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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I19
         (468 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P19404 Cluster: NADH dehydrogenase [ubiquinone] flavopr...   181   8e-45
UniRef50_O22769 Cluster: NADH-ubiquinone oxidoreductase 24 kDa s...   144   1e-33
UniRef50_Q5ACX6 Cluster: Potential mitochondrial Complex I, NUHM...   143   1e-33
UniRef50_Q9UUT9 Cluster: Subunit NUHM of protein NADH:Ubiquinone...   139   3e-32
UniRef50_Q6V9B3 Cluster: NADH:ubiquinone oxidoreductase 24 kD su...   137   1e-31
UniRef50_Q2TZN8 Cluster: NADH:ubiquinone oxidoreductase; n=11; P...   137   1e-31
UniRef50_Q54F10 Cluster: NADH dehydrogenase; n=1; Dictyostelium ...   132   4e-30
UniRef50_Q00RX3 Cluster: Putative NADH-ubiquinone oxidoreductase...   129   3e-29
UniRef50_Q4UM09 Cluster: NADH-quinone oxidoreductase subunit E; ...   128   5e-29
UniRef50_A0E600 Cluster: Chromosome undetermined scaffold_8, who...   126   2e-28
UniRef50_Q4QEG7 Cluster: NADH-ubiquinone oxidoreductase, mitocho...   120   1e-26
UniRef50_Q2GDD2 Cluster: NADH dehydrogenase I, E subunit; n=1; N...   118   8e-26
UniRef50_Q5DLW2 Cluster: Hydrogenosomal NADH dehydrogenase 24 kD...   117   1e-25
UniRef50_Q9VVF0 Cluster: CG6485-PA; n=2; Sophophora|Rep: CG6485-...   117   1e-25
UniRef50_Q1GTK2 Cluster: NADH-quinone oxidoreductase, E subunit;...   116   3e-25
UniRef50_Q0BSK6 Cluster: NADH-quinone oxidoreductase chain E; n=...   115   6e-25
UniRef50_A5NY87 Cluster: NADH-quinone oxidoreductase, E subunit;...   109   3e-23
UniRef50_A5CES4 Cluster: NADH dehydrogenase I chain E; n=1; Orie...   109   3e-23
UniRef50_Q0C8X0 Cluster: Putative uncharacterized protein; n=1; ...   101   6e-21
UniRef50_A7DLV4 Cluster: NADH-quinone oxidoreductase, E subunit;...   100   1e-20
UniRef50_Q83BQ9 Cluster: NADH dehydrogenase I, E subunit; n=3; C...    98   1e-19
UniRef50_A3UCV4 Cluster: ATP synthase subunit E; n=4; Alphaprote...    98   1e-19
UniRef50_Q5FGV2 Cluster: NADH-quinone oxidoreductase chain E; n=...    97   2e-19
UniRef50_Q8G1B3 Cluster: NADH dehydrogenase I, E subunit; n=9; R...    96   4e-19
UniRef50_Q11VB6 Cluster: NADH dehydrogenase I chain E; n=2; Bact...    93   4e-18
UniRef50_P56909 Cluster: NADH-quinone oxidoreductase subunit E 1...    92   6e-18
UniRef50_A6H1R0 Cluster: NADH dehydrogenase I, E subunit; n=2; B...    91   1e-17
UniRef50_Q98KQ9 Cluster: NADH-ubiquinone dehydrogenase chain E 1...    90   3e-17
UniRef50_A3U1M2 Cluster: ATP synthase subunit E; n=9; Alphaprote...    88   1e-16
UniRef50_A2F771 Cluster: Respiratory-chain NADH dehydrogenase 24...    85   6e-16
UniRef50_P29914 Cluster: NADH-quinone oxidoreductase chain 2; n=...    83   4e-15
UniRef50_P56910 Cluster: NADH-quinone oxidoreductase subunit E 2...    79   6e-14
UniRef50_Q9PGJ1 Cluster: NADH-ubiquinone oxidoreductase, NQO2 su...    78   8e-14
UniRef50_Q0PQQ4 Cluster: NADH dehydrogenase I E subunit; n=1; En...    78   8e-14
UniRef50_Q82TU7 Cluster: Respiratory-chain NADH dehydrogenase 24...    77   1e-13
UniRef50_A1WXW3 Cluster: NADH-quinone oxidoreductase, E subunit;...    77   1e-13
UniRef50_Q6MIR6 Cluster: NADH dehydrogenase I chain E; n=1; Bdel...    76   3e-13
UniRef50_A5UZH6 Cluster: NADH-quinone oxidoreductase, E subunit;...    75   6e-13
UniRef50_Q02CT9 Cluster: NADH-quinone oxidoreductase, E subunit;...    74   1e-12
UniRef50_A6FCN2 Cluster: NuoE2 NADH I CHAIN E; n=1; Moritella sp...    74   1e-12
UniRef50_Q67P18 Cluster: NADH dehydrogenase I subunit E; n=1; Sy...    73   2e-12
UniRef50_A7CUG1 Cluster: NADH-quinone oxidoreductase, E subunit;...    72   7e-12
UniRef50_A4SXP9 Cluster: NADH-quinone oxidoreductase, E subunit;...    71   1e-11
UniRef50_Q2JFL6 Cluster: NADH-quinone oxidoreductase, E subunit;...    70   3e-11
UniRef50_Q092T1 Cluster: NADH-ubiquinone oxidoreductase 24 kDa s...    69   4e-11
UniRef50_Q6MDR2 Cluster: Putative NADH-ubiquinone oxidoreductase...    68   9e-11
UniRef50_Q2LQE7 Cluster: NADH-quinone oxidoreductase chain F; n=...    67   2e-10
UniRef50_A3THI9 Cluster: ATP synthase subunit E; n=3; Actinomyce...    66   4e-10
UniRef50_A1AVR6 Cluster: NADH-quinone oxidoreductase, E subunit;...    66   5e-10
UniRef50_Q0EZQ5 Cluster: NADH dehydrogenase I chain E; n=1; Mari...    64   1e-09
UniRef50_P0AFD3 Cluster: NADH-quinone oxidoreductase subunit E; ...    64   1e-09
UniRef50_Q0AZ71 Cluster: NADH:ubiquinone oxidoreductase 24 kD su...    64   1e-09
UniRef50_A7HII1 Cluster: NADH-quinone oxidoreductase, E subunit;...    63   3e-09
UniRef50_Q6A6G2 Cluster: NADH dehydrogenase I chain E; n=1; Prop...    63   3e-09
UniRef50_A7HLQ9 Cluster: NADH-quinone oxidoreductase, E subunit;...    63   3e-09
UniRef50_Q746S5 Cluster: NADH dehydrogenase I, E subunit; n=4; D...    62   8e-09
UniRef50_Q2LYE8 Cluster: NADH:ubiquinone oxidoreductase 24 kD su...    62   8e-09
UniRef50_A3ERJ3 Cluster: NADH ubiquinone oxidoreductase 24 kD su...    62   8e-09
UniRef50_Q5JIQ1 Cluster: NADH:ubiquinone oxidoreductase, subunit...    62   8e-09
UniRef50_Q9WXM7 Cluster: NADP-reducing hydrogenase, subunit A; n...    61   1e-08
UniRef50_Q8ABI7 Cluster: NADH-ubiquinone oxidoreductase subunit;...    61   1e-08
UniRef50_Q3ZXM4 Cluster: Hydrogenase subunit HymA; n=13; cellula...    61   1e-08
UniRef50_A6PRE1 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa...    61   1e-08
UniRef50_A4J528 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa...    61   1e-08
UniRef50_P65574 Cluster: NADH-quinone oxidoreductase subunit E; ...    60   2e-08
UniRef50_Q608Y0 Cluster: NADH dehydrogenase I, E subunit; n=5; B...    59   4e-08
UniRef50_A4J9N9 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa...    59   4e-08
UniRef50_Q3A640 Cluster: NADH:ubiquinone oxidoreductase 24 kD su...    58   7e-08
UniRef50_Q1EVZ9 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa...    58   1e-07
UniRef50_A0UV12 Cluster: NADH-quinone oxidoreductase, E subunit;...    58   1e-07
UniRef50_O27591 Cluster: NADP-reducing hydrogenase, subunit A; n...    58   1e-07
UniRef50_O13691 Cluster: Probable NADH-ubiquinone oxidoreductase...    58   1e-07
UniRef50_Q1PYY2 Cluster: Similar to nuoE subunit of the NADH:ubi...    57   2e-07
UniRef50_Q67JG1 Cluster: Putative iron hydrogenase small subunit...    57   2e-07
UniRef50_A5FSK9 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa...    56   3e-07
UniRef50_Q9S5X7 Cluster: Fe-hydrogenase, subunit gamma; n=5; The...    56   4e-07
UniRef50_Q1NQY7 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa...    56   4e-07
UniRef50_A5FS13 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa...    56   4e-07
UniRef50_Q7NZH7 Cluster: NADH-ubiquinone oxidoreductase, chain E...    56   5e-07
UniRef50_Q1PWG7 Cluster: Similar to to proton-translocating NADH...    56   5e-07
UniRef50_A1HP41 Cluster: NADH-quinone oxidoreductase, E subunit;...    56   5e-07
UniRef50_Q8YYU5 Cluster: NADH dehydrogenase I chain E; n=4; Bact...    55   9e-07
UniRef50_Q1PW48 Cluster: Similar to NADH:ubiquinone oxidoreducta...    54   1e-06
UniRef50_A5D2H5 Cluster: NADH:ubiquinone oxidoreductase 24 kD su...    54   1e-06
UniRef50_Q9RU91 Cluster: NADH dehydrogenase I, E subunit; n=2; D...    54   2e-06
UniRef50_Q8RBD2 Cluster: NADH:ubiquinone oxidoreductase 24 kD su...    54   2e-06
UniRef50_Q6FE68 Cluster: NADH dehydrogenase I chain E; n=5; Mora...    54   2e-06
UniRef50_Q0AWA4 Cluster: NADH:ubiquinone oxidoreductase 24 kD su...    54   2e-06
UniRef50_Q89AU3 Cluster: NADH-quinone oxidoreductase subunit E; ...    54   2e-06
UniRef50_Q1IS36 Cluster: NADH-quinone oxidoreductase, E subunit;...    53   3e-06
UniRef50_Q01WJ0 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa...    53   4e-06
UniRef50_A0UVM6 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa...    53   4e-06
UniRef50_Q2FP98 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa...    53   4e-06
UniRef50_A5V6C3 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa...    52   5e-06
UniRef50_Q3A461 Cluster: NADP-reducing hydrogenase chain A; n=5;...    52   6e-06
UniRef50_A0LJN9 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa...    52   6e-06
UniRef50_Q2RHR8 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa...    52   8e-06
UniRef50_Q2AG84 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa...    52   8e-06
UniRef50_Q4AMU5 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa...    51   1e-05
UniRef50_Q0PIE2 Cluster: NAD(P)H-quinone oxidoreductase 24 kDa s...    51   1e-05
UniRef50_A0LLS9 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa...    51   1e-05
UniRef50_A7IL17 Cluster: NADH dehydrogenase (Ubiquinone) 24 kDa ...    50   2e-05
UniRef50_A5UZ48 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa...    50   2e-05
UniRef50_A1ALP3 Cluster: NADH-quinone oxidoreductase, E subunit;...    50   2e-05
UniRef50_Q4AHT8 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa...    50   3e-05
UniRef50_O66842 Cluster: NADH-quinone oxidoreductase subunit E; ...    50   3e-05
UniRef50_Q749M0 Cluster: NAD-reducing hydrogenase, putative; n=4...    49   4e-05
UniRef50_Q2C5T5 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa...    49   4e-05
UniRef50_Q98BW7 Cluster: NAD-dependent formate dehydrogenase gam...    49   6e-05
UniRef50_Q835I9 Cluster: NAD-dependent formate dehydrogenase, ga...    48   8e-05
UniRef50_Q2LS97 Cluster: NADH-quinone oxidoreductase chain F; n=...    48   8e-05
UniRef50_Q6SGN4 Cluster: NADH-quinone oxidoreductase, E subunit;...    48   8e-05
UniRef50_Q89QJ0 Cluster: NADH dehydrogenase I chain E; n=16; Alp...    48   1e-04
UniRef50_A3JB74 Cluster: ATP synthase subunit E; n=1; Marinobact...    48   1e-04
UniRef50_A0QNT7 Cluster: Formate dehydrogenase, gamma subunit; n...    48   1e-04
UniRef50_Q6N1Z1 Cluster: NADH-ubiquinone dehydrogenase chain E; ...    47   2e-04
UniRef50_A0LGJ1 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa...    47   2e-04
UniRef50_Q74GA4 Cluster: NADH dehydrogenase I, E subunit; n=6; G...    46   3e-04
UniRef50_Q0AVX7 Cluster: Fe-hydrogenase, gamma subunit; n=4; Syn...    46   3e-04
UniRef50_A6PPY8 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa...    46   4e-04
UniRef50_A3YBB2 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa...    46   4e-04
UniRef50_Q47WZ1 Cluster: Formate dehydrogenase, gamma subunit; n...    46   5e-04
UniRef50_A4M6K3 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa...    46   5e-04
UniRef50_A3ETZ6 Cluster: NADH ubiquinone oxidoreductase; n=1; Le...    45   0.001
UniRef50_A1AP34 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa...    45   0.001
UniRef50_A0J5R7 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa...    45   0.001
UniRef50_Q9ZBV8 Cluster: Putative respiratory chain oxidoreducta...    44   0.002
UniRef50_Q2S5I9 Cluster: NADH-ubiquinone oxidoreductase 24 kDa s...    44   0.002
UniRef50_Q608U6 Cluster: Formate dehydrogenase, gamma subunit; n...    44   0.002
UniRef50_A1FMP2 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa...    44   0.002
UniRef50_A3DCI7 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa...    43   0.003
UniRef50_Q057X2 Cluster: NADH dehydrogenase I chain E; n=1; Buch...    42   0.005
UniRef50_A6PMG8 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa...    42   0.005
UniRef50_A0RMD2 Cluster: Hydrogenosomal NADH dehydrogenase 24 kD...    42   0.005
UniRef50_UPI0000E87F9D Cluster: ATP synthase subunit E; n=1; Met...    42   0.009
UniRef50_Q28P85 Cluster: NADH dehydrogenase (Ubiquinone) 24 kDa ...    42   0.009
UniRef50_A6VXL9 Cluster: NADH dehydrogenase (Ubiquinone) 24 kDa ...    42   0.009
UniRef50_A3Z0U6 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa...    40   0.021
UniRef50_Q1VMJ2 Cluster: Formate dehydrogenase, beta subunit; n=...    38   0.083
UniRef50_Q483I3 Cluster: Formate dehydrogenase, gamma subunit; n...    38   0.11 
UniRef50_Q0AL75 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa...    38   0.14 
UniRef50_A4XP94 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa...    37   0.19 
UniRef50_Q63RZ3 Cluster: NAD-dependent formate dehydrogenase gam...    36   0.33 
UniRef50_Q5P4U3 Cluster: Formate dehydrogenase, NAD(P) reducing,...    36   0.58 
UniRef50_Q47HE6 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa...    36   0.58 
UniRef50_A7RRZ0 Cluster: Predicted protein; n=1; Nematostella ve...    33   3.1  
UniRef50_Q5NPV1 Cluster: Two-component response regulator; n=3; ...    32   5.4  
UniRef50_Q9Z5S2 Cluster: Torf protein; n=2; Zymomonas mobilis|Re...    32   5.4  
UniRef50_A1WBG0 Cluster: NADH dehydrogenase (Quinone) precursor;...    32   7.2  
UniRef50_Q55Y42 Cluster: Putative uncharacterized protein; n=1; ...    32   7.2  
UniRef50_A5I5J7 Cluster: Sensor protein; n=4; Clostridium botuli...    31   9.5  

>UniRef50_P19404 Cluster: NADH dehydrogenase [ubiquinone]
           flavoprotein 2, mitochondrial precursor; n=64; cellular
           organisms|Rep: NADH dehydrogenase [ubiquinone]
           flavoprotein 2, mitochondrial precursor - Homo sapiens
           (Human)
          Length = 249

 Score =  181 bits (440), Expect = 8e-45
 Identities = 79/111 (71%), Positives = 95/111 (85%)
 Frame = +2

Query: 134 SLFVHRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPI 313
           +LFVHRDTPE+NP  PF+FT  N KR+EA++  YPEGHK  A++P+LDLAQR NG WLPI
Sbjct: 37  ALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNG-WLPI 95

Query: 314 SAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
           SAM+KVAE+L +P MRVYEVATFYTM+ R+P+GKYH+QVCTTTPC LR SD
Sbjct: 96  SAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSD 146


>UniRef50_O22769 Cluster: NADH-ubiquinone oxidoreductase 24 kDa
           subunit, mitochondrial precursor; n=8;
           Viridiplantae|Rep: NADH-ubiquinone oxidoreductase 24 kDa
           subunit, mitochondrial precursor - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 255

 Score =  144 bits (348), Expect = 1e-33
 Identities = 60/110 (54%), Positives = 86/110 (78%)
 Frame = +2

Query: 134 SLFVHRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPI 313
           +L  H D+P++ P +P+EF+  NQ +V+ +L+ YP  +K+ A+IPLLDLAQ+ NGGWLP+
Sbjct: 31  ALNYHLDSPDNKPDLPWEFSEANQSKVKEILSYYPSNYKQSAVIPLLDLAQQQNGGWLPV 90

Query: 314 SAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463
           SAM+ VA+++ +  +RVYEVATFY+MF R  +GKYH+ VC TTPC +RGS
Sbjct: 91  SAMNAVAKVIEVAPIRVYEVATFYSMFNRAKVGKYHLLVCGTTPCMIRGS 140


>UniRef50_Q5ACX6 Cluster: Potential mitochondrial Complex I,
           NUHM_24kd subunit; n=5; Saccharomycetales|Rep: Potential
           mitochondrial Complex I, NUHM_24kd subunit - Candida
           albicans (Yeast)
          Length = 243

 Score =  143 bits (347), Expect = 1e-33
 Identities = 67/108 (62%), Positives = 85/108 (78%)
 Frame = +2

Query: 143 VHRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAM 322
           VHRDT EDNP+I FEF + N+KR E ++A YP  +K+GA +PLLDL QR  G +  IS M
Sbjct: 31  VHRDTKEDNPNIAFEFNSENKKRAEEIIAKYPPQYKKGACMPLLDLGQRQLG-FTSISVM 89

Query: 323 HKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
           + VA++L++P MRVYEVATFYTM+ R P+GKY++QVCTTTPC L GSD
Sbjct: 90  NYVAKLLDMPPMRVYEVATFYTMYNRHPMGKYNLQVCTTTPCQLCGSD 137


