 RAESCQSMG 110 >UniRef50_Q47WZ1 Cluster: Formate dehydrogenase, gamma subunit; n=1; Colwellia psychrerythraea 34H|Rep: Formate dehydrogenase, gamma subunit - Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibriopsychroerythus) Length = 163 Score = 45.6 bits (103), Expect = 5e-04 Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 2/93 (2%) Frame = +2 Query: 191 TAPNQKRVEALLAIYPEGHKR--GAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRV 364 TA N K ++ + I E H+ GAM+P+L Q + ++P +A+ +A+ LN+ + V Sbjct: 2 TATNDKGLQQIATII-EQHQTLPGAMLPILHAIQN-DLSFIPSNALPLIAKALNVSKAEV 59 Query: 365 YEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463 + V +FY F G + +++C C GS Sbjct: 60 HGVISFYHHFRTEEPGAHVIEICRGESCQAMGS 92 >UniRef50_A4M6K3 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa subunit; n=2; Bacteria|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa subunit - Petrotoga mobilis SJ95 Length = 154 Score = 45.6 bits (103), Expect = 5e-04 Identities = 20/55 (36%), Positives = 34/55 (61%) Frame = +2 Query: 299 GWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463 G++ + ++A+ ++P+ R+Y V +FY+MF P GKY V+VC + C L S Sbjct: 36 GFISEEDILRIAQKRDIPKARLYGVISFYSMFHLEPTGKYIVRVCDSVSCRLNES 90 >UniRef50_A3ETZ6 Cluster: NADH ubiquinone oxidoreductase; n=1; Leptospirillum sp. Group II UBA|Rep: NADH ubiquinone oxidoreductase - Leptospirillum sp. Group II UBA Length = 627 Score = 44.8 bits (101), Expect = 0.001 Identities = 21/68 (30%), Positives = 36/68 (52%) Frame = +2 Query: 257 AMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCT 436 A++PLL ++ + + +++++ L + + TFY F+ P GK V+VC Sbjct: 29 AVLPLLHYYMEKKN-YISEADVSRISQLTGLSVSDILGIGTFYQHFVFHPTGKNSVRVCL 87 Query: 437 TTPCWLRG 460 TTPC RG Sbjct: 88 TTPCLFRG 95 >UniRef50_A1AP34 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa subunit precursor; n=2; Bacteria|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa subunit precursor - Pelobacter propionicus (strain DSM 2379) Length = 169 Score = 44.8 bits (101), Expect = 0.001 Identities = 19/54 (35%), Positives = 31/54 (57%) Frame = +2 Query: 302 WLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463 +LP+ + V E L++P +V+ V +FY F P GKY +++C T C + S Sbjct: 45 YLPMEVLSHVIEELDIPATKVFGVVSFYAHFTLEPRGKYVIRLCDGTACHAKRS 98 >UniRef50_A0J5R7 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa subunit; n=1; Shewanella woodyi ATCC 51908|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa subunit - Shewanella woodyi ATCC 51908 Length = 179 Score = 44.8 bits (101), Expect = 0.001 Identities = 25/92 (27%), Positives = 46/92 (50%) Frame = +2 Query: 191 TAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYE 370 ++ Q+ ++ L++ P+ G I L L Q G W+ +++H ++ +P + Sbjct: 22 SSKEQQGIDELISHSPQ--LAGITIDALKLIQAERG-WVSDASLHALSLYTQIPVADLDS 78 Query: 371 VATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 VATFY + R+P+GK + C C L G + Sbjct: 79 VATFYNLIFRQPVGKVVLHPCDGISCDLMGGE 110 >UniRef50_Q9ZBV8 Cluster: Putative respiratory chain