>UniRef50_Q9UUT9 Cluster: Subunit NUHM of protein NADH:Ubiquinone
           Oxidoreductase; n=3; Fungi/Metazoa group|Rep: Subunit
           NUHM of protein NADH:Ubiquinone Oxidoreductase -
           Yarrowia lipolytica (Candida lipolytica)
          Length = 243

 Score =  139 bits (336), Expect = 3e-32
 Identities = 63/108 (58%), Positives = 83/108 (76%)
 Frame = +2

Query: 143 VHRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAM 322
           VHR+T  +NPSIPFEF+  N KR E ++A YP  +K+ A++PLLD+ QR  G +  IS M
Sbjct: 32  VHRNTENNNPSIPFEFSPENMKRAEEVIAKYPPQYKKAAVMPLLDIGQRQLG-YTSISVM 90

Query: 323 HKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
           + VA++L +P MRVYEVATFYTM+ R P+G+YH+Q+CTTTPC L GSD
Sbjct: 91  NYVAKLLEMPPMRVYEVATFYTMYNRTPMGRYHLQICTTTPCQLCGSD 138


>UniRef50_Q6V9B3 Cluster: NADH:ubiquinone oxidoreductase 24 kD
           subunit; n=2; cellular organisms|Rep: NADH:ubiquinone
           oxidoreductase 24 kD subunit - Chlamydomonas reinhardtii
          Length = 282

 Score =  137 bits (332), Expect = 1e-31
 Identities = 60/111 (54%), Positives = 84/111 (75%)
 Frame = +2

Query: 131 DSLFVHRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLP 310
           D   +H+DTPE+N +  FEF+    K V  ++A YP  +K+ A+IP+LD+ Q+ NGGWL 
Sbjct: 46  DIFNIHKDTPENNAATSFEFSEATLKVVNDIIARYPPNYKQSAIIPVLDVTQQENGGWLS 105

Query: 311 ISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463
           ++AM++VA++L++  +RVYEVATFYTMF R  IGKYHVQ+C TTPC L+GS
Sbjct: 106 LAAMNRVAKLLDMAPIRVYEVATFYTMFNRTKIGKYHVQICGTTPCRLQGS 156


>UniRef50_Q2TZN8 Cluster: NADH:ubiquinone oxidoreductase; n=11;
           Pezizomycotina|Rep: NADH:ubiquinone oxidoreductase -
           Aspergillus oryzae
          Length = 270

 Score =  137 bits (331), Expect = 1e-31
 Identities = 63/110 (57%), Positives = 82/110 (74%)
 Frame = +2

Query: 131 DSLFVHRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLP 310
           DSL VHR+ P +NPSIPF F   NQ+ ++ +L  YP  +K+ A++PLLDL QR +G +  
Sbjct: 37  DSLSVHRNKPTNNPSIPFTFNEQNQRLIDEILKRYPPQYKKAAVMPLLDLGQRQHG-FTS 95

Query: 311 ISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRG 460
           IS M++VA +L +P MRVYEVATFYTM+ R P+GKY VQ+CTTTPC L G
Sbjct: 96  ISVMNEVARLLEMPPMRVYEVATFYTMYNREPVGKYFVQLCTTTPCQLGG 145


>UniRef50_Q54F10 Cluster: NADH dehydrogenase; n=1; Dictyostelium
           discoideum AX4|Rep: NADH dehydrogenase - Dictyostelium
           discoideum AX4
          Length = 247

 Score =  132 bits (319), Expect = 4e-30
 Identities = 62/111 (55%), Positives = 79/111 (71%)
 Frame = +2

Query: 131 DSLFVHRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLP 310
           D+L  H +T ++N   PF+FT  N  +VE +LA YP+ +++ A+IPLLDLAQR NGGW+ 
Sbjct: 35  DALSRHVETEDNNEHTPFDFTQENLVKVEKILAKYPKQYRQSALIPLLDLAQRQNGGWIS 94

Query: 311 ISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463
           + AM KVA I  +  M  YEVA+FYTMF R  IG+  VQVCTTTPC LRGS
Sbjct: 95  LRAMDKVAHICGIAPMTAYEVASFYTMFNRTKIGENFVQVCTTTPCMLRGS 145


>UniRef50_Q00RX3 Cluster: Putative NADH-ubiquinone oxidoreductase;
           n=1; Ostreococcus tauri|Rep: Putative NADH-ubiquinone
           oxidoreductase - Ostreococcus tauri
          Length = 265

 Score =  129 bits (311), Expect = 3e-29
 Identities = 59/107 (55%), Positives = 79/107 (73%)
 Frame = +2

Query: 143 VHRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAM 322
           VHRD PEDN ++ + F A  + +V+A+L  YP  +KR AMIPLLDLAQ+ N G L ++ M
Sbjct: 26  VHRDVPEDNSTMTWTFEASVRPKVDAILRRYPSNYKRSAMIPLLDLAQQQNKGHLTLAMM 85

Query: 323 HKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463
           + +A++L +  +RVYEVATFY+MF R+ +GK HV VC TTPC LRGS
Sbjct: 86  NHIADVLEVAPIRVYEVATFYSMFNRQKMGKLHVMVCGTTPCMLRGS 132


>UniRef50_Q4UM09 Cluster: NADH-quinone oxidoreductase subunit E;
           n=18; Alphaproteobacteria|Rep: NADH-quinone
           oxidoreductase subunit E - Rickettsia felis (Rickettsia
           azadi)
          Length = 167

 Score =  128 bits (310), Expect = 5e-29
 Identities = 57/98 (58%), Positives = 69/98 (70%)
 Frame = +2

Query: 173 SIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLP 352
           S  F F   N    E ++  YP   KR A++PLLDLAQR NGGWLP+ A+  VA +L +P
Sbjct: 2   STNFTFDKKNLNLAEDIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMP 61

Query: 353 RMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
            MR YEVATFY+MF  + +GKYH+QVCTTTPCWL GSD
Sbjct: 62  YMRAYEVATFYSMFNLKRVGKYHIQVCTTTPCWLHGSD 99


>UniRef50_A0E600 Cluster: Chromosome undetermined scaffold_8, whole
           genome shotgun sequence; n=5; Oligohymenophorea|Rep:
           Chromosome undetermined scaffold_8, whole genome shotgun
           sequence - Paramecium tetraurelia
          Length = 263

 Score =  126 bits (304), Expect = 2e-28
 Identities = 57/111 (51%), Positives = 81/111 (72%), Gaps = 1/111 (0%)
 Frame = +2

Query: 134 SLFV-HRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLP 310
           ++FV HR+  +++ S+PF+FT  N K++EA+LA +P   K+   IPLL LAQ+ N  +L 
Sbjct: 19  NIFVAHRNRDDNSDSVPFDFTDENYKKIEAILAKFPSNEKKSGTIPLLMLAQKQNNNFLS 78

Query: 311 ISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463
           +SAM K+A+IL +P M VYE A+FY+MF R  +GK+H+QVC TTPC L GS
Sbjct: 79  LSAMKKIAKILEIPEMDVYETASFYSMFNRERVGKFHLQVCGTTPCQLCGS 129


>UniRef50_Q4QEG7 Cluster: NADH-ubiquinone oxidoreductase,
           mitochondrial, putative; n=6; Trypanosomatidae|Rep:
           NADH-ubiquinone oxidoreductase, mitochondrial, putative
           - Leishmania major
          Length = 273

 Score =  120 bits (290), Expect = 1e-26
 Identities = 51/108 (47%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
 Frame = +2

Query: 146 HRDTPEDNPSIPFEFTAPNQKRVE-ALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAM 322
           H++T  DN  IP++FT  + +++   +L  +P G +  A IPLL LAQ+  GG++P++AM
Sbjct: 40  HQNTDYDNTRIPWDFTTSSYEKIHNEILPKFPRGRRISATIPLLHLAQQQQGGYIPVTAM 99

Query: 323 HKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
           +K+A+I  +P M V+E  TFY+MF R P+GKYH+Q C TTPC L G+D
Sbjct: 100 YKIAKICEVPPMHVFETVTFYSMFNRHPVGKYHIQFCRTTPCMLCGAD 147


>UniRef50_Q2GDD2 Cluster: NADH dehydrogenase I, E subunit; n=1;
           Neorickettsia sennetsu str. Miyayama|Rep: NADH
           dehydrogenase I, E subunit - Neorickettsia sennetsu
           (strain Miyayama)
          Length = 181

 Score =  118 bits (283), Expect = 8e-26
 Identities = 51/95 (53%), Positives = 69/95 (72%)
 Frame = +2

Query: 182 FEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMR 361
           F F+  N + V  +LA YP   KR A++PLL L QR +  W+PI+AM  VA++L LP ++
Sbjct: 24  FCFSEENSREVARILAKYPASRKRSAVLPLLHLVQRQHENWIPIAAMDHVAQLLGLPVIK 83

Query: 362 VYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
           VYEVA+FY+MF   P+GK+ ++VC TTPCWLRGSD
Sbjct: 84  VYEVASFYSMFNTAPVGKHTIRVCRTTPCWLRGSD 118


>UniRef50_Q5DLW2 Cluster: Hydrogenosomal NADH dehydrogenase 24 kDa
           subunit; n=1; Nyctotherus ovalis|Rep: Hydrogenosomal
           NADH dehydrogenase 24 kDa subunit - Nyctotherus ovalis
          Length = 259

 Score =  117 bits (282), Expect = 1e-25
 Identities = 53/109 (48%), Positives = 75/109 (68%)
 Frame = +2

Query: 137 LFVHRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPIS 316
           L  H +TPE+N    FEFT  N K + +LL  YP+ +K+ A++ LL LAQ+ NG +L ++
Sbjct: 26  LVTHHETPENNDDTYFEFTPENYKIINSLLKRYPDNYKKSAVLYLLHLAQKQNGNFLTLA 85

Query: 317 AMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463
           AM+KVA+IL +  + VYEVA FY+MF R  +GK  +Q+C TTPC L G+
Sbjct: 86  AMNKVAKILEMTNLNVYEVAAFYSMFNREKVGKIRLQICGTTPCLLCGA 134


>UniRef50_Q9VVF0 Cluster: CG6485-PA; n=2; Sophophora|Rep: CG6485-PA
           - Drosophila melanogaster (Fruit fly)
          Length = 238

 Score =  117 bits (281), Expect = 1e-25
 Identities = 55/102 (53%), Positives = 71/102 (69%)
 Frame = +2

Query: 161 EDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEI 340
           E   ++ FEF+  NQ+RV+ALLA YP+   +GA++PLLD+AQR  G WL ISA+  VAE 
Sbjct: 27  EIRKALKFEFSKDNQRRVKALLAWYPQAEWKGALLPLLDIAQRQQG-WLSISAVQAVAET 85

Query: 341 LNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
           + +  M  +E A FYTMF  +P GKY V VCT+TPC LRG D
Sbjct: 86  IKIDPMEAFEAAQFYTMFFMKPRGKYVVSVCTSTPCKLRGGD 127


>UniRef50_Q1GTK2 Cluster: NADH-quinone oxidoreductase, E subunit;
           n=8; Alphaproteobacteria|Rep: NADH-quinone
           oxidoreductase, E subunit - Sphingopyxis alaskensis
           (Sphingomonas alaskensis)
          Length = 222

 Score =  116 bits (279), Expect = 3e-25
 Identities = 55/101 (54%), Positives = 72/101 (71%), Gaps = 6/101 (5%)
 Frame = +2

Query: 182 FEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNG------GWLPISAMHKVAEIL 343
           F +TA N ++ +A++A YP G +R A++PLLDLAQR  G      GWLP+  +  VA  L
Sbjct: 20  FAWTAENAEKAKAVIARYPAGRQRSAVMPLLDLAQRQVGAETQTQGWLPVPVIEYVAAQL 79

Query: 344 NLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
           ++P +R YEVATFYTM+   P+G+YHVQVC TTPC LRGSD
Sbjct: 80  DMPFIRAYEVATFYTMYNLAPVGRYHVQVCGTTPCLLRGSD 120


>UniRef50_Q0BSK6 Cluster: NADH-quinone oxidoreductase chain E; n=5;
           Rhodospirillales|Rep: NADH-quinone oxidoreductase chain
           E - Granulobacter bethesdensis (strain ATCC BAA-1260 /
           CGDNIH1)
          Length = 227

 Score =  115 bits (276), Expect = 6e-25
 Identities = 51/100 (51%), Positives = 71/100 (71%), Gaps = 5/100 (5%)
 Frame = +2

Query: 182 FEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNG-----GWLPISAMHKVAEILN 346
           F F   +++R+E +LA YP   +  A++PLLDLAQR  G      W+P +AM ++A  L 
Sbjct: 20  FSFDVQSEQRIEIILAKYPPARRASAVMPLLDLAQRQMGRETGSAWIPRAAMDEIARRLG 79

Query: 347 LPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
           +  +RVYEVATFY M+  RP+G++H+Q+CTTTPCWLRGSD
Sbjct: 80  MAPIRVYEVATFYFMYNTRPVGRHHLQLCTTTPCWLRGSD 119


>UniRef50_A5NY87 Cluster: NADH-quinone oxidoreductase, E subunit;
           n=1; Methylobacterium sp. 4-46|Rep: NADH-quinone
           oxidoreductase, E subunit - Methylobacterium sp. 4-46
          Length = 394

 Score =  109 bits (262), Expect = 3e-23
 Identities = 52/105 (49%), Positives = 66/105 (62%)
 Frame = +2

Query: 149 RDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHK 328
           R  P +     F FT  N +  EA +A YPEG +  A+IPLL  AQ  NGGWLP  A+  
Sbjct: 5   RLAPAEQQPAAFAFTPENARWAEAQIAKYPEGRQASAVIPLLWRAQEQNGGWLPQKAIEA 64

Query: 329 VAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463
           VA+ L +P +RV EVATFYTMF   P+G+Y +QVC T PC + G+
Sbjct: 65  VADELGMPHIRVLEVATFYTMFALEPVGRYWIQVCGTVPCDVCGA 109


>UniRef50_A5CES4 Cluster: NADH dehydrogenase I chain E; n=1;
           Orientia tsutsugamushi Boryong|Rep: NADH dehydrogenase I
           chain E - Orientia tsutsugamushi (strain Boryong)
           (Rickettsia tsutsugamushi)
          Length = 192

 Score =  109 bits (262), Expect = 3e-23
 Identities = 49/96 (51%), Positives = 66/96 (68%), Gaps = 2/96 (2%)
 Frame = +2

Query: 185 EFTAPNQKRVEALLAI--YPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRM 358
           EF+  N+  V A   I  YP G +  A++ +LDLAQ  N  WL  S +  VA +L +P +
Sbjct: 8   EFSFSNETLVIAKKIINNYPAGKEASAVLAILDLAQNQNNNWLSNSCIEYVANLLKMPYI 67

Query: 359 RVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
           +VYE+A+FYTMF  +P+GKYH+Q+C TTPCWLRGSD
Sbjct: 68  KVYEIASFYTMFNLQPVGKYHIQICGTTPCWLRGSD 103


>UniRef50_Q0C8X0 Cluster: Putative uncharacterized protein; n=1;
           Aspergillus terreus NIH2624|Rep: Putative
           uncharacterized protein - Aspergillus terreus (strain
           NIH 2624)
          Length = 312

 Score =  101 bits (243), Expect = 6e-21
 Identities = 47/88 (53%), Positives = 65/88 (73%)
 Frame = +2

Query: 131 DSLFVHRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLP 310
           DSL VHR+ P +NPSIPF+F   N K ++ +L  YP  +K+ A++P+LDL QR + G+  
Sbjct: 134 DSLSVHRNKPNNNPSIPFKFNEQNLKLIDEILKRYPPQYKKAAVMPILDLGQRQH-GFTS 192

Query: 311 ISAMHKVAEILNLPRMRVYEVATFYTMF 394
           IS M++VA +L +P MRVYEVATFYTM+
Sbjct: 193 ISVMNEVARLLEMPPMRVYEVATFYTMY 220


>UniRef50_A7DLV4 Cluster: NADH-quinone oxidoreductase, E subunit;
           n=1; Methylobacterium extorquens PA1|Rep: NADH-quinone
           oxidoreductase, E subunit - Methylobacterium extorquens
           PA1
          Length = 412

 Score =  100 bits (240), Expect = 1e-20
 Identities = 46/89 (51%), Positives = 57/89 (64%)
 Frame = +2

Query: 182 FEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMR 361
           F FT  N       +A YPEG +  A+IPLL  AQ  NGGWLP  A+  VA+ L +P +R
Sbjct: 16  FAFTPENADWARGQIAKYPEGRQASAVIPLLWKAQEQNGGWLPQKAIEAVADELGMPHIR 75

Query: 362 VYEVATFYTMFIRRPIGKYHVQVCTTTPC 448
           V EVATFYTMF   P+G++ +QVC T PC
Sbjct: 76  VLEVATFYTMFALEPVGRFWIQVCGTVPC 104


>UniRef50_Q83BQ9 Cluster: NADH dehydrogenase I, E subunit; n=3;
           Coxiella burnetii|Rep: NADH dehydrogenase I, E subunit -
           Coxiella burnetii
          Length = 174

 Score = 97.9 bits (233), Expect = 1e-19
 Identities = 42/87 (48%), Positives = 59/87 (67%)
 Frame = +2

Query: 206 KRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFY 385
           K ++  LA YP   KR A++P L   Q+ N GWL  +AM+ +A+ L LPR+ VYEVATFY
Sbjct: 16  KEIDRWLAKYPTDQKRSAVVPALLFVQKQNNGWLSKAAMNALADYLQLPRIWVYEVATFY 75

Query: 386 TMFIRRPIGKYHVQVCTTTPCWLRGSD 466
            M+  +P+GK+ + +C   PC+LRGSD
Sbjct: 76  DMYNLKPMGKHKISICQNVPCFLRGSD 102


>UniRef50_A3UCV4 Cluster: ATP synthase subunit E; n=4;
           Alphaproteobacteria|Rep: ATP synthase subunit E -
           Oceanicaulis alexandrii HTCC2633
          Length = 346

 Score = 97.9 bits (233), Expect = 1e-19
 Identities = 47/95 (49%), Positives = 63/95 (66%)
 Frame = +2

Query: 182 FEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMR 361
           F F   ++ +V+  LA YPE  K  A+IPLL +AQ+ +  W+   AM ++A    +P +R
Sbjct: 14  FAFNEKSEAKVKFWLAKYPEERKASAVIPLLWIAQKQDN-WVSEPAMREIAARCGMPYIR 72

Query: 362 VYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
           VYEVATFYTMF     GK+ +QVC TTPCWLRG+D
Sbjct: 73  VYEVATFYTMFNLEQTGKHLIQVCGTTPCWLRGAD 107