oxidoreductase; n=2; Streptomyces|Rep: Putative respiratory chain oxidoreductase - Streptomyces coelicolor Length = 646 Score = 44.0 bits (99), Expect = 0.002 Identities = 25/72 (34%), Positives = 33/72 (45%) Frame = +2 Query: 248 KRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQ 427 +R ++P L A GW+ A+ V L +P Y VATFY MF RP + Sbjct: 34 RRDQLLPALH-ALNDRVGWISEGALDYVCRRLTVPPAEAYGVATFYAMFSVRPRPATVLH 92 Query: 428 VCTTTPCWLRGS 463 VCT C G+ Sbjct: 93 VCTDLACTAAGA 104 >UniRef50_Q2S5I9 Cluster: NADH-ubiquinone oxidoreductase 24 kDa subunit, putative; n=2; Sphingobacteriales genera incertae sedis|Rep: NADH-ubiquinone oxidoreductase 24 kDa subunit, putative - Salinibacter ruber (strain DSM 13855) Length = 249 Score = 44.0 bits (99), Expect = 0.002 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 5/108 (4%) Frame = +2 Query: 152 DTPEDNPSIPFE-----FTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPIS 316 + P+ +P F +T + ++EA YPE + A++ +L LAQ G+L Sbjct: 36 ELPDQDPDPAFSDDELVWTDEEEAQIEAWKDQYPED--QAAIMKVLWLAQE-KFGYLAPE 92 Query: 317 AMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRG 460 + A+ L++ + Y VATFY + + G Y + VCT C + G Sbjct: 93 VIQLCADTLDMTFTQAYGVATFYHQYFKEEKGTYVLDVCTCFTCQVCG 140 >UniRef50_Q608U6 Cluster: Formate dehydrogenase, gamma subunit; n=3; Proteobacteria|Rep: Formate dehydrogenase, gamma subunit - Methylococcus capsulatus Length = 159 Score = 43.6 bits (98), Expect = 0.002 Identities = 23/71 (32%), Positives = 38/71 (53%) Frame = +2 Query: 254 GAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVC 433 GA++P+L Q G++P A+ ++A+ LNL R V+ V +FY F GK+ + +C Sbjct: 23 GALLPILHGIQ-DRIGFIPEDAVPQIAKALNLSRAEVHGVISFYHYFRTTAPGKHTIHLC 81 Query: 434 TTTPCWLRGSD 466 C S+ Sbjct: 82 RAESCQAMNSE 92 >UniRef50_A1FMP2 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa subunit; n=5; Pseudomonas|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa subunit - Pseudomonas putida W619 Length = 160 Score = 43.6 bits (98), Expect = 0.002 Identities = 23/71 (32%), Positives = 39/71 (54%) Frame = +2 Query: 254 GAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVC 433 GA++P+L Q + G++P +A+ +A LNL V V +FY F P ++ +++C Sbjct: 23 GALLPILHAVQE-SIGFIPDAAVADIAHALNLSLAEVRGVISFYHDFRTAPPARHTLRLC 81 Query: 434 TTTPCWLRGSD 466 C RGS+ Sbjct: 82 RAESCQSRGSE 92 >UniRef50_A3DCI7 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa subunit; n=5; Clostridium|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa subunit - Clostridium thermocellum (strain ATCC 27405 / DSM 1237) Length = 165 Score = 43.2 bits (97), Expect = 0.003 Identities = 24/74 (32%), Positives = 37/74 (50%) Frame = +2 Query: 242 GHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYH 421 G A+I +L Q ++P +++ L + R++ VATFY F P GKY Sbjct: 22 GTSETAIIAILQSIQEEYH-YIPKEVFPYLSKKLKVSEARIFSVATFYENFSLEPKGKYI 80 Query: 422 VQVCTTTPCWLRGS 463 ++VC T C +R S Sbjct: 81 IKVCDGTACHVRKS 94 >UniRef50_Q057X2 Cluster: NADH dehydrogenase I chain E; n=1; Buchnera aphidicola str. Cc (Cinara cedri)|Rep: NADH dehydrogenase I chain E - Buchnera aphidicola subsp. Cinara cedri Length = 156 Score = 42.3 bits (95), Expect = 0.005 Identities = 18/70 (25%), Positives = 38/70 (54%) Frame = +2 Query: 245 HKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHV 424 + + A I L + Q W+ ++ +++IL++P V +ATFY R+P+G+ + Sbjct: 21 NSQAACIEALKIVQEHRK-WICKDSIIAISKILSIPACEVESIATFYCHIFRKPVGRNII 79 Query: 425 QVCTTTPCWL 454 + C + C++ Sbjct: 80 RYCDSVVCFI 89 >UniRef50_A6PMG8 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa subunit precursor; n=1; Victivallis vadensis ATCC BAA-548|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa subunit precursor - Victivallis vadensis ATCC BAA-548 Length = 150 Score = 42.3 bits (95), Expect = 0.005 Identities = 17/55 (30%), Positives = 30/55 (54%) Frame = +2 Query: 299 GWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463 G++ ++ ++E +P + V V +FY F R GKY + +C T C ++GS Sbjct: 30 GYVSDESIRAISEYFGIPEVEVEGVLSFYAQFKRVKPGKYKIAICDGTACHIKGS 84 >UniRef50_A0RMD2 Cluster: Hydrogenosomal NADH dehydrogenase 24 kDa subunit; n=1; Campylobacter fetus subsp. fetus 82-40|Rep: Hydrogenosomal NADH dehydrogenase 24 kDa subunit - Campylobacter fetus subsp. fetus (strain 82-40) Length = 163 Score = 42.3 bits (95), Expect = 0.005 Identities = 23/72 (31%), Positives = 38/72 (52%) Frame = +2 Query: 251 RGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQV 430 R ++P L + QR G ++ + + + L + M E FY+MF ++ GK+ ++ Sbjct: 24 RALVLPSLWMVQRAQG-FIDAKDVLYLEKTLGIRSMFYAEAIGFYSMFNQKSKGKFELKF 82 Query: 431 CTTTPCWLRGSD 466 C T C LRGSD Sbjct: 83 CKTITCKLRGSD 94 >UniRef50_UPI0000E87F9D Cluster: ATP synthase subunit E; n=1; Methylophilales bacterium HTCC2181|Rep: ATP synthase subunit E - Methylophilales bacterium HTCC2181 Length = 157 Score = 41.5 bits (93), Expect = 0.009 Identities = 23/73 (31%), Positives = 36/73 (49%) Frame = +2 Query: 248 KRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQ 427 K GA++PL+ Q + G++P + ++ NL ++ TFY F P GK +Q Sbjct: 21 KPGALLPLMHAIQ-DSLGYIPEDSYPIISSAYNLSIAEIHGFVTFYHHFRTSPSGKNILQ 79 Query: 428 VCTTTPCWLRGSD 466 VC C GS+ Sbjct: 80 VCRAESCQSMGSE 92 >UniRef50_Q28P85 Cluster: NADH dehydrogenase (Ubiquinone) 24 kDa subunit; n=1; Jannaschia sp. CCS1|Rep: NADH dehydrogenase (Ubiquinone) 24 kDa subunit - Jannaschia sp. (strain CCS1) Length = 167 Score = 41.5 bits (93), Expect = 0.009 Identities = 25/90 (27%), Positives = 42/90 (46%) Frame = +2 Query: 197 PNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVA 376 P+ VE I G ++P+L Q G ++P A +A LN+ ++ V Sbjct: 10 PDDLLVEVDAIIQKNIALEGPLLPILHDVQAAFG-YVPDDARALIATALNITEAELHGVI 68 Query: 377 TFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 +FY F R+P GK +++C C G++ Sbjct: 69 SFYHDFRRKPAGKRVLKICRAEACQAMGAN 98 >UniRef50_A6VXL9 Cluster: NADH dehydrogenase (Ubiquinone) 24 kDa subunit; n=3; Gammaproteobacteria|Rep: NADH dehydrogenase (Ubiquinone) 24 kDa subunit - Marinomonas sp. MWYL1 Length = 165 Score = 41.5 bits (93), Expect = 