>UniRef50_Q5FGV2 Cluster: NADH-quinone oxidoreductase chain E; n=5;
           canis group|Rep: NADH-quinone oxidoreductase chain E -
           Ehrlichia ruminantium (strain Gardel)
          Length = 183

 Score = 96.7 bits (230), Expect = 2e-19
 Identities = 45/95 (47%), Positives = 62/95 (65%)
 Frame = +2

Query: 182 FEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMR 361
           F+F   + K+    L  YP   K  A++PLL +AQ+  GG +PI+AM+ +A+ L++  + 
Sbjct: 18  FKFNKESLKQANDALNRYPSDRKSSAVMPLLHIAQKQCGGLIPIAAMNYIADFLDMKPIH 77

Query: 362 VYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
           VYEVA FY+M+     GKY VQVC TTPCWL GSD
Sbjct: 78  VYEVAKFYSMYNLSVTGKYLVQVCRTTPCWLCGSD 112


>UniRef50_Q8G1B3 Cluster: NADH dehydrogenase I, E subunit; n=9;
           Rhizobiales|Rep: NADH dehydrogenase I, E subunit -
           Brucella suis
          Length = 237

 Score = 95.9 bits (228), Expect = 4e-19
 Identities = 47/96 (48%), Positives = 64/96 (66%), Gaps = 1/96 (1%)
 Frame = +2

Query: 182 FEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMR 361
           F F A N+      +A YPEG ++ A+IPLL  AQ   G W+  +++  VA +LN+P +R
Sbjct: 16  FAFNAENEAWAHKTIAKYPEGRQQSAVIPLLMRAQEQEG-WVTKASIEYVAAMLNMPLIR 74

Query: 362 VYEVATFYTMFIRRPIG-KYHVQVCTTTPCWLRGSD 466
           V EVATFYT F  +P+G + H+QVC TTPC LRGS+
Sbjct: 75  VLEVATFYTQFQLKPVGSRAHIQVCGTTPCMLRGSE 110


>UniRef50_Q11VB6 Cluster: NADH dehydrogenase I chain E; n=2;
           Bacteroidetes|Rep: NADH dehydrogenase I chain E -
           Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
          Length = 177

 Score = 92.7 bits (220), Expect = 4e-18
 Identities = 39/93 (41%), Positives = 62/93 (66%)
 Frame = +2

Query: 182 FEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMR 361
           F+F+  + K+++ + A YPEG ++ A++P+L +AQ   GGWLP   M  VA +L++  + 
Sbjct: 8   FQFSEASLKKIQEMKARYPEGRQKSALLPVLHMAQDELGGWLPAPLMDYVASLLDITPIE 67

Query: 362 VYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRG 460
           VYEVA+FY+M+  +P+GK   + C T PC L G
Sbjct: 68  VYEVASFYSMYNLKPVGKCMFEFCQTGPCCLNG 100


>UniRef50_P56909 Cluster: NADH-quinone oxidoreductase subunit E 1;
           n=21; Rhizobiales|Rep: NADH-quinone oxidoreductase
           subunit E 1 - Rhizobium meliloti (Sinorhizobium
           meliloti)
          Length = 275

 Score = 91.9 bits (218), Expect = 6e-18
 Identities = 46/96 (47%), Positives = 64/96 (66%), Gaps = 1/96 (1%)
 Frame = +2

Query: 182 FEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMR 361
           F F+  N    EA +  YPEG ++ A+IPLL  AQ  +G W+  +A+  VA++L +  +R
Sbjct: 16  FAFSKENAAWAEATIKKYPEGREQSAVIPLLMRAQEQDG-WVTRAAIESVADMLGMAYIR 74

Query: 362 VYEVATFYTMFIRRPIG-KYHVQVCTTTPCWLRGSD 466
           V EVATFYT F  +P+G + HVQVC TTPC LRG++
Sbjct: 75  VLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAE 110


>UniRef50_A6H1R0 Cluster: NADH dehydrogenase I, E subunit; n=2;
           Bacteroidetes|Rep: NADH dehydrogenase I, E subunit -
           Flavobacterium psychrophilum (strain JIP02/86 / ATCC
           49511)
          Length = 176

 Score = 91.1 bits (216), Expect = 1e-17
 Identities = 40/86 (46%), Positives = 57/86 (66%)
 Frame = +2

Query: 209 RVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYT 388
           R+E L + YPE  ++ A++P+L   Q  +  WL I    KVAEIL++  + VYEV +FYT
Sbjct: 19  RIEELCSHYPEDKRKSALLPVLHEVQDAHENWLSIELQDKVAEILHIKPVEVYEVVSFYT 78

Query: 389 MFIRRPIGKYHVQVCTTTPCWLRGSD 466
           M+ RRPIGKY  + C T+PC L G++
Sbjct: 79  MYNRRPIGKYMFEFCQTSPCCLNGTE 104


>UniRef50_Q98KQ9 Cluster: NADH-ubiquinone dehydrogenase chain E 1;
           n=3; Bacteria|Rep: NADH-ubiquinone dehydrogenase chain E
           1 - Rhizobium loti (Mesorhizobium loti)
          Length = 424

 Score = 89.8 bits (213), Expect = 3e-17
 Identities = 42/98 (42%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
 Frame = +2

Query: 176 IPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPR 355
           + F F   N    +  +  YP+G ++ A+IPLL LAQ   G W+  +A+  ++++L +PR
Sbjct: 14  VSFAFNRANAAAAKQWIKKYPKGREQSAIIPLLMLAQEQEG-WVTKAAIETISDMLGMPR 72

Query: 356 MRVYEVATFYTMFIRRPIG-KYHVQVCTTTPCWLRGSD 466
           +R  EVATFYT +   P+G + H+QVC TTPC LRGS+
Sbjct: 73  IRGLEVATFYTQYQLNPVGTRAHIQVCGTTPCMLRGSE 110


>UniRef50_A3U1M2 Cluster: ATP synthase subunit E; n=9;
           Alphaproteobacteria|Rep: ATP synthase subunit E -
           Oceanicola batsensis HTCC2597
          Length = 460

 Score = 87.8 bits (208), Expect = 1e-16
 Identities = 48/109 (44%), Positives = 64/109 (58%), Gaps = 1/109 (0%)
 Frame = +2

Query: 143 VHRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAM 322
           +H+D PE      F FT  NQK  EA +  YPEG +  A+IPLL  AQ    GWL   A+
Sbjct: 5   LHKDQPES-----FAFTPENQKWAEAQMTKYPEGRQASAIIPLLWRAQEQE-GWLTRPAI 58

Query: 323 HKVAEILNLPRMRVYEVATFYTMFIRRPIGKY-HVQVCTTTPCWLRGSD 466
             +A +L++  +R  EVATFY MF   P+G   HVQ+C TT C + G++
Sbjct: 59  EHIAAMLDMAYIRALEVATFYFMFQLAPVGSVAHVQICGTTSCMICGAE 107


>UniRef50_A2F771 Cluster: Respiratory-chain NADH dehydrogenase 24 Kd
           subunit family protein; n=2; Trichomonas vaginalis|Rep:
           Respiratory-chain NADH dehydrogenase 24 Kd subunit
           family protein - Trichomonas vaginalis G3
          Length = 201

 Score = 85.4 bits (202), Expect = 6e-16
 Identities = 40/94 (42%), Positives = 60/94 (63%)
 Frame = +2

Query: 185 EFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRV 364
           +F   +Q +V+A+LA YP+ +KR A IPLL L QR NGG+L    +  +++I+ +   RV
Sbjct: 24  DFKFSDQSKVDAILAKYPKENKRAATIPLLHLGQRENGGYLTTGVLQAISKIVGVTAGRV 83

Query: 365 YEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
           +E A FY+MF  +P   + V+VC    C+L GSD
Sbjct: 84  HETACFYSMFRFQPPNNHIVEVCKGLSCYLTGSD 117


>UniRef50_P29914 Cluster: NADH-quinone oxidoreductase chain 2; n=22;
           Alphaproteobacteria|Rep: NADH-quinone oxidoreductase
           chain 2 - Paracoccus denitrificans
          Length = 239

 Score = 82.6 bits (195), Expect = 4e-15
 Identities = 41/96 (42%), Positives = 59/96 (61%), Gaps = 1/96 (1%)
 Frame = +2

Query: 182 FEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMR 361
           FEFT  N +   A +  YPEG ++ A+IP+L  AQ   G WL   A+   A++L +P +R
Sbjct: 13  FEFTPANLEWARAQMTKYPEGRQQSAIIPVLWRAQEQEG-WLSRPAIEYCADLLGMPYIR 71

Query: 362 VYEVATFYTMFIRRPIGKY-HVQVCTTTPCWLRGSD 466
             EVATFY MF  +P+G   H+Q+C TT C + G++
Sbjct: 72  ALEVATFYFMFQLQPVGSVAHIQICGTTTCMICGAE 107


>UniRef50_P56910 Cluster: NADH-quinone oxidoreductase subunit E 2;
           n=3; Rhizobiaceae|Rep: NADH-quinone oxidoreductase
           subunit E 2 - Rhizobium meliloti (Sinorhizobium
           meliloti)
          Length = 168

 Score = 78.6 bits (185), Expect = 6e-14
 Identities = 38/88 (43%), Positives = 60/88 (68%)
 Frame = +2

Query: 203 QKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATF 382
           ++ +EA  A YP+  +R A++P L +AQ+ +G  LP   + +VA+IL + R+ VYE+ATF
Sbjct: 4   REEIEAAAARYPD--RRSAIMPALMIAQKEHGH-LPGPVLEEVAQILGVERVWVYELATF 60

Query: 383 YTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
           YT+F   PIG++H+Q+C    C L GS+
Sbjct: 61  YTLFHTEPIGRFHLQLCDNVSCMLCGSE 88


>UniRef50_Q9PGJ1 Cluster: NADH-ubiquinone oxidoreductase, NQO2
           subunit; n=13; Gammaproteobacteria|Rep: NADH-ubiquinone
           oxidoreductase, NQO2 subunit - Xylella fastidiosa
          Length = 175

 Score = 78.2 bits (184), Expect = 8e-14
 Identities = 35/85 (41%), Positives = 52/85 (61%)
 Frame = +2

Query: 212 VEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTM 391
           ++  LA +P   KR A++  L  AQ  N GWL    +  VA+ L++P +  YEVATFY+M
Sbjct: 27  IDHWLAKFPADQKRSALLQGLYAAQEQNQGWLTDELIAAVAKYLDIPSVWAYEVATFYSM 86

Query: 392 FIRRPIGKYHVQVCTTTPCWLRGSD 466
           F  R +G+++V  CT   CWL G++
Sbjct: 87  FETRKVGRHNVAFCTNVSCWLNGAE 111


>UniRef50_Q0PQQ4 Cluster: NADH dehydrogenase I E subunit; n=1;
           Endoriftia persephone 'Hot96_1+Hot96_2'|Rep: NADH
           dehydrogenase I E subunit - Endoriftia persephone
           'Hot96_1+Hot96_2'
          Length = 123

 Score = 78.2 bits (184), Expect = 8e-14
 Identities = 36/104 (34%), Positives = 61/104 (58%)
 Frame = +2

Query: 155 TPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVA 334
           T E N  +   F++  ++ ++  +A YP   ++ A++  L + Q  NGGWL  + M  VA
Sbjct: 3   TTEANNKVEL-FSSEVREEIDRWVAKYPAEWRQSAVMAALRIVQDANGGWLTTALMDDVA 61

Query: 335 EILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
             L++  + VYEVATFY+M+  +P+GK+ + +CT   C +  SD
Sbjct: 62  AYLDMAPIAVYEVATFYSMYELKPVGKHKICICTNVSCMINNSD 105


>UniRef50_Q82TU7 Cluster: Respiratory-chain NADH dehydrogenase 24 Kd
           subunit; n=27; Proteobacteria|Rep: Respiratory-chain
           NADH dehydrogenase 24 Kd subunit - Nitrosomonas europaea
          Length = 162

 Score = 77.4 bits (182), Expect = 1e-13
 Identities = 35/87 (40%), Positives = 53/87 (60%)
 Frame = +2

Query: 206 KRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFY 385
           ++++  +A YP   K+ A++  L +AQ   G WL    M  +A+ L +P + VYEVATFY
Sbjct: 12  RKIDREVAKYPADRKQSAVMSALAIAQDEKG-WLATETMDFIADYLEMPAIAVYEVATFY 70

Query: 386 TMFIRRPIGKYHVQVCTTTPCWLRGSD 466
            M+  +P+GKY + VCT  PC L G +
Sbjct: 71  NMYNLKPVGKYKLTVCTNLPCALSGGN 97


>UniRef50_A1WXW3 Cluster: NADH-quinone oxidoreductase, E subunit;
           n=1; Halorhodospira halophila SL1|Rep: NADH-quinone
           oxidoreductase, E subunit - Halorhodospira halophila
           (strain DSM 244 / SL1) (Ectothiorhodospirahalophila
           (strain DSM 244 / SL1))
          Length = 170

 Score = 77.4 bits (182), Expect = 1e-13
 Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
 Frame = +2

Query: 194 APNQKRVEALLAIYPEGH--KRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVY 367
           A  ++R++  LA YP+    +  A+IP L + Q  NGGWL  S +   A+ + +PR   +
Sbjct: 13  ADQRRRIDHWLAKYPDDEQGRASAIIPALHILQDDNGGWLERSHVAAAADYIGMPRASAF 72

Query: 368 EVATFYTMF-IRRPIGKYHVQVCTTTPCWLRGSD 466
           EVATFY+MF +  P+G++ V  CT   C L G+D
Sbjct: 73  EVATFYSMFHLDEPVGRHKVNFCTNISCCLNGAD 106


>UniRef50_Q6MIR6 Cluster: NADH dehydrogenase I chain E; n=1;
           Bdellovibrio bacteriovorus|Rep: NADH dehydrogenase I
           chain E - Bdellovibrio bacteriovorus
          Length = 159

 Score = 76.2 bits (179), Expect = 3e-13
 Identities = 36/93 (38%), Positives = 57/93 (61%)
 Frame = +2

Query: 182 FEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMR 361
           F+ +      V++ LA Y    K  A+IP L +AQ+ N G++    +  +++++++P  R
Sbjct: 4   FKLSDSGLAAVKSELARYEA--KESAIIPSLYIAQKENNGFITPEIIRTLSQVMDIPEAR 61

Query: 362 VYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRG 460
           + EV  FYTMF ++P+GKYHVQVCT   C L G
Sbjct: 62  INEVFKFYTMFNQKPVGKYHVQVCTNISCALEG 94


>UniRef50_A5UZH6 Cluster: NADH-quinone oxidoreductase, E subunit;
           n=5; Chloroflexi (class)|Rep: NADH-quinone
           oxidoreductase, E subunit - Roseiflexus sp. RS-1
          Length = 174

 Score = 75.4 bits (177), Expect = 6e-13
 Identities = 37/85 (43%), Positives = 58/85 (68%)
 Frame = +2

Query: 212 VEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTM 391
           +EA++A YP  HK  A++PLL +AQ    G+L  +AM +VAE+L++P   V+EVA FY++
Sbjct: 11  IEAIIARYP--HKPSAVLPLLFIAQ-DEYGYLTEAAMREVAELLDMPPTDVFEVAGFYSL 67

Query: 392 FIRRPIGKYHVQVCTTTPCWLRGSD 466
              +P+GK+ +QVC   PC   G++
Sbjct: 68  LYEQPVGKWVLQVCDDVPCAFCGAE 92


>UniRef50_Q02CT9 Cluster: NADH-quinone oxidoreductase, E subunit;
           n=1; Solibacter usitatus Ellin6076|Rep: NADH-quinone
           oxidoreductase, E subunit - Solibacter usitatus (strain
           Ellin6076)
          Length = 160

 Score = 74.1 bits (174), Expect = 1e-12
 Identities = 38/88 (43%), Positives = 52/88 (59%)
 Frame = +2

Query: 203 QKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATF 382
           + R E LL  YP G +R AMIP+L  AQ    G +    + +VA  + +  ++V EV T+
Sbjct: 8   EARFEKLLTSYPPGRQRSAMIPMLMYAQ-DELGCVSDELIAEVARRIGVTPLQVNEVLTY 66

Query: 383 YTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
           Y+M  R+P+GKYHVQVCT   C L   D
Sbjct: 67  YSMLHRKPLGKYHVQVCTNISCLLHDGD 94


>UniRef50_A6FCN2 Cluster: NuoE2 NADH I CHAIN E; n=1; Moritella sp.
           PE36|Rep: NuoE2 NADH I CHAIN E - Moritella sp. PE36
          Length = 207

 Score = 74.1 bits (174), Expect = 1e-12
 Identities = 39/93 (41%), Positives = 61/93 (65%)
 Frame = +2

Query: 185 EFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRV 364
           E TAP    +  ++  YP   +R A++P L LAQ    G+L  +A   +AEIL++P + V
Sbjct: 13  ELTAP----IADIVKCYPT--QRSAIMPALYLAQ-DTYGFLDETAYRAIAEILDIPEIWV 65

Query: 365 YEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463
           +E+A+FYT++  + IGKY++Q+CT  PC LRG+
Sbjct: 66  FELASFYTLYKNKKIGKYNLQLCTNVPCMLRGA 98


>UniRef50_Q67P18 Cluster: NADH dehydrogenase I subunit E; n=1;
           Symbiobacterium thermophilum|Rep: NADH dehydrogenase I
           subunit E - Symbiobacterium thermophilum
          Length = 274

 Score = 73.3 bits (172), Expect = 2e-12
 Identities = 38/82 (46%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
 Frame = +2

Query: 212 VEALLAIYPEGHKRGAMIPLLDLAQRXNGG-WLPISAMHKVAEILNLPRMRVYEVATFYT 388
           VEA+L  YPEG +R A++PLL LA R   G ++  S +  VAEI  +    V  V +FYT
Sbjct: 18  VEAILRRYPEGRERSAILPLLHLAMREREGRYIAQSDIEAVAEICGVAPSYVQSVCSFYT 77

Query: 389 MFIRRPIGKYHVQVCTTTPCWL 454
           MF R+P+GKY + VC    C L
Sbjct: 78  MFRRQPVGKYLITVCGNMACHL 99


>UniRef50_A7CUG1 Cluster: NADH-quinone oxidoreductase, E subunit;
           n=1; Opitutaceae bacterium TAV2|Rep: NADH-quinone
           oxidoreductase, E subunit - Opitutaceae bacterium TAV2
          Length = 163

 Score = 71.7 bits (168), Expect = 7e-12
 Identities = 36/85 (42%), Positives = 53/85 (62%)
 Frame = +2

Query: 206 KRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFY 385
           +R++ ++  YP   KR A +PLL L Q  + G++   AM  +A+ L + R+ V EV TFY
Sbjct: 9   QRIDEVITHYPV--KRSATLPLLHLIQE-DAGYISDEAMEWIADKLGIERIHVLEVVTFY 65

Query: 386 TMFIRRPIGKYHVQVCTTTPCWLRG 460
            MF R+PIG+ H++VC T  C L G
Sbjct: 66  PMFRRKPIGRRHIKVCRTLSCALMG 90


>UniRef50_A4SXP9 Cluster: NADH-quinone oxidoreductase, E subunit;
           n=51; Burkholderiales|Rep: NADH-quinone oxidoreductase,
           E subunit - Polynucleobacter sp. QLW-P1DMWA-1
          Length = 168

 Score = 70.9 bits (166), Expect = 1e-11
 Identities = 33/77 (42%), Positives = 48/77 (62%)
 Frame = +2

Query: 224 LAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRR 403
           +A YP  HK+ A++  L +A +   GW+    +  VA+IL +P + V EVATFY M+  +
Sbjct: 19  IAKYPAEHKQSAVMACL-IAAQTEVGWVSPEVIEAVAQILEMPTIAVDEVATFYNMYNTK 77

Query: 404 PIGKYHVQVCTTTPCWL 454
           PIGKY + +CT  PC L
Sbjct: 78  PIGKYKLVICTNLPCQL 94


>UniRef50_Q2JFL6 Cluster: NADH-quinone oxidoreductase, E subunit;
           n=5; Actinomycetales|Rep: NADH-quinone oxidoreductase, E
           subunit - Frankia sp. (strain CcI3)
          Length = 262

 Score = 69.7 bits (163), Expect = 3e-11
 Identities = 35/93 (37%), Positives = 49/93 (52%)
 Frame = +2

Query: 188 FTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVY 367
           F+       + ++A YP G  R A++PLL L Q   G  +    +   A++L + R  V 
Sbjct: 3   FSPETHAAAQEIIARYPAGRSRSALLPLLHLVQAEQG-CVTAQGVAFCADVLGITRAEVG 61

Query: 368 EVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
            VATFYTM+ R P+G Y V VCT   C L G +
Sbjct: 62  AVATFYTMYKRHPVGDYLVSVCTNLSCALLGGE 94


>UniRef50_Q092T1 Cluster: NADH-ubiquinone oxidoreductase 24 kDa
           subunit; n=2; Cystobacterineae|Rep: NADH-ubiquinone
           oxidoreductase 24 kDa subunit - Stigmatella aurantiaca
           DW4/3-1
          Length = 162

 Score = 69.3 bits (162), Expect = 4e-11
 Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
 Frame = +2

Query: 188 FTAPNQKRVEA----LLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPR 355
           FT   QK+ +A    +L+ YP   K   M+P L L Q   G W P   +  VA+ L +  
Sbjct: 6   FTPEEQKKFDAGISEILSHYPPDRKSAGMLPALRLLQDLKG-WCPPEGIRLVAKNLEVTP 64

Query: 356 MRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
            R YEVA+FY M+  +  GKY + VCT   C LRG++
Sbjct: 65  ERAYEVASFYVMYHLKKPGKYTIDVCTNLSCSLRGAE 101


>UniRef50_Q6MDR2 Cluster: Putative NADH-ubiquinone oxidoreductase
           chain E; n=1; Candidatus Protochlamydia amoebophila
           UWE25|Rep: Putative NADH-ubiquinone oxidoreductase chain
           E - Protochlamydia amoebophila (strain UWE25)
          Length = 159

 Score = 68.1 bits (159), Expect = 9e-11
 Identities = 33/79 (41%), Positives = 47/79 (59%)
 Frame = +2

Query: 230 IYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPI 409
           +YP  +KR A+IP L LAQ   G +LPI   +++A + +L    V  + TFY MF   P+
Sbjct: 4   LYP--NKRSALIPALHLAQAEKG-YLPIEVQNELAFLFDLEPSEVNSIVTFYDMFFEEPV 60

Query: 410 GKYHVQVCTTTPCWLRGSD 466
           GK+ + VC    C LRG+D
Sbjct: 61  GKHVIHVCKNISCMLRGAD 79


>UniRef50_Q2LQE7 Cluster: NADH-quinone oxidoreductase chain F; n=1;
           Syntrophus aciditrophicus SB|Rep: NADH-quinone
           oxidoreductase chain F - Syntrophus aciditrophicus
           (strain SB)
          Length = 574

 Score = 66.9 bits (156), Expect = 2e-10
 Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
 Frame = +2

Query: 212 VEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTM 391
           +  LL  YPE  K+ A++P L LAQ+ N   L    +  VAE++++P  + Y +AT+Y+M
Sbjct: 10  IHRLLGRYPE--KQSALMPALMLAQKENANRLDQDDIRTVAELVDVPFGKAYGLATYYSM 67

Query: 392 F-IRRPIGKYHVQVCTTTPCWLRGS 463
           + + +P+G+YH+QV T  P  L G+
Sbjct: 68  YNVEKPVGRYHLQVDTNIPATLMGA 92


>UniRef50_A3THI9 Cluster: ATP synthase subunit E; n=3;
           Actinomycetales|Rep: ATP synthase subunit E - Janibacter
           sp. HTCC2649
          Length = 417

 Score = 66.1 bits (154), Expect = 4e-10
 Identities = 37/84 (44%), Positives = 50/84 (59%)
 Frame = +2

Query: 215 EALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMF 394
           E ++A YP+  KR A++PLL L Q  +G ++    +   AE+L L R  V  VATFYT +
Sbjct: 36  ELVVAKYPQ--KRSALLPLLHLVQSVDG-YVTGRGIDFCAEVLELSRAEVSGVATFYTQY 92

Query: 395 IRRPIGKYHVQVCTTTPCWLRGSD 466
            R P G+Y V VCT T C + G D
Sbjct: 93  KRHPNGEYTVGVCTNTLCAIMGGD 116


>UniRef50_A1AVR6 Cluster: NADH-quinone oxidoreductase, E subunit;
           n=2; sulfur-oxidizing symbionts|Rep: NADH-quinone
           oxidoreductase, E subunit - Ruthia magnifica subsp.
           Calyptogena magnifica
          Length = 157

 Score = 65.7 bits (153), Expect = 5e-10
 Identities = 30/88 (34%), Positives = 50/88 (56%)
 Frame = +2

Query: 203 QKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATF 382
           +K+++A +A YP+  K  A++  L + Q  N   L    +  VA+ L++P + V EVATF
Sbjct: 7   KKQIDAWIAKYPKDRKSSAVMQTLKIIQAENENKLSADTIQAVADYLDMPDIAVQEVATF 66

Query: 383 YTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
           Y  +  + +GKY ++ C    C L G+D
Sbjct: 67  YENYNHKKVGKYVIRFCHNISCMLNGAD 94


>UniRef50_Q0EZQ5 Cluster: NADH dehydrogenase I chain E; n=1;
           Mariprofundus ferrooxydans PV-1|Rep: NADH dehydrogenase
           I chain E - Mariprofundus ferrooxydans PV-1
          Length = 170

 Score = 64.5 bits (150), Expect = 1e-09
 Identities = 34/93 (36%), Positives = 53/93 (56%)
 Frame = +2

Query: 188 FTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVY 367
           F+      +  L+  YP    + A++P+L +AQ  + G+L +     VA++L L  M+V 
Sbjct: 12  FSEARLAEIAELVKRYPGA--QSALMPVLYMAQE-DFGYLSMDVQQHVADVLGLRLMQVR 68

Query: 368 EVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
           EV TFYTMF  +P G Y ++VCT   C L G++
Sbjct: 69  EVVTFYTMFREKPCGTYLLEVCTNAGCMLNGAN 101


>UniRef50_P0AFD3 Cluster: NADH-quinone oxidoreductase subunit E;
           n=66; Gammaproteobacteria|Rep: NADH-quinone
           oxidoreductase subunit E - Shigella flexneri
          Length = 166

 Score = 64.5 bits (150), Expect = 1e-09
 Identities = 30/93 (32%), Positives = 53/93 (56%)
 Frame = +2

Query: 182 FEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMR 361
           FE +A  ++ +E  +  Y +   R A I  L + Q+  G W+P  A+H +A++L +P   
Sbjct: 12  FELSAAEREAIEHEMHHYED--PRAASIEALKIVQKQRG-WVPDGAIHAIADVLGIPASD 68

Query: 362 VYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRG 460
           V  VATFY+   R+P+G++ ++ C +  C + G
Sbjct: 69  VEGVATFYSQIFRQPVGRHVIRYCDSVVCHING 101


>UniRef50_Q0AZ71 Cluster: NADH:ubiquinone oxidoreductase 24 kD
           subunit-like protein precursor; n=4; Clostridiales|Rep:
           NADH:ubiquinone oxidoreductase 24 kD subunit-like
           protein precursor - Syntrophomonas wolfei subsp. wolfei
           (strain Goettingen)
          Length = 182

 Score = 64.1 bits (149), Expect = 1e-09
 Identities = 31/82 (37%), Positives = 48/82 (58%)
 Frame = +2

Query: 221 LLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIR 400
           L  I  + H++G++I +L  AQ   G +LP+S +  +A  L +   +VY +ATFYT F  
Sbjct: 26  LKIIEEKRHEKGSLIAILQQAQDIYG-YLPLSVLKCIARELGIKPAKVYGIATFYTQFRL 84

Query: 401 RPIGKYHVQVCTTTPCWLRGSD 466
           +P GKY +  C  T C + GS+
Sbjct: 85  QPAGKYQIMFCQGTACHVNGSE 106


>UniRef50_A7HII1 Cluster: NADH-quinone oxidoreductase, E subunit;
           n=2; Anaeromyxobacter|Rep: NADH-quinone oxidoreductase,
           E subunit - Anaeromyxobacter sp. Fw109-5
          Length = 188

 Score = 63.3 bits (147), Expect = 3e-09
 Identities = 36/97 (37%), Positives = 48/97 (49%)
 Frame = +2

Query: 176 IPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPR 355
           +P E      + +  +L  YP   K  AM+P L + Q   G +L  +     A+ L    
Sbjct: 30  LPREKVEHFDRDLAEVLRRYPPDRKAAAMLPALRIGQEIFG-YLTPAVQRLAADRLGTSP 88

Query: 356 MRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
            R  EVATFY MF  RPIG++ V+VCT   C L G D
Sbjct: 89  ARAEEVATFYVMFNTRPIGRHLVEVCTNVSCCLTGGD 125


>UniRef50_Q6A6G2 Cluster: NADH dehydrogenase I chain E; n=1;
           Propionibacterium acnes|Rep: NADH dehydrogenase I chain
           E - Propionibacterium acnes
          Length = 261

 Score = 62.9 bits (146), Expect = 3e-09
 Identities = 30/78 (38%), Positives = 47/78 (60%)
 Frame = +2

Query: 233 YPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIG 412
           YP+   R A++P+L L Q  +G   P+  +   AE+L +   +V  VATFYTM+ + P G
Sbjct: 51  YPDS--RSALLPILHLVQSVDGRISPVG-IETAAEVLGITTAQVSGVATFYTMYKKHPAG 107

Query: 413 KYHVQVCTTTPCWLRGSD 466
           ++H+ VCTT  C + G +
Sbjct: 108 QHHIGVCTTALCAVMGGE 125


>UniRef50_A7HLQ9 Cluster: NADH-quinone oxidoreductase, E subunit;
           n=3; Thermotogaceae|Rep: NADH-quinone oxidoreductase, E
           subunit - Fervidobacterium nodosum Rt17-B1
          Length = 161

 Score = 62.9 bits (146), Expect = 3e-09
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
 Frame = +2

Query: 248 KRGAMIPLLDLAQ-RXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHV 424
           +R  ++ LL   Q      ++P      +AE LN+P  +VYEV TFYTMF  +P GKY +
Sbjct: 20  ERDMLVYLLHRVQDHYQSHYIPPEVGEMIAEELNIPSSKVYEVLTFYTMFSTKPRGKYII 79

Query: 425 QVCTTTPCWLRG 460
           +VCT+ PC + G
Sbjct: 80  RVCTSLPCHVPG 91


>UniRef50_Q746S5 Cluster: NADH dehydrogenase I, E subunit; n=4;
           Desulfuromonadales|Rep: NADH dehydrogenase I, E subunit
           - Geobacter sulfurreducens
          Length = 162

 Score = 61.7 bits (143), Expect = 8e-09
 Identities = 29/72 (40%), Positives = 43/72 (59%)
 Frame = +2

Query: 251 RGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQV 430
           R A + ++   QR + GWL   A+ + AE+L L  ++V E+ATFY M  RRP+GK  + V
Sbjct: 21  REAAVDVMKALQR-HYGWLTDEAVGEAAELLGLTPLQVEELATFYEMIYRRPVGKRVIHV 79

Query: 431 CTTTPCWLRGSD 466
           C +  CW  G +
Sbjct: 80  CDSISCWALGGE 91


>UniRef50_Q2LYE8 Cluster: NADH:ubiquinone oxidoreductase 24 kD
           subunit NuoE; n=1; Syntrophus aciditrophicus SB|Rep:
           NADH:ubiquinone oxidoreductase 24 kD subunit NuoE -
           Syntrophus aciditrophicus (strain SB)
          Length = 173

 Score = 61.7 bits (143), Expect = 8e-09
 Identities = 30/84 (35%), Positives = 51/84 (60%)
 Frame = +2

Query: 209 RVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYT 388
           ++  +++ Y +G K  A+  L DL +     +LP  A+  V++ L +P  R+YE+ATFY 
Sbjct: 22  KIREIISKY-DGEKSAAVAVLQDLQEEFR--YLPKEALTIVSDELQVPLSRIYEIATFYN 78

Query: 389 MFIRRPIGKYHVQVCTTTPCWLRG 460
           +F  +P GKY ++VC  T C ++G
Sbjct: 79  VFSLKPRGKYLIEVCAGTACHVQG 102


>UniRef50_A3ERJ3 Cluster: NADH ubiquinone oxidoreductase 24 kD
           subunit; n=2; Leptospirillum|Rep: NADH ubiquinone
           oxidoreductase 24 kD subunit - Leptospirillum sp. Group
           II UBA
          Length = 168

 Score = 61.7 bits (143), Expect = 8e-09
 Identities = 26/73 (35%), Positives = 46/73 (63%)
 Frame = +2

Query: 245 HKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHV 424
           ++ GA++ +L   Q   G ++P  A+  V EIL +P+ ++Y V TFY+ F + P GK+ +
Sbjct: 23  NREGAVVQILQKVQEKYG-YVPADALEFVGEILEIPKSKMYGVLTFYSQFYQEPRGKFVL 81

Query: 425 QVCTTTPCWLRGS 463
           ++C  T C +RG+
Sbjct: 82  KICVGTACHVRGA 94


>UniRef50_Q5JIQ1 Cluster: NADH:ubiquinone oxidoreductase, subunit E;
           n=2; cellular organisms|Rep: NADH:ubiquinone
           oxidoreductase, subunit E - Pyrococcus kodakaraensis
           (Thermococcus kodakaraensis)
          Length = 154

 Score = 61.7 bits (143), Expect = 8e-09
 Identities = 30/69 (43%), Positives = 41/69 (59%)
 Frame = +2

Query: 257 AMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCT 436
           ++IPLL   Q    G+LP   + ++A  L +P  RVY VATFY  F   P+GKY V+VC 
Sbjct: 17  SLIPLLQRTQE-RFGYLPREVLEEIANYLGIPLSRVYGVATFYAQFRFEPLGKYVVKVCH 75

Query: 437 TTPCWLRGS 463
            T C + G+
Sbjct: 76  GTACHVNGA 84


>UniRef50_Q9WXM7 Cluster: NADP-reducing hydrogenase, subunit A; n=4;
           Thermotogaceae|Rep: NADP-reducing hydrogenase, subunit A
           - Thermotoga maritima
          Length = 176

 Score = 61.3 bits (142), Expect = 1e-08
 Identities = 27/73 (36%), Positives = 46/73 (63%)
 Frame = +2

Query: 248 KRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQ 427
           K+ A+I +L  AQ   G +LP   +  +++ L++P  +VY V TFY  F  +P GK+ ++
Sbjct: 38  KKDALIQVLHKAQELFG-YLPADVLEYISDKLDVPLSKVYGVVTFYNFFSTKPKGKHQIK 96

Query: 428 VCTTTPCWLRGSD 466
           VC  T C+++G+D
Sbjct: 97  VCLGTACYVKGAD 109


>UniRef50_Q8ABI7 Cluster: NADH-ubiquinone oxidoreductase subunit;
           n=3; Bacteroides|Rep: NADH-ubiquinone oxidoreductase
           subunit - Bacteroides thetaiotaomicron
          Length = 158

 Score = 61.3 bits (142), Expect = 1e-08
 Identities = 30/75 (40%), Positives = 43/75 (57%)
 Frame = +2

Query: 242 GHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYH 421
           G+  G +I +L  AQ  +G +LP      +A  L +P  +VY V TFYT F   P GK+ 
Sbjct: 22  GNNAGELINILHEAQHLHG-YLPEEMQRIIASKLRIPVSKVYGVVTFYTFFTMTPKGKHP 80

Query: 422 VQVCTTTPCWLRGSD 466
           + VC  T C++RGS+
Sbjct: 81  ISVCMGTACYVRGSE 95


>UniRef50_Q3ZXM4 Cluster: Hydrogenase subunit HymA; n=13; cellular
           organisms|Rep: Hydrogenase subunit HymA -
           Dehalococcoides sp. (strain CBDB1)
          Length = 161

 Score = 61.3 bits (142), Expect = 1e-08
 Identities = 30/65 (46%), Positives = 42/65 (64%)
 Frame = +2

Query: 269 LLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPC 448
           LL + +  N  WLP  A++KV++ LN+P  RVY VATFY +F   P GK++V VC  T C
Sbjct: 35  LLKIQKEYN--WLPKEALYKVSQTLNVPVNRVYHVATFYKLFSVIPKGKHNVSVCVGTAC 92

Query: 449 WLRGS 463
            + G+
Sbjct: 93  HVFGA 97


>UniRef50_A6PRE1 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
           subunit; n=1; Victivallis vadensis ATCC BAA-548|Rep:
           NADH dehydrogenase (Ubiquinone), 24 kDa subunit -
           Victivallis vadensis ATCC BAA-548
          Length = 176

 Score = 61.3 bits (142), Expect = 1e-08
 Identities = 30/72 (41%), Positives = 45/72 (62%)
 Frame = +2