0.009 Identities = 24/72 (33%), Positives = 37/72 (51%) Frame = +2 Query: 248 KRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQ 427 K GA++PLL Q ++P A+ +A L L R V+ V +FY F + G++ V+ Sbjct: 24 KPGALLPLLHAIQ-DRFSYIPEDAVALIAGALKLSRAEVHGVISFYHHFRTKQPGRHVVE 82 Query: 428 VCTTTPCWLRGS 463 VC C G+ Sbjct: 83 VCRAEACQAVGA 94 >UniRef50_A3Z0U6 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa subunit; n=1; Synechococcus sp. WH 5701|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa subunit - Synechococcus sp. WH 5701 Length = 168 Score = 40.3 bits (90), Expect = 0.021 Identities = 24/69 (34%), Positives = 37/69 (53%) Frame = +2 Query: 257 AMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCT 436 A+I +L AQ+ +L + VA L LP RV A+FY +F +P ++ VCT Sbjct: 36 ALIEVLHGAQKLYS-YLSDDLLRHVATRLQLPLSRVKGTASFYHLFRFQPPARHRCVVCT 94 Query: 437 TTPCWLRGS 463 T C ++G+ Sbjct: 95 GTACQIQGA 103 >UniRef50_Q1VMJ2 Cluster: Formate dehydrogenase, beta subunit; n=1; Psychroflexus torquis ATCC 700755|Rep: Formate dehydrogenase, beta subunit - Psychroflexus torquis ATCC 700755 Length = 243 Score = 38.3 bits (85), Expect = 0.083 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 5/94 (5%) Frame = +2 Query: 200 NQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVAT 379 NQ + + I PE +R +I L L Q L + +A ++NLP ++EVA+ Sbjct: 25 NQAAINNVKTILPEILQRDMLIEYLHLIQ-DKVSHLSSDNLSALAFLMNLPLSEIWEVAS 83 Query: 380 FYTMFI-----RRPIGKYHVQVCTTTPCWLRGSD 466 FY F + P +++CT+ C L S+ Sbjct: 84 FYDHFTLVKDSQNPPPTRTIRICTSVTCSLFNSE 117 >UniRef50_Q483I3 Cluster: Formate dehydrogenase, gamma subunit; n=1; Colwellia psychrerythraea 34H|Rep: Formate dehydrogenase, gamma subunit - Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibriopsychroerythus) Length = 168 Score = 37.9 bits (84), Expect = 0.11 Identities = 21/70 (30%), Positives = 35/70 (50%) Frame = +2 Query: 254 GAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVC 433 GA++P+L Q + ++P A+ VA+ L +Y V TFY F G++ +++C Sbjct: 26 GALLPILHDIQH-HFDYIPKKAIAIVAQGLQQTEAEIYGVITFYAHFQLNKPGRHIIEIC 84 Query: 434 TTTPCWLRGS 463 C GS Sbjct: 85 RGEACQAMGS 94 >UniRef50_Q0AL75 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa subunit; n=1; Maricaulis maris MCS10|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa subunit - Maricaulis maris (strain MCS10) Length = 163 Score = 37.5 bits (83), Expect = 0.14 Identities = 21/70 (30%), Positives = 37/70 (52%) Frame = +2 Query: 257 AMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCT 436 A+I +L Q + G + +A+ +A+ LNL R V V +FY F R+P ++ ++C Sbjct: 26 ALIEVLHWLQA-SAGHISDAAIATIADALNLSRAEVLGVVSFYHDFRRQPGARHTFKLCR 84 Query: 437 TTPCWLRGSD 466 C G++ Sbjct: 85 AEACQAAGAE 94 >UniRef50_A4XP94 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa subunit; n=1; Pseudomonas mendocina ymp|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa subunit - Pseudomonas mendocina ymp Length = 164 Score = 37.1 bits (82), Expect = 0.19 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 