Query: 248 KRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQ 427
           +RG++I +L  AQ   G +L       VA  LN+ R  VY V +FY+ FI +PIG+Y + 
Sbjct: 41  RRGSLIQILHRAQHLFG-YLSEEVQSFVAARLNISRAEVYGVISFYSYFIDQPIGRYKIN 99

Query: 428 VCTTTPCWLRGS 463
           VCT T C+++G+
Sbjct: 100 VCTGTACFVKGA 111


>UniRef50_A4J528 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
           subunit; n=1; Desulfotomaculum reducens MI-1|Rep: NADH
           dehydrogenase (Ubiquinone), 24 kDa subunit -
           Desulfotomaculum reducens MI-1
          Length = 158

 Score = 61.3 bits (142), Expect = 1e-08
 Identities = 31/88 (35%), Positives = 53/88 (60%)
 Frame = +2

Query: 200 NQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVAT 379
           NQ +++AL A Y +G+  G ++ +  + +  + G+LP   + + AE L +P   VY VAT
Sbjct: 10  NQSKLDALFAQY-KGNPNGLIVVMAAIQE--SQGYLPKDLLVRTAEELGVPLSDVYGVAT 66

Query: 380 FYTMFIRRPIGKYHVQVCTTTPCWLRGS 463
           FY  F  RP G++ V +C  T C+++G+
Sbjct: 67  FYAAFSLRPRGRHSVNLCLGTACYVKGA 94


>UniRef50_P65574 Cluster: NADH-quinone oxidoreductase subunit E;
           n=23; Actinomycetales|Rep: NADH-quinone oxidoreductase
           subunit E - Mycobacterium bovis
          Length = 252

 Score = 60.5 bits (140), Expect = 2e-08
 Identities = 36/98 (36%), Positives = 54/98 (55%)
 Frame = +2

Query: 173 SIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLP 352
           S P +  A  +   + ++  YP+  +R A++PLL L Q  +  +L  + +   A+ L L 
Sbjct: 31  SYPPDVLARLEVDAKEIIGRYPD--RRSALLPLLHLVQGEDS-YLTPAGLRFCADQLGLT 87

Query: 353 RMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
              V  VA+FYTM+ RRP G+Y V VCT T C + G D
Sbjct: 88  GAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGD 125


>UniRef50_Q608Y0 Cluster: NADH dehydrogenase I, E subunit; n=5;
           Bacteria|Rep: NADH dehydrogenase I, E subunit -
           Methylococcus capsulatus
          Length = 157

 Score = 59.3 bits (137), Expect = 4e-08
 Identities = 23/74 (31%), Positives = 42/74 (56%)
 Frame = +2

Query: 245 HKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHV 424
           H   A I  L++ QR +G W+    + ++AE+L +    +  +ATFY +  RRP+G+  +
Sbjct: 20  HPSAAAIEALNIVQRSHG-WISDELLQEIAELLGMSPAELDSIATFYNLIYRRPVGRRVI 78

Query: 425 QVCTTTPCWLRGSD 466
             C +  CW+ G++
Sbjct: 79  HYCNSVSCWMLGAE 92


>UniRef50_A4J9N9 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
           subunit; n=11; Bacteria|Rep: NADH dehydrogenase
           (Ubiquinone), 24 kDa subunit - Desulfotomaculum reducens
           MI-1
          Length = 177

 Score = 59.3 bits (137), Expect = 4e-08
 Identities = 34/96 (35%), Positives = 49/96 (51%)
 Frame = +2

Query: 179 PFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRM 358
           P E   P +K  E    I      +GA+I +L  AQ   G +LP      +A  L +P  
Sbjct: 12  PVEQEFPKEKYDELESFINSLETTKGALIEILHKAQHIFG-YLPRDVQLFIARKLGIPGA 70

Query: 359 RVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
            VY V +FY+ F  +P GK+ + VC  T C++RG+D
Sbjct: 71  EVYGVVSFYSYFTTKPSGKHTISVCMGTACFVRGAD 106


>UniRef50_Q3A640 Cluster: NADH:ubiquinone oxidoreductase 24 kD
           subunit; n=1; Pelobacter carbinolicus DSM 2380|Rep:
           NADH:ubiquinone oxidoreductase 24 kD subunit -
           Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
          Length = 159

 Score = 58.4 bits (135), Expect = 7e-08
 Identities = 32/94 (34%), Positives = 51/94 (54%)
 Frame = +2

Query: 185 EFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRV 364
           EFT      V+ L+  Y   H  G +IPLL+  Q   G +LP+S    ++E  ++   R+
Sbjct: 6   EFTKEQIDEVDGLIDRYG-AHPSG-LIPLLEKVQELLG-YLPLSIQEYISEKTHISPNRI 62

Query: 365 YEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
           Y V TFY+ F      ++ VQ+C  T C+++G+D
Sbjct: 63  YGVVTFYSFFTMEARARHRVQLCLGTACYVKGAD 96


>UniRef50_Q1EVZ9 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
           subunit; n=1; Clostridium oremlandii OhILAs|Rep: NADH
           dehydrogenase (Ubiquinone), 24 kDa subunit - Clostridium
           oremlandii OhILAs
          Length = 166

 Score = 58.0 bits (134), Expect = 1e-07
 Identities = 31/88 (35%), Positives = 51/88 (57%)
 Frame = +2

Query: 200 NQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVAT 379
           N   ++A  A+       GA+IP L   Q   G +LP  A+  V+E L++P  ++Y VA+
Sbjct: 15  NSTMLKAKEALQDIKGTEGALIPALHKIQSIYG-YLPEEALILVSEELDIPITQIYGVAS 73

Query: 380 FYTMFIRRPIGKYHVQVCTTTPCWLRGS 463
           FY++F   P G++ + VC  T C+++GS
Sbjct: 74  FYSLFSLEPKGQHVISVCLGTACYVKGS 101


>UniRef50_A0UV12 Cluster: NADH-quinone oxidoreductase, E subunit;
           n=8; Bacteria|Rep: NADH-quinone oxidoreductase, E
           subunit - Clostridium cellulolyticum H10
          Length = 163

 Score = 58.0 bits (134), Expect = 1e-07
 Identities = 26/71 (36%), Positives = 42/71 (59%)
 Frame = +2

Query: 251 RGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQV 430
           RGA+IP+L   Q   G +L    + +++E LN+    +Y V TFYT F   P G++ + +
Sbjct: 29  RGALIPVLHEVQEVYG-YLSEDVLKEISEKLNVSLAEIYGVVTFYTQFSLNPKGRFKINI 87

Query: 431 CTTTPCWLRGS 463
           C  T C+++GS
Sbjct: 88  CMGTACYVKGS 98


>UniRef50_O27591 Cluster: NADP-reducing hydrogenase, subunit A; n=1;
           Methanothermobacter thermautotrophicus str. Delta H|Rep:
           NADP-reducing hydrogenase, subunit A - Methanobacterium
           thermoautotrophicum
          Length = 149

 Score = 58.0 bits (134), Expect = 1e-07
 Identities = 30/75 (40%), Positives = 43/75 (57%)
 Frame = +2

Query: 242 GHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYH 421
           GHK   +IP+L   Q   G +LP  A+ +VA    + R  +Y VATFY  F  +P G+ H
Sbjct: 14  GHK-SEIIPILQDIQDAYG-YLPEDALEEVASFTGVSRAHLYGVATFYAQFRFKPRGRKH 71

Query: 422 VQVCTTTPCWLRGSD 466
           + VCT T C + G++
Sbjct: 72  IMVCTGTACHVSGAE 86


>UniRef50_O13691 Cluster: Probable NADH-ubiquinone oxidoreductase 24
           kDa subunit, mitochondrial precursor; n=1;
           Schizosaccharomyces pombe|Rep: Probable NADH-ubiquinone
           oxidoreductase 24 kDa subunit, mitochondrial precursor -
           Schizosaccharomyces pombe (Fission yeast)
          Length = 162

 Score = 58.0 bits (134), Expect = 1e-07
 Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
 Frame = +2

Query: 179 PFEFTAP-NQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPR 355
           P  F  P N +  +A+LA YP   +  A++PLLDLAQR +G W+P +AM+++A +  +  
Sbjct: 3   PIRFFKPENLQLAKAILARYPLRFQSAALVPLLDLAQRQHGTWIPPTAMYEIASLAGVSI 62

Query: 356 MRVYEVATFY-TMFIRRPIGKYHVQVCTTTPC 448
             V+ +   Y   F  RP  K  V++C +  C
Sbjct: 63  DYVHSLILAYPNDFFWRP-KKPRVRICNSWMC 93


>UniRef50_Q1PYY2 Cluster: Similar to nuoE subunit of the
           NADH:ubiquinone oxidoreductase; n=2; Candidatus Kuenenia
           stuttgartiensis|Rep: Similar to nuoE subunit of the
           NADH:ubiquinone oxidoreductase - Candidatus Kuenenia
           stuttgartiensis
          Length = 162

 Score = 57.2 bits (132), Expect = 2e-07
 Identities = 26/68 (38%), Positives = 44/68 (64%)
 Frame = +2

Query: 260 MIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTT 439
           +IP+L   Q   G +LP++AM +V+   ++P  R+Y V TFY+ F + P GK+ V++C  
Sbjct: 33  LIPILQEMQEEYG-YLPLTAMEEVSVRTDIPLSRIYGVVTFYSQFSQVPRGKHTVRLCAG 91

Query: 440 TPCWLRGS 463
           T C ++G+
Sbjct: 92  TACHIKGA 99


>UniRef50_Q67JG1 Cluster: Putative iron hydrogenase small subunit
           gamma; n=3; Firmicutes|Rep: Putative iron hydrogenase
           small subunit gamma - Symbiobacterium thermophilum
          Length = 186

 Score = 56.8 bits (131), Expect = 2e-07
 Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
 Frame = +2

Query: 197 PNQKRVEALLAIYPEGHKRGA-MIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEV 373
           P+  R   L A   +G      +I +L  AQ   G +LP      VA  L++P   VY V
Sbjct: 12  PDDPRFAELDAFIQDGRSSADHLIAVLHKAQEIFG-FLPEEVQRHVAAALHVPPSEVYGV 70

Query: 374 ATFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463
            TFY  F   P+GKY + VC  T C+++G+
Sbjct: 71  VTFYNYFTLTPVGKYPINVCMGTACYVQGA 100


>UniRef50_A5FSK9 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
           subunit; n=3; Dehalococcoides|Rep: NADH dehydrogenase
           (Ubiquinone), 24 kDa subunit - Dehalococcoides sp. BAV1
          Length = 155

 Score = 56.4 bits (130), Expect = 3e-07
 Identities = 24/79 (30%), Positives = 47/79 (59%)
 Frame = +2

Query: 230 IYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPI 409
           I   G  R +++P L+  Q    G++P  A++ + E L++P + +Y + TFY++      
Sbjct: 13  ITQSGSSRLSLLPCLEAVQE-ECGYIPHEAVNYLRECLSIPSIDIYGMITFYSLLSTNQK 71

Query: 410 GKYHVQVCTTTPCWLRGSD 466
           GKY +++C + PC+L G++
Sbjct: 72  GKYVIRLCNSLPCYLNGTE 90


>UniRef50_Q9S5X7 Cluster: Fe-hydrogenase, subunit gamma; n=5;
           Thermotogaceae|Rep: Fe-hydrogenase, subunit gamma -
           Thermotoga maritima
          Length = 164

 Score = 56.0 bits (129), Expect = 4e-07
 Identities = 31/86 (36%), Positives = 48/86 (55%)
 Frame = +2

Query: 206 KRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFY 385
           ++VE +L  Y  G+KR  +I +L   Q     +LP   ++ V+  + +P  ++Y VATFY
Sbjct: 9   EKVEEILKKY--GYKRENLIKILLEIQEIYR-YLPEDVINYVSTAMGIPPAKIYGVATFY 65

Query: 386 TMFIRRPIGKYHVQVCTTTPCWLRGS 463
             F  +P GKY + VC  T C + GS
Sbjct: 66  AQFSLKPKGKYTIMVCDGTACHMAGS 91


>UniRef50_Q1NQY7 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
           subunit; n=5; Bacteria|Rep: NADH dehydrogenase
           (Ubiquinone), 24 kDa subunit - delta proteobacterium
           MLMS-1
          Length = 200

 Score = 56.0 bits (129), Expect = 4e-07
 Identities = 31/91 (34%), Positives = 50/91 (54%)
 Frame = +2

Query: 191 TAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYE 370
           T P  + VE   A+   G++ G +I  L   Q+ + G++   AM ++A  L LP  +VY 
Sbjct: 16  TEPRWRPVET--AMRRNGYQAGGLIEALHAVQQ-SYGYIDEEAMGRLATALTLPLSKVYG 72

Query: 371 VATFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463
           V TFY  F  +P G++   VC  T C+++G+
Sbjct: 73  VVTFYHFFHLKPKGRHSCVVCLGTACYIKGA 103


>UniRef50_A5FS13 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
           subunit; n=3; Dehalococcoides|Rep: NADH dehydrogenase
           (Ubiquinone), 24 kDa subunit - Dehalococcoides sp. BAV1
          Length = 154

 Score = 56.0 bits (129), Expect = 4e-07
 Identities = 32/90 (35%), Positives = 48/90 (53%)
 Frame = +2

Query: 197 PNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVA 376
           P  K    +L++Y    K+  +IP+L LA + N  +L    M KVA  + +P   VY +A
Sbjct: 4   PVNKTYTPVLSLYEA--KKENLIPIL-LAFQRNFSYLSRDMMQKVAAYVGVPESSVYNIA 60

Query: 377 TFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
           TFY+ F   P G + V VC  T C + G++
Sbjct: 61  TFYSQFRLEPPGIHRVHVCRGTACHVMGAE 90


>UniRef50_Q7NZH7 Cluster: NADH-ubiquinone oxidoreductase, chain E;
           n=8; Betaproteobacteria|Rep: NADH-ubiquinone
           oxidoreductase, chain E - Chromobacterium violaceum
          Length = 166

 Score = 55.6 bits (128), Expect = 5e-07
 Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
 Frame = +2

Query: 212 VEALLAIYPEGHKRGAMIPLLDLA--QRXNGGWLPISA------MHKVAEILNLPRMRVY 367
           ++  +A YP   KR A++  L +A  +R   G  P +       +  VA  L +  +  Y
Sbjct: 10  IDREVAKYPADQKRSAVMGALRIALDERRAAGETPEARCLNPELIEFVANYLGIAPVAAY 69

Query: 368 EVATFYTMFIRRPIGKYHVQVCTTTPCWLRG 460
           EVATFY M+  +P+GK+ + VCT  PC L G
Sbjct: 70  EVATFYNMYDMKPVGKFKITVCTNLPCALSG 100


>UniRef50_Q1PWG7 Cluster: Similar to to proton-translocating NADH
           dehydrogenase I, 24 kDa subunit; n=1; Candidatus
           Kuenenia stuttgartiensis|Rep: Similar to to
           proton-translocating NADH dehydrogenase I, 24 kDa
           subunit - Candidatus Kuenenia stuttgartiensis
          Length = 164

 Score = 55.6 bits (128), Expect = 5e-07
 Identities = 27/73 (36%), Positives = 43/73 (58%)
 Frame = +2

Query: 245 HKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHV 424
           H RG++IP+L   Q   G +LP   +  V+E LN+    +  VATFY  F  RP G++ +
Sbjct: 28  HGRGSLIPILQTIQTAYG-YLPEKVVDFVSERLNISVNEIIGVATFYAQFHMRPRGRHII 86

Query: 425 QVCTTTPCWLRGS 463
           + C+ T C ++G+
Sbjct: 87  KACSGTACHVKGA 99


>UniRef50_A1HP41 Cluster: NADH-quinone oxidoreductase, E subunit;
           n=9; Bacteria|Rep: NADH-quinone oxidoreductase, E
           subunit - Thermosinus carboxydivorans Nor1
          Length = 166

 Score = 55.6 bits (128), Expect = 5e-07
 Identities = 32/85 (37%), Positives = 51/85 (60%)
 Frame = +2

Query: 209 RVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYT 388
           +++ +LA Y +G K GA+IP+L  AQ   G +L    +  +AE L++P  ++Y V TFY 
Sbjct: 21  QLDEILAKY-QGVK-GALIPVLQEAQNAYG-YLSKEVIEYIAEKLDIPVSQIYGVVTFYA 77

Query: 389 MFIRRPIGKYHVQVCTTTPCWLRGS 463
            F   P G+  ++VC  T C +RG+
Sbjct: 78  QFHLNPRGRNIIRVCQGTACHVRGA 102


>UniRef50_Q8YYU5 Cluster: NADH dehydrogenase I chain E; n=4;
           Bacteria|Rep: NADH dehydrogenase I chain E - Anabaena
           sp. (strain PCC 7120)
          Length = 164

 Score = 54.8 bits (126), Expect = 9e-07
 Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
 Frame = +2

Query: 206 KRVEAL-LAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATF 382
           KR++ L  AI    +++ A+I +L  AQ   G +L    +  +A  L LP  RVY VATF
Sbjct: 15  KRLKMLDAAIKRHQYQQDALIEILHKAQELFG-YLENDLLLYIAHSLKLPPSRVYGVATF 73

Query: 383 YTMFIRRPIGKYHVQVCTTTPCWLRGS 463
           Y +F   P G +   VCT T C+++GS
Sbjct: 74  YHLFSLAPQGVHSCVVCTGTACYVKGS 100


>UniRef50_Q1PW48 Cluster: Similar to NADH:ubiquinone oxidoreductase
           24 kDa subunit, mitochondrial; n=1; Candidatus Kuenenia
           stuttgartiensis|Rep: Similar to NADH:ubiquinone
           oxidoreductase 24 kDa subunit, mitochondrial -
           Candidatus Kuenenia stuttgartiensis
          Length = 152

 Score = 54.4 bits (125), Expect = 1e-06
 Identities = 30/89 (33%), Positives = 48/89 (53%)
 Frame = +2

Query: 200 NQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVAT 379
           +Q  V+  L I   G+ + A IP+L   Q   G +LP+  + +V E   + +  +Y VAT
Sbjct: 2   SQSNVKKYLEIC--GNTKEASIPILQSIQEEYG-YLPLDVLDQVCEESEITKSHLYGVAT 58

Query: 380 FYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
           FY  F   P G+  ++VC  T C ++G+D
Sbjct: 59  FYAQFKLTPKGRNAIKVCKGTACHVKGAD 87


>UniRef50_A5D2H5 Cluster: NADH:ubiquinone oxidoreductase 24 kD
           subunit; n=1; Pelotomaculum thermopropionicum SI|Rep:
           NADH:ubiquinone oxidoreductase 24 kD subunit -
           Pelotomaculum thermopropionicum SI
          Length = 192

 Score = 54.4 bits (125), Expect = 1e-06
 Identities = 28/71 (39%), Positives = 41/71 (57%)
 Frame = +2

Query: 251 RGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQV 430
           +G +I +L  AQ   G +LP      +AE L +P   V  V TFY++F  RP GKY + V
Sbjct: 49  KGQLIRILQKAQDIFG-YLPDDVQAFIAERLRVPVAEVNGVVTFYSLFSTRPKGKYIINV 107

Query: 431 CTTTPCWLRGS 463
           C  T C+++G+
Sbjct: 108 CMGTACYVKGA 118


>UniRef50_Q9RU91 Cluster: NADH dehydrogenase I, E subunit; n=2;
           Deinococcus|Rep: NADH dehydrogenase I, E subunit -
           Deinococcus radiodurans
          Length = 207

 Score = 54.0 bits (124), Expect = 2e-06
 Identities = 28/77 (36%), Positives = 44/77 (57%)
 Frame = +2

Query: 236 PEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGK 415
           P+G +R A++PLL   Q   G ++    + ++AE+       V  V +FY+ +   P G+
Sbjct: 22  PQG-RRSALMPLLREVQDAEG-FVAAPRLAEIAELCGTTATEVRSVMSFYSTYHTVPTGR 79

Query: 416 YHVQVCTTTPCWLRGSD 466
           YH+QVC+T  C L GSD
Sbjct: 80  YHLQVCSTLMCALAGSD 96


>UniRef50_Q8RBD2 Cluster: NADH:ubiquinone oxidoreductase 24 kD
           subunit; n=3; Thermoanaerobacter|Rep: NADH:ubiquinone
           oxidoreductase 24 kD subunit - Thermoanaerobacter
           tengcongensis
          Length = 169

 Score = 54.0 bits (124), Expect = 2e-06
 Identities = 22/70 (31%), Positives = 44/70 (62%)
 Frame = +2

Query: 254 GAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVC 433
           G++I +++ AQ   G +LPI     +++ + +P   ++ ++TFY+ F  +P GKY + +C
Sbjct: 37  GSLIAVMNDAQEIFG-YLPIEVQLFISQEMKVPLTEIFGISTFYSRFTLKPSGKYKINLC 95

Query: 434 TTTPCWLRGS 463
             T C++RG+
Sbjct: 96  MGTACYVRGA 105


>UniRef50_Q6FE68 Cluster: NADH dehydrogenase I chain E; n=5;
           Moraxellaceae|Rep: NADH dehydrogenase I chain E -
           Acinetobacter sp. (strain ADP1)
          Length = 170

 Score = 54.0 bits (124), Expect = 2e-06
 Identities = 28/92 (30%), Positives = 51/92 (55%)
 Frame = +2

Query: 191 TAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYE 370
           TA     +E  +  YP  + R A +  L   QR NG W+  + M+ +A++L++    +  
Sbjct: 19  TADEIHEIEHHIHHYP--YPRAASLDALKCVQRRNG-WVDDAQMNAIAQMLSISVADLEG 75

Query: 371 VATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
           VATFY    R+P+G++ + +C +  C+L G++
Sbjct: 76  VATFYNRIYRQPVGRHVILLCDSIACFLMGAE 107


>UniRef50_Q0AWA4 Cluster: NADH:ubiquinone oxidoreductase 24 kD
           subunit NuoE precursor; n=1; Syntrophomonas wolfei
           subsp. wolfei str. Goettingen|Rep: NADH:ubiquinone
           oxidoreductase 24 kD subunit NuoE precursor -
           Syntrophomonas wolfei subsp. wolfei (strain Goettingen)
          Length = 166

 Score = 53.6 bits (123), Expect = 2e-06
 Identities = 22/55 (40%), Positives = 37/55 (67%)
 Frame = +2

Query: 302 WLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
           +LP SA+   AE + +P  +VY +ATFY  F  +P G+++++VC  T C ++GS+
Sbjct: 40  YLPRSALELTAEYVGVPFSQVYSMATFYRAFSLQPRGRFNIKVCDGTTCHIKGSN 94


>UniRef50_Q89AU3 Cluster: NADH-quinone oxidoreductase subunit E;
           n=1; Buchnera aphidicola (Baizongia pistaciae)|Rep:
           NADH-quinone oxidoreductase subunit E - Buchnera
           aphidicola subsp. Baizongia pistaciae
          Length = 171

 Score = 53.6 bits (123), Expect = 2e-06
 Identities = 27/102 (26%), Positives = 54/102 (52%)
 Frame = +2

Query: 161 EDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEI 340
           E +  I  +F    Q+++E    I      R ++I +L   Q+ + GW+    + ++A I
Sbjct: 8   EMSKKIDIKFKLTIQEKIEIFNIIKNYRTVRSSLIEILKFVQK-SYGWISNELITELACI 66

Query: 341 LNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
           L + +  + E+ATFY+   R+PIG+  ++ C +  C++ G +
Sbjct: 67  LKISKCDIEEIATFYSQIFRQPIGRNIIKYCDSVVCYVNGCE 108


>UniRef50_Q1IS36 Cluster: NADH-quinone oxidoreductase, E subunit;
           n=1; Acidobacteria bacterium Ellin345|Rep: NADH-quinone
           oxidoreductase, E subunit - Acidobacteria bacterium
           (strain Ellin345)
          Length = 160

 Score = 53.2 bits (122), Expect = 3e-06
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
 Frame = +2

Query: 239 EGH---KRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPI 409
           +GH   KR  ++P L L  +   G+L   A+ ++A  + L  + V  V ++Y+M   +PI
Sbjct: 15  QGHYPTKRSPLVPFL-LYVQDEVGYLSDEAIVEIANRVELTPLEVRNVISYYSMLRTKPI 73

Query: 410 GKYHVQVCTTTPCWLRGSD 466
           GKY+VQVCT   C  RG +
Sbjct: 74  GKYNVQVCTNICCLQRGGE 92


>UniRef50_Q01WJ0 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
           subunit; n=2; Bacteria|Rep: NADH dehydrogenase
           (Ubiquinone), 24 kDa subunit - Solibacter usitatus
           (strain Ellin6076)
          Length = 170

 Score = 52.8 bits (121), Expect = 4e-06
 Identities = 27/74 (36%), Positives = 41/74 (55%)
 Frame = +2

Query: 242 GHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYH 421
           G +  A+I  L   Q   G +L  + +  VA +L +P  RVY  ATFY  F  +P G++ 
Sbjct: 28  GREPHALIETLHTVQECFG-YLDEAGLRFVASVLRVPLSRVYGAATFYHFFTLKPKGRHT 86

Query: 422 VQVCTTTPCWLRGS 463
             VCT T C+++G+
Sbjct: 87  CVVCTGTACYIKGA 100


>UniRef50_A0UVM6 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
           subunit; n=1; Clostridium cellulolyticum H10|Rep: NADH
           dehydrogenase (Ubiquinone), 24 kDa subunit - Clostridium
           cellulolyticum H10
          Length = 163

 Score = 52.8 bits (121), Expect = 4e-06
 Identities = 26/65 (40%), Positives = 38/65 (58%)
 Frame = +2

Query: 269 LLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPC 448
           +L+L        LP   +  VAE L++P  +VY V TFY+MF   P G+Y V+VC + PC
Sbjct: 29  MLELQSMSGTNSLPHEWVVFVAEALDMPVSKVYSVITFYSMFGTEPRGRYLVEVCKSGPC 88

Query: 449 WLRGS 463
            + G+
Sbjct: 89  HVSGA 93


>UniRef50_Q2FP98 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
           subunit; n=1; Methanospirillum hungatei JF-1|Rep: NADH
           dehydrogenase (Ubiquinone), 24 kDa subunit -
           Methanospirillum hungatei (strain JF-1 / DSM 864)
          Length = 160

 Score = 52.8 bits (121), Expect = 4e-06
 Identities = 25/89 (28%), Positives = 52/89 (58%)
 Frame = +2

Query: 200 NQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVAT 379
           ++KR++ ++  YP  +  G  + +L   Q      +P+  +  V+E L+LP   ++ + T
Sbjct: 2   DEKRLDEIIEKYP--YPAGRTLGVLREIQ-IQERHIPMDTLKLVSEKLDLPLSELFALVT 58

Query: 380 FYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
           FY+ F  +P+G++ + VC  TPC ++G++
Sbjct: 59  FYSFFSLKPVGEHLITVCMGTPCHVKGAE 87


>UniRef50_A5V6C3 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
           subunit; n=2; Sphingomonadaceae|Rep: NADH dehydrogenase
           (Ubiquinone), 24 kDa subunit - Sphingomonas wittichii
           RW1
          Length = 159

 Score = 52.4 bits (120), Expect = 5e-06
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
 Frame = +2

Query: 191 TAPNQKRVEALLA--IYPEGHKRGAMIPLL-DLAQRXNGGWLPISAMHKVAEILNLPRMR 361
           T   ++ VEA++A  +  +G +RGA++PLL DL +    G++    +  VA  +NL R  
Sbjct: 2   TMERREPVEAMVARLLAAQGERRGALLPLLHDLQEEL--GFVGEETVAAVAAAMNLSRAE 59

Query: 362 VYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRG 460
           V+ V +FY  F + P G++ V+ C    C  RG
Sbjct: 60  VHGVVSFYHDFRKAPAGRHVVKYCRAESCRSRG 92


>UniRef50_Q3A461 Cluster: NADP-reducing hydrogenase chain A; n=5;
           Deltaproteobacteria|Rep: NADP-reducing hydrogenase chain
           A - Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
          Length = 173

 Score = 52.0 bits (119), Expect = 6e-06
 Identities = 26/73 (35%), Positives = 41/73 (56%)
 Frame = +2

Query: 248 KRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQ 427
           K G ++ +L  AQ   G +LP      VA+ + +   +VY V +FYT F   P GK+ + 
Sbjct: 39  KEGHLVTVLHKAQSLFG-YLPKEVQEFVADHMEVSLAQVYGVVSFYTFFTMIPKGKHPIS 97

Query: 428 VCTTTPCWLRGSD 466
           VC  T C+++G+D
Sbjct: 98  VCMGTACFVKGAD 110


>UniRef50_A0LJN9 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
           subunit; n=3; Deltaproteobacteria|Rep: NADH
           dehydrogenase (Ubiquinone), 24 kDa subunit -
           Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB)
          Length = 163

 Score = 52.0 bits (119), Expect = 6e-06
 Identities = 20/54 (37%), Positives = 32/54 (59%)
 Frame = +2

Query: 299 GWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRG 460
           G++   AM + A IL +  + + E+ATFY    R P+G+Y + VC +  CW+ G
Sbjct: 36  GYMTDEAMEEAAGILGMTTLELEELATFYDHIYRSPVGRYVIHVCDSAVCWMEG 89


>UniRef50_Q2RHR8 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
           subunit; n=1; Moorella thermoacetica ATCC 39073|Rep:
           NADH dehydrogenase (Ubiquinone), 24 kDa subunit -
           Moorella thermoacetica (strain ATCC 39073)
          Length = 157

 Score = 51.6 bits (118), Expect = 8e-06
 Identities = 26/69 (37%), Positives = 40/69 (57%)
 Frame = +2

Query: 257 AMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCT 436
           A+I +L  +Q   G +LP +    +A+ L L   +VY V +FY  F  +P GKY V VC 
Sbjct: 26  ALIEVLHQSQELVG-YLPRNVQVAIADGLGLSLSQVYSVVSFYNHFTTKPKGKYQVSVCM 84

Query: 437 TTPCWLRGS 463
            T C+++G+
Sbjct: 85  GTACFVKGA 93


>UniRef50_Q2AG84 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
           subunit; n=5; Bacteria|Rep: NADH dehydrogenase
           (Ubiquinone), 24 kDa subunit - Halothermothrix orenii H
           168
          Length = 167

 Score = 51.6 bits (118), Expect = 8e-06
 Identities = 28/78 (35%), Positives = 40/78 (51%)
 Frame = +2

Query: 230 IYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPI 409
           I   G  +  +IP+L   Q+    +LP   +  +A +++L    VY VATFY  F   P 
Sbjct: 18  IEKHGKDQSKLIPILQEVQKEYR-YLPEEILTYIATVMDLSPATVYGVATFYAQFSLDPK 76

Query: 410 GKYHVQVCTTTPCWLRGS 463
           GKY + VC  T C + GS
Sbjct: 77  GKYVINVCDGTACHVSGS 94


>UniRef50_Q4AMU5 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
           subunit; n=1; Chlorobium phaeobacteroides BS1|Rep: NADH
           dehydrogenase (Ubiquinone), 24 kDa subunit - Chlorobium
           phaeobacteroides BS1
          Length = 195

 Score = 51.2 bits (117), Expect = 1e-05
 Identities = 26/75 (34%), Positives = 41/75 (54%)
 Frame = +2

Query: 242 GHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYH 421
           G    A +PLL   Q   G +LP  AM  +    ++   ++Y VATFY+ F   P+G++ 
Sbjct: 23  GKSVSAAVPLLQAVQNEYG-YLPREAMDIIVAETDVGASQLYGVATFYSQFRLDPVGRHV 81

Query: 422 VQVCTTTPCWLRGSD 466
           ++VC  T C + G+D
Sbjct: 82  IKVCHGTACHVSGAD 96


>UniRef50_Q0PIE2 Cluster: NAD(P)H-quinone oxidoreductase 24 kDa
           subunit; n=1; Heliobacillus mobilis|Rep: NAD(P)H-quinone
           oxidoreductase 24 kDa subunit - Heliobacillus mobilis
          Length = 171

 Score = 51.2 bits (117), Expect = 1e-05
 Identities = 26/81 (32%), Positives = 45/81 (55%)
 Frame = +2

Query: 221 LLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIR 400
           +L  YP+  +R  +  L D+ +     ++P  +M  +A+ L LP  ++Y +ATFY     
Sbjct: 15  ILEGYPK-EQRYTLAMLQDIQKEFQ--FIPRESMELIADYLELPLSKIYSLATFYKALSL 71

Query: 401 RPIGKYHVQVCTTTPCWLRGS 463
           RP GK+ +++C  T C +R S
Sbjct: 72  RPKGKHVIKICDGTACHIRSS 92


>UniRef50_A0LLS9 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
           subunit; n=1; Syntrophobacter fumaroxidans MPOB|Rep:
           NADH dehydrogenase (Ubiquinone), 24 kDa subunit -
           Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB)
          Length = 151

 Score = 50.8 bits (116), Expect = 1e-05
 Identities = 28/71 (39%), Positives = 37/71 (52%)
 Frame = +2

Query: 248 KRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQ 427
           KR A+IP+L   Q    G+LP  AM   A       + VY V+TFY  F   P+G++ V 
Sbjct: 15  KRDALIPVLQDIQ-GEFGYLPPHAMQAAARHCRTSAVEVYGVSTFYAQFKFSPVGRHTVT 73

Query: 428 VCTTTPCWLRG 460
           VC  T C + G
Sbjct: 74  VCQGTACHVMG 84


>UniRef50_A7IL17 Cluster: NADH dehydrogenase (Ubiquinone) 24 kDa
           subunit; n=3; Alphaproteobacteria|Rep: NADH
           dehydrogenase (Ubiquinone) 24 kDa subunit - Xanthobacter
           sp. (strain Py2)
          Length = 176

 Score = 50.4 bits (115), Expect = 2e-05
 Identities = 27/68 (39%), Positives = 37/68 (54%)
 Frame = +2

Query: 245 HKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHV 424
           H  GA +P+L   Q    G++P  A+  +AE LNL R  VY V TFY  F R   G++ V
Sbjct: 33  HLEGATMPILHALQE-TFGFVPDPAVPMIAESLNLSRAEVYGVLTFYHDFRREAPGRHVV 91

Query: 425 QVCTTTPC 448
           ++C    C
Sbjct: 92  KLCAAEAC 99


>UniRef50_A5UZ48 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
           subunit; n=10; Bacteria|Rep: NADH dehydrogenase
           (Ubiquinone), 24 kDa subunit - Roseiflexus sp. RS-1
          Length = 178

 Score = 50.4 bits (115), Expect = 2e-05
 Identities = 28/73 (38%), Positives = 41/73 (56%)
 Frame = +2

Query: 245 HKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHV 424
           ++  A+I +L  AQ   G +L    +  +A  L+LP  RVY VATFY  F   P G++  
Sbjct: 35  YRPDALIEVLHRAQELFG-YLSTDLLLFIANSLHLPPSRVYGVATFYHFFSLAPKGEHSC 93

Query: 425 QVCTTTPCWLRGS 463
            VC  T C++RG+
Sbjct: 94  VVCLGTACYVRGA 106


>UniRef50_A1ALP3 Cluster: NADH-quinone oxidoreductase, E subunit;
           n=1; Pelobacter propionicus DSM 2379|Rep: NADH-quinone
           oxidoreductase, E subunit - Pelobacter propionicus
           (strain DSM 2379)
          Length = 154

 Score = 50.4 bits (115), Expect = 2e-05
 Identities = 27/88 (30%), Positives = 44/88 (50%)
 Frame = +2

Query: 203 QKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATF 382
           +++   L A YP+      ++P L +            A+  +A  L LP M+V E  T+
Sbjct: 5   EEKFAQLRATYPKELNSSLVMPFLRIMLDEKKSLGESDAVF-IANYLGLPAMQVKEALTW 63

Query: 383 YTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
           YTMF R P+G + ++VC    C L G++
Sbjct: 64  YTMFYRHPVGTHVIKVCRNIACSLMGAE 91


>UniRef50_Q4AHT8 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
           subunit; n=1; Chlorobium phaeobacteroides BS1|Rep: NADH
           dehydrogenase (Ubiquinone), 24 kDa subunit - Chlorobium
           phaeobacteroides BS1
          Length = 172

 Score = 50.0 bits (114), Expect = 3e-05
 Identities = 26/72 (36%), Positives = 41/72 (56%)
 Frame = +2

Query: 248 KRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQ 427
           K+G +IP+L   Q   G ++P  A  K+ E + L    +Y VATFY  F   P+GK+ ++
Sbjct: 33  KKGNLIPVLQGVQSIFG-YVPREAFIKLNEEMGLQLSDMYGVATFYAQFRLNPVGKHIIK 91

Query: 428 VCTTTPCWLRGS 463
           VC  T C ++ +
Sbjct: 92  VCHGTACHVQSA 103


>UniRef50_O66842 Cluster: NADH-quinone oxidoreductase subunit E;
           n=2; Aquifex aeolicus|Rep: NADH-quinone oxidoreductase
           subunit E - Aquifex aeolicus
          Length = 160

 Score = 50.0 bits (114), Expect = 3e-05
 Identities = 29/95 (30%), Positives = 50/95 (52%)
 Frame = +2