1/96 (1%) Frame = +2 Query: 176 IPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLL-DLAQRXNGGWLPISAMHKVAEILNLP 352 +P F AP Q + + GA++P+L D+ R G +P + +AE L L Sbjct: 4 LPQRF-APEQCEAVTREVLAAHRGQPGALLPILHDIQDRL--GAVPPELLPLIAEDLCLS 60 Query: 353 RMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRG 460 R V+ V +FY F P G+ +++C C G Sbjct: 61 RAEVHGVVSFYHDFRATPPGRQVLKLCQAEACQSMG 96 >UniRef50_Q63RZ3 Cluster: NAD-dependent formate dehydrogenase gamma subunit; n=28; Burkholderia|Rep: NAD-dependent formate dehydrogenase gamma subunit - Burkholderia pseudomallei (Pseudomonas pseudomallei) Length = 171 Score = 36.3 bits (80), Expect = 0.33 Identities = 21/91 (23%), Positives = 45/91 (49%) Frame = +2 Query: 194 APNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEV 373 +P+ +AL+ + + + +++ +L Q + G++P + + +A+ LNL R V+ V Sbjct: 16 SPHSVAPDALVRAHAQPGR--SLVAILHAIQ-DDAGYVPPACVEPLAKALNLSRAEVHGV 72 Query: 374 ATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466 T+Y F P +++C C G + Sbjct: 73 LTYYHHFRTAPPAHVTIRLCRAEACRSMGGE 103 >UniRef50_Q5P4U3 Cluster: Formate dehydrogenase, NAD(P) reducing, beta subunit; n=41; Proteobacteria|Rep: Formate dehydrogenase, NAD(P) reducing, beta subunit - Azoarcus sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1)) Length = 585 Score = 35.5 bits (78), Expect = 0.58 Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 5/93 (5%) Frame = +2 Query: 197 PNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVA 376 P R+ A A+ E + +I L Q +G L + +AE + L R V+EVA Sbjct: 36 PASARLAASAALAGETPRADRLIEYLHRLQDEHGA-LHADHLAALAEAMKLARAEVFEVA 94 Query: 377 TFYTMFIRRPIG-----KYHVQVCTTTPCWLRG 460 TFY F P G V+VC + C + G Sbjct: 95 TFYHHFDFVPAGGKAPPALTVRVCESLGCAMAG 127 >UniRef50_Q47HE6 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa subunit:Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; n=1; Dechloromonas aromatica RCB|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa subunit:Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit - Dechloromonas aromatica (strain RCB) Length = 632 Score = 35.5 bits (78), Expect = 0.58 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = +2 Query: 302 WLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHV 424 W+ A+ ++ L +PR ++ VA FY F P GKY V Sbjct: 42 WISPEAIDRMQVTLGVPRTKIEGVAGFYAFFYTEPRGKYRV 82 >UniRef50_A7RRZ0 Cluster: Predicted protein; n=1; Nematostella vectensis|Rep: Predicted protein - Nematostella vectensis Length = 188 Score = 33.1 bits (72), Expect = 3.1 Identities = 13/42 (30%), Positives = 24/42 (57%) Frame = -3 Query: 433 THLYMILSYWSPNKHSIECCNFIHSHSW*V*NFSYFVHGRNW 308 +H ++ LSY + H + + IHSH+W S+ +H ++W Sbjct: 141 SHHWVTLSYLIHSHHWVTLSHLIHSHNW--VTLSHLIHSQHW 180 >UniRef50_Q5NPV1 Cluster: Two-component response regulator; n=3; Sphingomonadales|Rep: Two-component response regulator - Zymomonas mobilis Length = 300 Score = 32.3 bits (70), Expect = 5.4 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Frame = +2 Query: 140 