Query: 182 FEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMR 361
           FEF    + +++  +  +P+  KR A++  L   Q   G ++P  ++  +A++L LP   
Sbjct: 6   FEFPEELKTKLQEHINYFPK--KRQAILLCLHEIQNYYG-YIPPESLKPLADMLELPLNH 62

Query: 362 VYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
           V  V  FY MF R    KY ++VC +  C L G++
Sbjct: 63  VEGVVAFYDMFDREDKAKYRIRVCVSIVCHLMGTN 97


>UniRef50_Q749M0 Cluster: NAD-reducing hydrogenase, putative; n=4;
           Bacteria|Rep: NAD-reducing hydrogenase, putative -
           Geobacter sulfurreducens
          Length = 191

 Score = 49.2 bits (112), Expect = 4e-05
 Identities = 33/89 (37%), Positives = 45/89 (50%)
 Frame = +2

Query: 197 PNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVA 376
           P  K VE  L  Y   ++  A++ +L +AQ    G L    M  VA  L +P  RVY VA
Sbjct: 20  PRFKVVERTLKQYQ--YRADALLEVLHVAQE-TFGCLSDELMTHVARQLRVPPSRVYGVA 76

Query: 377 TFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463
           TFY  F     G++   VCT T C+++ S
Sbjct: 77  TFYHFFTLEARGEHSCVVCTGTACYVKRS 105


>UniRef50_Q2C5T5 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
           subunit; n=2; Vibrionaceae|Rep: NADH dehydrogenase
           (Ubiquinone), 24 kDa subunit - Photobacterium sp. SKA34
          Length = 188

 Score = 49.2 bits (112), Expect = 4e-05
 Identities = 29/91 (31%), Positives = 50/91 (54%)
 Frame = +2

Query: 191 TAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYE 370
           T   +  +E  +A YPE  KR   I  L   Q    G++   +++ V+E+ +L   ++ E
Sbjct: 3   TDQERAHLEEHIAHYPE--KRAGAIYCLYFMQ-DKYGYITKPSLNLVSELTDLSTTQLDE 59

Query: 371 VATFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463
           + TFYT+  RRP+G+  ++VC +  C  RG+
Sbjct: 60  LITFYTLLRRRPVGRNIMRVCDSISCHTRGA 90


>UniRef50_Q98BW7 Cluster: NAD-dependent formate dehydrogenase gamma
           subunit; n=15; Proteobacteria|Rep: NAD-dependent formate
           dehydrogenase gamma subunit - Rhizobium loti
           (Mesorhizobium loti)
          Length = 159

 Score = 48.8 bits (111), Expect = 6e-05
 Identities = 26/71 (36%), Positives = 40/71 (56%)
 Frame = +2

Query: 254 GAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVC 433
           G ++P+L   Q    G +P +A+  +A+ LNL R  V+ V TFY  F  RP G++ +++C
Sbjct: 26  GPLLPILHEIQ-DEFGHVPQAALPVIADGLNLSRAEVHGVVTFYHDFRARPAGRHVLKLC 84

Query: 434 TTTPCWLRGSD 466
               C   GSD
Sbjct: 85  QAEACQSMGSD 95


>UniRef50_Q835I9 Cluster: NAD-dependent formate dehydrogenase, gamma
           subunit, putative; n=1; Enterococcus faecalis|Rep:
           NAD-dependent formate dehydrogenase, gamma subunit,
           putative - Enterococcus faecalis (Streptococcus
           faecalis)
          Length = 162

 Score = 48.4 bits (110), Expect = 8e-05
 Identities = 22/64 (34%), Positives = 34/64 (53%)
 Frame = +2

Query: 269 LLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPC 448
           L++L      G++       VAE L+L   RVYE+ +FY +    P  KY +++C +TPC
Sbjct: 27  LIELQFASEEGYIDQETAQLVAEHLHLTEARVYEIVSFYAILKTEPQAKYVLKICNSTPC 86

Query: 449 WLRG 460
              G
Sbjct: 87  HYTG 90


>UniRef50_Q2LS97 Cluster: NADH-quinone oxidoreductase chain F; n=2;
           Syntrophus aciditrophicus SB|Rep: NADH-quinone
           oxidoreductase chain F - Syntrophus aciditrophicus
           (strain SB)
          Length = 638

 Score = 48.4 bits (110), Expect = 8e-05
 Identities = 25/68 (36%), Positives = 35/68 (51%)
 Frame = +2

Query: 260 MIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTT 439
           M  L DL        L    ++ VAE +NLP+  V     FYTMF  RP  K+ ++VC +
Sbjct: 52  MAILRDLENLSGNQQLSPETLNAVAEAMNLPQSTVAGFVGFYTMFSTRPRAKFLIRVCKS 111

Query: 440 TPCWLRGS 463
            PC + G+
Sbjct: 112 GPCHVMGA 119


>UniRef50_Q6SGN4 Cluster: NADH-quinone oxidoreductase, E subunit;
           n=1; uncultured bacterium 463|Rep: NADH-quinone
           oxidoreductase, E subunit - uncultured bacterium 463
          Length = 167

 Score = 48.4 bits (110), Expect = 8e-05
 Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
 Frame = +2

Query: 191 TAPNQKRVEALLAIYPEGHKRGAM-IPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVY 367
           +A +Q+ ++A+ A       R A+ I  L + Q   G W+   ++  +A  L++    + 
Sbjct: 11  SALSQEELQAIDAEIAHVPYRDAVAIDALKIVQAHRG-WVSDESLSAIAAHLHMSADELD 69

Query: 368 EVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
            +ATFY +  RRP+G   + +C +  CW++G D
Sbjct: 70  GIATFYNLIYRRPVGDKVILLCNSISCWIKGCD 102


>UniRef50_Q89QJ0 Cluster: NADH dehydrogenase I chain E; n=16;
           Alphaproteobacteria|Rep: NADH dehydrogenase I chain E -
           Bradyrhizobium japonicum
          Length = 162

 Score = 47.6 bits (108), Expect = 1e-04
 Identities = 26/79 (32%), Positives = 41/79 (51%)
 Frame = +2

Query: 230 IYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPI 409
           I     + GA + +L   Q   G ++P +A+  VA+ LNL R  V+ V TFY  F  +P 
Sbjct: 21  IAEHARQEGATLVILHALQAAFG-YVPEAAIPMVAQALNLSRAEVHGVFTFYHDFRHKPA 79

Query: 410 GKYHVQVCTTTPCWLRGSD 466
           G++ +++C    C   G D
Sbjct: 80  GRHVLKLCRAEACQAAGGD 98


>UniRef50_A3JB74 Cluster: ATP synthase subunit E; n=1; Marinobacter
           sp. ELB17|Rep: ATP synthase subunit E - Marinobacter sp.
           ELB17
          Length = 178

 Score = 47.6 bits (108), Expect = 1e-04
 Identities = 25/72 (34%), Positives = 38/72 (52%)
 Frame = +2

Query: 245 HKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHV 424
           HK GA++P+L   Q    G++P  A+  +AE+L   R  ++ V +FY  F   P G   +
Sbjct: 36  HKPGALLPILHAIQ-DRVGYVPEDAVPIIAEMLQQTRADIHGVISFYHHFRTHPSGSNLL 94

Query: 425 QVCTTTPCWLRG 460
           +VC    C  RG
Sbjct: 95  EVCRAEACQARG 106


>UniRef50_A0QNT7 Cluster: Formate dehydrogenase, gamma subunit; n=1;
           Mycobacterium smegmatis str. MC2 155|Rep: Formate
           dehydrogenase, gamma subunit - Mycobacterium smegmatis
           (strain ATCC 700084 / mc(2)155)
          Length = 161

 Score = 47.6 bits (108), Expect = 1e-04
 Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
 Frame = +2

Query: 191 TAPNQKRVEALLAIYPEGHK--RGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRV 364
           T   +  V  L+      H+  RG ++P+L   Q   G  +P  A+  +AE LNL R  V
Sbjct: 4   TTTGETSVATLVREIAADHRDHRGPLLPILHAVQERLG-CVPAEAVPVLAEELNLSRADV 62

Query: 365 YEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463
           + V TFY  F   P G+  V+VC    C   G+
Sbjct: 63  HGVITFYHDFRSEPAGRTTVRVCRAEACQALGA 95


>UniRef50_Q6N1Z1 Cluster: NADH-ubiquinone dehydrogenase chain E;
           n=8; Alphaproteobacteria|Rep: NADH-ubiquinone
           dehydrogenase chain E - Rhodopseudomonas palustris
          Length = 162

 Score = 47.2 bits (107), Expect = 2e-04
 Identities = 22/75 (29%), Positives = 38/75 (50%)
 Frame = +2

Query: 242 GHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYH 421
           G  + AM+  L L Q   G W+  + + + A++L +    +  +ATFY+   R P+G   
Sbjct: 19  GGAKAAMVEALKLVQEAEG-WVSDAHLKEAADVLGVTPAEIDALATFYSQIFRSPVGDTV 77

Query: 422 VQVCTTTPCWLRGSD 466
           + +C    C+L G D
Sbjct: 78  ILLCDGLSCYLCGGD 92


>UniRef50_A0LGJ1 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
           subunit; n=2; Bacteria|Rep: NADH dehydrogenase
           (Ubiquinone), 24 kDa subunit - Syntrophobacter
           fumaroxidans (strain DSM 10017 / MPOB)
          Length = 162

 Score = 47.2 bits (107), Expect = 2e-04
 Identities = 27/78 (34%), Positives = 41/78 (52%)
 Frame = +2

Query: 230 IYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPI 409
           I P   +  ++I +L  AQ   G +LP     +VAE L L    +Y V TFY  F   P 
Sbjct: 21  IEPYRGQPNSLIQVLAKAQEYIG-YLPKWVQVQVAEGLGLSLQEIYGVTTFYAFFSLIPR 79

Query: 410 GKYHVQVCTTTPCWLRGS 463
           G++ + VC  T C+++G+
Sbjct: 80  GRHKLSVCAGTACYVKGT 97


>UniRef50_Q74GA4 Cluster: NADH dehydrogenase I, E subunit; n=6;
           Geobacter|Rep: NADH dehydrogenase I, E subunit -
           Geobacter sulfurreducens
          Length = 173

 Score = 46.4 bits (105), Expect = 3e-04
 Identities = 23/70 (32%), Positives = 41/70 (58%)
 Frame = +2

Query: 254 GAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVC 433
           G ++P+L   Q    G++P   +  VAE LN+   +++ V TFY  F  +P G++ ++VC
Sbjct: 36  GNLMPVLQGIQ-DEYGYVPRPTIDLVAERLNVYPSQIFGVLTFYAQFHLKPRGRFIIRVC 94

Query: 434 TTTPCWLRGS 463
             T C ++G+
Sbjct: 95  VGTACHVQGA 104


>UniRef50_Q0AVX7 Cluster: Fe-hydrogenase, gamma subunit; n=4;
           Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
           Fe-hydrogenase, gamma subunit - Syntrophomonas wolfei
           subsp. wolfei (strain Goettingen)
          Length = 148

 Score = 46.4 bits (105), Expect = 3e-04
 Identities = 18/55 (32%), Positives = 33/55 (60%)
 Frame = +2

Query: 302 WLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
           ++P  A+   A++ ++P  + Y VATFY+     P GK  +++C + PC + G+D
Sbjct: 31  YIPEDAVVYAAQVFDIPEAKAYGVATFYSYLKVGPRGKNVIRICESAPCHIAGAD 85


>UniRef50_A6PPY8 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
           subunit; n=1; Victivallis vadensis ATCC BAA-548|Rep:
           NADH dehydrogenase (Ubiquinone), 24 kDa subunit -
           Victivallis vadensis ATCC BAA-548
          Length = 170

 Score = 46.0 bits (104), Expect = 4e-04
 Identities = 25/73 (34%), Positives = 38/73 (52%)
 Frame = +2

Query: 245 HKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHV 424
           +    +IP+L   Q     +L    +  VA  + +P  RVY VATFY  F  +P GKY +
Sbjct: 27  YSESKLIPILQEVQAVYK-YLSKDMISYVATSIGVPPSRVYGVATFYAHFSMQPKGKYII 85

Query: 425 QVCTTTPCWLRGS 463
           ++C  T C ++ S
Sbjct: 86  KLCDGTACHVKKS 98


>UniRef50_A3YBB2 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
           subunit; n=1; Marinomonas sp. MED121|Rep: NADH
           dehydrogenase (Ubiquinone), 24 kDa subunit - Marinomonas
           sp. MED121
          Length = 189

 Score = 46.0 bits (104), Expect = 4e-04
 Identities = 22/69 (31%), Positives = 38/69 (55%)
 Frame = +2

Query: 254 GAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVC 433
           G ++P+L   Q   G ++P S++  + + LN+ R  V+ V TFY  F  +P G++ ++VC
Sbjct: 43  GPLLPILHEVQHQLG-YVPDSSLPIIGKALNISRAEVHGVVTFYHHFSSKPRGRHIIEVC 101

Query: 434 TTTPCWLRG 460
               C   G
Sbjct: 102 RAESCQSMG 110


>UniRef50_Q47WZ1 Cluster: Formate dehydrogenase, gamma subunit; n=1;
           Colwellia psychrerythraea 34H|Rep: Formate
           dehydrogenase, gamma subunit - Colwellia psychrerythraea
           (strain 34H / ATCC BAA-681) (Vibriopsychroerythus)
          Length = 163

 Score = 45.6 bits (103), Expect = 5e-04
 Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
 Frame = +2

Query: 191 TAPNQKRVEALLAIYPEGHKR--GAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRV 364
           TA N K ++ +  I  E H+   GAM+P+L   Q  +  ++P +A+  +A+ LN+ +  V
Sbjct: 2   TATNDKGLQQIATII-EQHQTLPGAMLPILHAIQN-DLSFIPSNALPLIAKALNVSKAEV 59

Query: 365 YEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463
           + V +FY  F     G + +++C    C   GS
Sbjct: 60  HGVISFYHHFRTEEPGAHVIEICRGESCQAMGS 92


>UniRef50_A4M6K3 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
           subunit; n=2; Bacteria|Rep: NADH dehydrogenase
           (Ubiquinone), 24 kDa subunit - Petrotoga mobilis SJ95
          Length = 154

 Score = 45.6 bits (103), Expect = 5e-04
 Identities = 20/55 (36%), Positives = 34/55 (61%)
 Frame = +2

Query: 299 GWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463
           G++    + ++A+  ++P+ R+Y V +FY+MF   P GKY V+VC +  C L  S
Sbjct: 36  GFISEEDILRIAQKRDIPKARLYGVISFYSMFHLEPTGKYIVRVCDSVSCRLNES 90


>UniRef50_A3ETZ6 Cluster: NADH ubiquinone oxidoreductase; n=1;
           Leptospirillum sp. Group II UBA|Rep: NADH ubiquinone
           oxidoreductase - Leptospirillum sp. Group II UBA
          Length = 627

 Score = 44.8 bits (101), Expect = 0.001
 Identities = 21/68 (30%), Positives = 36/68 (52%)
 Frame = +2

Query: 257 AMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCT 436
           A++PLL         ++  + + +++++  L    +  + TFY  F+  P GK  V+VC 
Sbjct: 29  AVLPLLHYYMEKKN-YISEADVSRISQLTGLSVSDILGIGTFYQHFVFHPTGKNSVRVCL 87

Query: 437 TTPCWLRG 460
           TTPC  RG
Sbjct: 88  TTPCLFRG 95


>UniRef50_A1AP34 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
           subunit precursor; n=2; Bacteria|Rep: NADH dehydrogenase
           (Ubiquinone), 24 kDa subunit precursor - Pelobacter
           propionicus (strain DSM 2379)
          Length = 169

 Score = 44.8 bits (101), Expect = 0.001
 Identities = 19/54 (35%), Positives = 31/54 (57%)
 Frame = +2

Query: 302 WLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463
           +LP+  +  V E L++P  +V+ V +FY  F   P GKY +++C  T C  + S
Sbjct: 45  YLPMEVLSHVIEELDIPATKVFGVVSFYAHFTLEPRGKYVIRLCDGTACHAKRS 98


>UniRef50_A0J5R7 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
           subunit; n=1; Shewanella woodyi ATCC 51908|Rep: NADH
           dehydrogenase (Ubiquinone), 24 kDa subunit - Shewanella
           woodyi ATCC 51908
          Length = 179

 Score = 44.8 bits (101), Expect = 0.001
 Identities = 25/92 (27%), Positives = 46/92 (50%)
 Frame = +2

Query: 191 TAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYE 370
           ++  Q+ ++ L++  P+    G  I  L L Q   G W+  +++H ++    +P   +  
Sbjct: 22  SSKEQQGIDELISHSPQ--LAGITIDALKLIQAERG-WVSDASLHALSLYTQIPVADLDS 78

Query: 371 VATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
           VATFY +  R+P+GK  +  C    C L G +
Sbjct: 79  VATFYNLIFRQPVGKVVLHPCDGISCDLMGGE 110


>UniRef50_Q9ZBV8 Cluster: Putative respiratory chain oxidoreductase;
           n=2; Streptomyces|Rep: Putative respiratory chain
           oxidoreductase - Streptomyces coelicolor
          Length = 646

 Score = 44.0 bits (99), Expect = 0.002
 Identities = 25/72 (34%), Positives = 33/72 (45%)
 Frame = +2

Query: 248 KRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQ 427
           +R  ++P L  A     GW+   A+  V   L +P    Y VATFY MF  RP     + 
Sbjct: 34  RRDQLLPALH-ALNDRVGWISEGALDYVCRRLTVPPAEAYGVATFYAMFSVRPRPATVLH 92

Query: 428 VCTTTPCWLRGS 463
           VCT   C   G+
Sbjct: 93  VCTDLACTAAGA 104


>UniRef50_Q2S5I9 Cluster: NADH-ubiquinone oxidoreductase 24 kDa
           subunit, putative; n=2; Sphingobacteriales genera
           incertae sedis|Rep: NADH-ubiquinone oxidoreductase 24
           kDa subunit, putative - Salinibacter ruber (strain DSM
           13855)
          Length = 249

 Score = 44.0 bits (99), Expect = 0.002
 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
 Frame = +2

Query: 152 DTPEDNPSIPFE-----FTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPIS 316
           + P+ +P   F      +T   + ++EA    YPE   + A++ +L LAQ    G+L   
Sbjct: 36  ELPDQDPDPAFSDDELVWTDEEEAQIEAWKDQYPED--QAAIMKVLWLAQE-KFGYLAPE 92

Query: 317 AMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRG 460
            +   A+ L++   + Y VATFY  + +   G Y + VCT   C + G
Sbjct: 93  VIQLCADTLDMTFTQAYGVATFYHQYFKEEKGTYVLDVCTCFTCQVCG 140


>UniRef50_Q608U6 Cluster: Formate dehydrogenase, gamma subunit; n=3;
           Proteobacteria|Rep: Formate dehydrogenase, gamma subunit
           - Methylococcus capsulatus
          Length = 159

 Score = 43.6 bits (98), Expect = 0.002
 Identities = 23/71 (32%), Positives = 38/71 (53%)
 Frame = +2

Query: 254 GAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVC 433
           GA++P+L   Q    G++P  A+ ++A+ LNL R  V+ V +FY  F     GK+ + +C
Sbjct: 23  GALLPILHGIQ-DRIGFIPEDAVPQIAKALNLSRAEVHGVISFYHYFRTTAPGKHTIHLC 81

Query: 434 TTTPCWLRGSD 466
               C    S+
Sbjct: 82  RAESCQAMNSE 92


>UniRef50_A1FMP2 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
           subunit; n=5; Pseudomonas|Rep: NADH dehydrogenase
           (Ubiquinone), 24 kDa subunit - Pseudomonas putida W619
          Length = 160

 Score = 43.6 bits (98), Expect = 0.002
 Identities = 23/71 (32%), Positives = 39/71 (54%)
 Frame = +2

Query: 254 GAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVC 433
           GA++P+L   Q  + G++P +A+  +A  LNL    V  V +FY  F   P  ++ +++C
Sbjct: 23  GALLPILHAVQE-SIGFIPDAAVADIAHALNLSLAEVRGVISFYHDFRTAPPARHTLRLC 81

Query: 434 TTTPCWLRGSD 466
               C  RGS+
Sbjct: 82  RAESCQSRGSE 92


>UniRef50_A3DCI7 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
           subunit; n=5; Clostridium|Rep: NADH dehydrogenase
           (Ubiquinone), 24 kDa subunit - Clostridium thermocellum
           (strain ATCC 27405 / DSM 1237)
          Length = 165

 Score = 43.2 bits (97), Expect = 0.003
 Identities = 24/74 (32%), Positives = 37/74 (50%)
 Frame = +2

Query: 242 GHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYH 421
           G    A+I +L   Q     ++P      +++ L +   R++ VATFY  F   P GKY 
Sbjct: 22  GTSETAIIAILQSIQEEYH-YIPKEVFPYLSKKLKVSEARIFSVATFYENFSLEPKGKYI 80

Query: 422 VQVCTTTPCWLRGS 463
           ++VC  T C +R S
Sbjct: 81  IKVCDGTACHVRKS 94


>UniRef50_Q057X2 Cluster: NADH dehydrogenase I chain E; n=1;
           Buchnera aphidicola str. Cc (Cinara cedri)|Rep: NADH
           dehydrogenase I chain E - Buchnera aphidicola subsp.
           Cinara cedri
          Length = 156

 Score = 42.3 bits (95), Expect = 0.005
 Identities = 18/70 (25%), Positives = 38/70 (54%)
 Frame = +2

Query: 245 HKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHV 424
           + + A I  L + Q     W+   ++  +++IL++P   V  +ATFY    R+P+G+  +
Sbjct: 21  NSQAACIEALKIVQEHRK-WICKDSIIAISKILSIPACEVESIATFYCHIFRKPVGRNII 79

Query: 425 QVCTTTPCWL 454
           + C +  C++
Sbjct: 80  RYCDSVVCFI 89


>UniRef50_A6PMG8 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
           subunit precursor; n=1; Victivallis vadensis ATCC
           BAA-548|Rep: NADH dehydrogenase (Ubiquinone), 24 kDa
           subunit precursor - Victivallis vadensis ATCC BAA-548
          Length = 150

 Score = 42.3 bits (95), Expect = 0.005
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = +2

Query: 299 GWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463
           G++   ++  ++E   +P + V  V +FY  F R   GKY + +C  T C ++GS
Sbjct: 30  GYVSDESIRAISEYFGIPEVEVEGVLSFYAQFKRVKPGKYKIAICDGTACHIKGS 84


>UniRef50_A0RMD2 Cluster: Hydrogenosomal NADH dehydrogenase 24 kDa
           subunit; n=1; Campylobacter fetus subsp. fetus
           82-40|Rep: Hydrogenosomal NADH dehydrogenase 24 kDa
           subunit - Campylobacter fetus subsp. fetus (strain
           82-40)
          Length = 163

 Score = 42.3 bits (95), Expect = 0.005
 Identities = 23/72 (31%), Positives = 38/72 (52%)
 Frame = +2

Query: 251 RGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQV 430
           R  ++P L + QR  G ++    +  + + L +  M   E   FY+MF ++  GK+ ++ 
Sbjct: 24  RALVLPSLWMVQRAQG-FIDAKDVLYLEKTLGIRSMFYAEAIGFYSMFNQKSKGKFELKF 82

Query: 431 CTTTPCWLRGSD 466
           C T  C LRGSD
Sbjct: 83  CKTITCKLRGSD 94


>UniRef50_UPI0000E87F9D Cluster: ATP synthase subunit E; n=1;
           Methylophilales bacterium HTCC2181|Rep: ATP synthase
           subunit E - Methylophilales bacterium HTCC2181
          Length = 157

 Score = 41.5 bits (93), Expect = 0.009
 Identities = 23/73 (31%), Positives = 36/73 (49%)
 Frame = +2

Query: 248 KRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQ 427
           K GA++PL+   Q  + G++P  +   ++   NL    ++   TFY  F   P GK  +Q
Sbjct: 21  KPGALLPLMHAIQ-DSLGYIPEDSYPIISSAYNLSIAEIHGFVTFYHHFRTSPSGKNILQ 79

Query: 428 VCTTTPCWLRGSD 466
           VC    C   GS+
Sbjct: 80  VCRAESCQSMGSE 92


>UniRef50_Q28P85 Cluster: NADH dehydrogenase (Ubiquinone) 24 kDa
           subunit; n=1; Jannaschia sp. CCS1|Rep: NADH
           dehydrogenase (Ubiquinone) 24 kDa subunit - Jannaschia
           sp. (strain CCS1)
          Length = 167

 Score = 41.5 bits (93), Expect = 0.009
 Identities = 25/90 (27%), Positives = 42/90 (46%)
 Frame = +2

Query: 197 PNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVA 376
           P+   VE    I       G ++P+L   Q   G ++P  A   +A  LN+    ++ V 
Sbjct: 10  PDDLLVEVDAIIQKNIALEGPLLPILHDVQAAFG-YVPDDARALIATALNITEAELHGVI 68

Query: 377 TFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
           +FY  F R+P GK  +++C    C   G++
Sbjct: 69  SFYHDFRRKPAGKRVLKICRAEACQAMGAN 98


>UniRef50_A6VXL9 Cluster: NADH dehydrogenase (Ubiquinone) 24 kDa
           subunit; n=3; Gammaproteobacteria|Rep: NADH
           dehydrogenase (Ubiquinone) 24 kDa subunit - Marinomonas
           sp. MWYL1
          Length = 165

 Score = 41.5 bits (93), Expect = 0.009
 Identities = 24/72 (33%), Positives = 37/72 (51%)
 Frame = +2

Query: 248 KRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQ 427
           K GA++PLL   Q     ++P  A+  +A  L L R  V+ V +FY  F  +  G++ V+
Sbjct: 24  KPGALLPLLHAIQ-DRFSYIPEDAVALIAGALKLSRAEVHGVISFYHHFRTKQPGRHVVE 82

Query: 428 VCTTTPCWLRGS 463
           VC    C   G+
Sbjct: 83  VCRAEACQAVGA 94


>UniRef50_A3Z0U6 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
           subunit; n=1; Synechococcus sp. WH 5701|Rep: NADH
           dehydrogenase (Ubiquinone), 24 kDa subunit -
           Synechococcus sp. WH 5701
          Length = 168

 Score = 40.3 bits (90), Expect = 0.021
 Identities = 24/69 (34%), Positives = 37/69 (53%)
 Frame = +2

Query: 257 AMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCT 436
           A+I +L  AQ+    +L    +  VA  L LP  RV   A+FY +F  +P  ++   VCT
Sbjct: 36  ALIEVLHGAQKLYS-YLSDDLLRHVATRLQLPLSRVKGTASFYHLFRFQPPARHRCVVCT 94

Query: 437 TTPCWLRGS 463
            T C ++G+
Sbjct: 95  GTACQIQGA 103


>UniRef50_Q1VMJ2 Cluster: Formate dehydrogenase, beta subunit; n=1;
           Psychroflexus torquis ATCC 700755|Rep: Formate
           dehydrogenase, beta subunit - Psychroflexus torquis ATCC
           700755
          Length = 243

 Score = 38.3 bits (85), Expect = 0.083
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
 Frame = +2

Query: 200 NQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVAT 379
           NQ  +  +  I PE  +R  +I  L L Q      L    +  +A ++NLP   ++EVA+
Sbjct: 25  NQAAINNVKTILPEILQRDMLIEYLHLIQ-DKVSHLSSDNLSALAFLMNLPLSEIWEVAS 83

Query: 380 FYTMFI-----RRPIGKYHVQVCTTTPCWLRGSD 466
           FY  F      + P     +++CT+  C L  S+
Sbjct: 84  FYDHFTLVKDSQNPPPTRTIRICTSVTCSLFNSE 117


>UniRef50_Q483I3 Cluster: Formate dehydrogenase, gamma subunit; n=1;
           Colwellia psychrerythraea 34H|Rep: Formate
           dehydrogenase, gamma subunit - Colwellia psychrerythraea
           (strain 34H / ATCC BAA-681) (Vibriopsychroerythus)
          Length = 168

 Score = 37.9 bits (84), Expect = 0.11
 Identities = 21/70 (30%), Positives = 35/70 (50%)
 Frame = +2

Query: 254 GAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVC 433
           GA++P+L   Q  +  ++P  A+  VA+ L      +Y V TFY  F     G++ +++C
Sbjct: 26  GALLPILHDIQH-HFDYIPKKAIAIVAQGLQQTEAEIYGVITFYAHFQLNKPGRHIIEIC 84

Query: 434 TTTPCWLRGS 463
               C   GS
Sbjct: 85  RGEACQAMGS 94


>UniRef50_Q0AL75 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
           subunit; n=1; Maricaulis maris MCS10|Rep: NADH
           dehydrogenase (Ubiquinone), 24 kDa subunit - Maricaulis
           maris (strain MCS10)
          Length = 163

 Score = 37.5 bits (83), Expect = 0.14
 Identities = 21/70 (30%), Positives = 37/70 (52%)
 Frame = +2

Query: 257 AMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCT 436
           A+I +L   Q  + G +  +A+  +A+ LNL R  V  V +FY  F R+P  ++  ++C 
Sbjct: 26  ALIEVLHWLQA-SAGHISDAAIATIADALNLSRAEVLGVVSFYHDFRRQPGARHTFKLCR 84

Query: 437 TTPCWLRGSD 466
              C   G++
Sbjct: 85  AEACQAAGAE 94


>UniRef50_A4XP94 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
           subunit; n=1; Pseudomonas mendocina ymp|Rep: NADH
           dehydrogenase (Ubiquinone), 24 kDa subunit - Pseudomonas
           mendocina ymp
          Length = 164

 Score = 37.1 bits (82), Expect = 0.19
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
 Frame = +2

Query: 176 IPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLL-DLAQRXNGGWLPISAMHKVAEILNLP 352
           +P  F AP Q        +     + GA++P+L D+  R   G +P   +  +AE L L 
Sbjct: 4   LPQRF-APEQCEAVTREVLAAHRGQPGALLPILHDIQDRL--GAVPPELLPLIAEDLCLS 60

Query: 353 RMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRG 460
           R  V+ V +FY  F   P G+  +++C    C   G
Sbjct: 61  RAEVHGVVSFYHDFRATPPGRQVLKLCQAEACQSMG 96


>UniRef50_Q63RZ3 Cluster: NAD-dependent formate dehydrogenase gamma
           subunit; n=28; Burkholderia|Rep: NAD-dependent formate
           dehydrogenase gamma subunit - Burkholderia pseudomallei
           (Pseudomonas pseudomallei)
          Length = 171

 Score = 36.3 bits (80), Expect = 0.33
 Identities = 21/91 (23%), Positives = 45/91 (49%)
 Frame = +2

Query: 194 APNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEV 373
           +P+    +AL+  + +  +  +++ +L   Q  + G++P + +  +A+ LNL R  V+ V
Sbjct: 16  SPHSVAPDALVRAHAQPGR--SLVAILHAIQ-DDAGYVPPACVEPLAKALNLSRAEVHGV 72

Query: 374 ATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
            T+Y  F   P     +++C    C   G +
Sbjct: 73  LTYYHHFRTAPPAHVTIRLCRAEACRSMGGE 103


>UniRef50_Q5P4U3 Cluster: Formate dehydrogenase, NAD(P) reducing,
           beta subunit; n=41; Proteobacteria|Rep: Formate
           dehydrogenase, NAD(P) reducing, beta subunit - Azoarcus
           sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
          Length = 585

 Score = 35.5 bits (78), Expect = 0.58
 Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
 Frame = +2

Query: 197 PNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVA 376
           P   R+ A  A+  E  +   +I  L   Q  +G  L    +  +AE + L R  V+EVA
Sbjct: 36  PASARLAASAALAGETPRADRLIEYLHRLQDEHGA-LHADHLAALAEAMKLARAEVFEVA 94

Query: 377 TFYTMFIRRPIG-----KYHVQVCTTTPCWLRG 460
           TFY  F   P G        V+VC +  C + G
Sbjct: 95  TFYHHFDFVPAGGKAPPALTVRVCESLGCAMAG 127


>UniRef50_Q47HE6 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
           subunit:Respiratory-chain NADH dehydrogenase domain, 51
           kDa subunit; n=1; Dechloromonas aromatica RCB|Rep: NADH
           dehydrogenase (Ubiquinone), 24 kDa
           subunit:Respiratory-chain NADH dehydrogenase domain, 51
           kDa subunit - Dechloromonas aromatica (strain RCB)
          Length = 632

 Score = 35.5 bits (78), Expect = 0.58
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 302 WLPISAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHV 424
           W+   A+ ++   L +PR ++  VA FY  F   P GKY V
Sbjct: 42  WISPEAIDRMQVTLGVPRTKIEGVAGFYAFFYTEPRGKYRV 82


>UniRef50_A7RRZ0 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 188

 Score = 33.1 bits (72), Expect = 3.1
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -3

Query: 433 THLYMILSYWSPNKHSIECCNFIHSHSW*V*NFSYFVHGRNW 308
           +H ++ LSY   + H +   + IHSH+W     S+ +H ++W
Sbjct: 141 SHHWVTLSYLIHSHHWVTLSHLIHSHNW--VTLSHLIHSQHW 180


>UniRef50_Q5NPV1 Cluster: Two-component response regulator; n=3;
           Sphingomonadales|Rep: Two-component response regulator -
           Zymomonas mobilis
          Length = 300

 Score = 32.3 bits (70), Expect = 5.4
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = +2

Query: 140 FVHRDTPEDNPS-IPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPIS 316
           F+H+ +P  N + IP    A  +  +EA+L  Y +G   GA+     L +  NGG L + 
Sbjct: 16  FIHQMSPRANQAFIPVNCAALPETMLEAMLFGYTKGSFTGALADNKGLFRSANGGTLLLD 75

Query: 317 AMHKVAEILNLPRMRVYE 370
            + ++   L    +RV +
Sbjct: 76  EISELPLGLQAKLLRVLQ 93


>UniRef50_Q9Z5S2 Cluster: Torf protein; n=2; Zymomonas mobilis|Rep:
           Torf protein - Zymomonas mobilis
          Length = 403

 Score = 32.3 bits (70), Expect = 5.4
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = +2

Query: 140 FVHRDTPEDNPS-IPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPIS 316
           F+H+ +P  N + IP    A  +  +EA+L  Y +G   GA+     L +  NGG L + 
Sbjct: 157 FIHQMSPRANQAFIPVNCAALPETMLEAMLFGYTKGSFTGALADNKGLFRSANGGTLLLD 216

Query: 317 AMHKVAEILNLPRMRVYE 370
            + ++   L    +RV +
Sbjct: 217 EISELPLGLQAKLLRVLQ 234


>UniRef50_A1WBG0 Cluster: NADH dehydrogenase (Quinone) precursor;
           n=6; Proteobacteria|Rep: NADH dehydrogenase (Quinone)
           precursor - Acidovorax sp. (strain JS42)
          Length = 640

 Score = 31.9 bits (69), Expect = 7.2
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
 Frame = +2

Query: 212 VEALLAIYP-EGHKRGAMIPLLDLAQRXNGGWLPISAMHKVA--EILNLPRMRVYEVATF 382
           V  LL   P +G++R  +I  L    R N  +  +   H VA    +NLP  +VYEVA+F
Sbjct: 45  VAQLLGPRPADGYRRDLLIEYL---HRLNDHFGVLHDRHLVALARQMNLPMAQVYEVASF 101

Query: 383 YTMF--IR---RPIGKYHVQVCTTTPCWLRGS 463
           Y  F  +R       +  V+VC +  C + G+
Sbjct: 102 YHHFEIVRGHDAQAPRLVVRVCDSLSCTMAGA 133


>UniRef50_Q55Y42 Cluster: Putative uncharacterized protein; n=1;
           Filobasidiella neoformans|Rep: Putative uncharacterized
           protein - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 294

 Score = 31.9 bits (69), Expect = 7.2
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 48  CYLASKLGFRPCGACLLEVCRP-LLPSSMTVSSSTETPLKTTLVSRL 185
           CYL   L F  C ACLL  C+P  LPS      S + PL  ++V R+
Sbjct: 24  CYLHDFLPFN-CPACLLAFCQPHFLPS----QHSCKAPLPASMVDRI 65


>UniRef50_A5I5J7 Cluster: Sensor protein; n=4; Clostridium
           botulinum|Rep: Sensor protein - Clostridium botulinum A
           str. ATCC 3502
          Length = 702

 Score = 31.5 bits (68), Expect = 9.5
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +2

Query: 137 LFVHRDTPEDNPSIPFEFTAPNQKRVEALLAIYP---EGHKRGAMIPLLDLAQ 286
           +F+     ++   IP  FT  N ++V   L + P   EG K+GA++ L+D+ Q
Sbjct: 89  VFIALKEQKEIKEIPLIFTKNNYEKVCFSLTVIPINLEGTKKGALVNLMDITQ 141


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 455,555,388
Number of Sequences: 1657284
Number of extensions: 8100686
Number of successful extensions: 19719
Number of sequences better than 10.0: 151
Number of HSP's better than 10.0 without gapping: 19269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19684
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 25610991215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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