FVHRDTPEDNPS-IPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPIS 316 F+H+ +P N + IP A + +EA+L Y +G GA+ L + NGG L + Sbjct: 16 FIHQMSPRANQAFIPVNCAALPETMLEAMLFGYTKGSFTGALADNKGLFRSANGGTLLLD 75 Query: 317 AMHKVAEILNLPRMRVYE 370 + ++ L +RV + Sbjct: 76 EISELPLGLQAKLLRVLQ 93 >UniRef50_Q9Z5S2 Cluster: Torf protein; n=2; Zymomonas mobilis|Rep: Torf protein - Zymomonas mobilis Length = 403 Score = 32.3 bits (70), Expect = 5.4 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Frame = +2 Query: 140 FVHRDTPEDNPS-IPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPIS 316 F+H+ +P N + IP A + +EA+L Y +G GA+ L + NGG L + Sbjct: 157 FIHQMSPRANQAFIPVNCAALPETMLEAMLFGYTKGSFTGALADNKGLFRSANGGTLLLD 216 Query: 317 AMHKVAEILNLPRMRVYE 370 + ++ L +RV + Sbjct: 217 EISELPLGLQAKLLRVLQ 234 >UniRef50_A1WBG0 Cluster: NADH dehydrogenase (Quinone) precursor; n=6; Proteobacteria|Rep: NADH dehydrogenase (Quinone) precursor - Acidovorax sp. (strain JS42) Length = 640 Score = 31.9 bits (69), Expect = 7.2 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 8/92 (8%) Frame = +2 Query: 212 VEALLAIYP-EGHKRGAMIPLLDLAQRXNGGWLPISAMHKVA--EILNLPRMRVYEVATF 382 V LL P +G++R +I L R N + + H VA +NLP +VYEVA+F Sbjct: 45 VAQLLGPRPADGYRRDLLIEYL---HRLNDHFGVLHDRHLVALARQMNLPMAQVYEVASF 101 Query: 383 YTMF--IR---RPIGKYHVQVCTTTPCWLRGS 463 Y F +R + V+VC + C + G+ Sbjct: 102 YHHFEIVRGHDAQAPRLVVRVCDSLSCTMAGA 133 >UniRef50_Q55Y42 Cluster: Putative uncharacterized protein; n=1; Filobasidiella neoformans|Rep: Putative uncharacterized protein - Cryptococcus neoformans (Filobasidiella neoformans) Length = 294 Score = 31.9 bits (69), Expect = 7.2 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Frame = +3 Query: 48 CYLASKLGFRPCGACLLEVCRP-LLPSSMTVSSSTETPLKTTLVSRL 185 CYL L F C ACLL C+P LPS S + PL ++V R+ Sbjct: 24 CYLHDFLPFN-CPACLLAFCQPHFLPS----QHSCKAPLPASMVDRI 65 >UniRef50_A5I5J7 Cluster: Sensor protein; n=4; Clostridium botulinum|Rep: Sensor protein - Clostridium botulinum A str. ATCC 3502 Length = 702 Score = 31.5 bits (68), Expect = 9.5 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%) Frame = +2 Query: 137 LFVHRDTPEDNPSIPFEFTAPNQKRVEALLAIYP---EGHKRGAMIPLLDLAQ 286 +F+ ++ IP FT N ++V L + P EG K+GA++ L+D+ Q Sbjct: 89 VFIALKEQKEIKEIPLIFTKNNYEKVCFSLTVIPINLEGTKKGALVNLMDITQ 141 Database: uniref50 Posted date: Oct 5, 2007 11:19 AM Number of letters in database: 575,637,011 Number of sequences in database: 1,657,284 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 455,555,388 Number of Sequences: 1657284 Number of extensions: 8100686 Number of successful extensions: 19719 Number of sequences better than 10.0: 151 Number of HSP's better than 10.0 without gapping: 19269 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 19684 length of database: 575,637,011 effective HSP length: 94 effective length of database: 419,852,315 effective search space used: 25610991215 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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