Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I19
         (468 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0024 + 25014274-25014375,25014655-25014720,25015117-250152...   141   2e-34
07_01_0564 - 4183441-4183530,4183683-4183752,4183972-4184063,418...    31   0.35 
01_06_1273 + 35896320-35896400,35896548-35896736,35897817-358979...    31   0.35 
07_03_0699 + 20772415-20773450,20789050-20789606,20790971-207915...    27   7.5  
05_03_0436 + 14006683-14006863,14007618-14008036                       27   10.0 
03_02_0534 - 9267297-9267734,9268376-9268649,9268782-9268889,926...    27   10.0 

>05_06_0024 +
           25014274-25014375,25014655-25014720,25015117-25015233,
           25015757-25015834,25015911-25016016,25016150-25016196,
           25016386-25016463,25016898-25016963,25017102-25017165,
           25017406-25017428
          Length = 248

 Score =  141 bits (342), Expect = 2e-34
 Identities = 58/106 (54%), Positives = 83/106 (78%)
 Frame = +2

Query: 146 HRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMH 325
           H D+PE+NP +P+EFT  N K+V  +L+ YP  +K+  +IP+LDLAQ+ +GGW+P++AM+
Sbjct: 35  HLDSPENNPDMPWEFTEANMKKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVAAMN 94

Query: 326 KVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGS 463
            +A+I+ +  +RVYEVATFYTMF R  +GKYH+ VC TTPC +RGS
Sbjct: 95  AIAKIVEVAPIRVYEVATFYTMFNRTKVGKYHLLVCGTTPCMIRGS 140


>07_01_0564 -
           4183441-4183530,4183683-4183752,4183972-4184063,
           4184141-4184240,4184372-4184478,4184703-4184768,
           4184879-4185013,4185653-4185808,4186113-4186262,
           4186426-4186557,4187604-4187693
          Length = 395

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -3

Query: 154 VSVDEETVMLEGRSGLQTSRRHAPQGLNPS 65
           + +DEE++   G  G QTS RHA Q L+P+
Sbjct: 323 IDIDEESLAFLGEIGQQTSLRHAIQLLSPA 352


>01_06_1273 +
           35896320-35896400,35896548-35896736,35897817-35897948,
           35898093-35898242,35898564-35898719,35899462-35899596,
           35899706-35899771,35900016-35900122,35900258-35900357,
           35900436-35900527,35901026-35901095,35901229-35901318
          Length = 455

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -3

Query: 154 VSVDEETVMLEGRSGLQTSRRHAPQGLNPS 65
           + +DEE++   G  G QTS RHA Q L+P+
Sbjct: 383 IEIDEESLAFLGEIGQQTSLRHAIQLLSPA 412


>07_03_0699 +
           20772415-20773450,20789050-20789606,20790971-20791567,
           20792258-20792413
          Length = 781

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 51  YLASKLGFRPCGACLLEVCRPLLPSSMTVSSST 149
           + ASK G R   ACLL V     P S  ++ +T
Sbjct: 460 HCASKAGHRDVAACLLRVMDQATPRSRNLTGAT 492


>05_03_0436 + 14006683-14006863,14007618-14008036
          Length = 199

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 206 KRVEALLAIYPEGHKRGAMIPLLDLAQ 286
           KR+EAL  ++  G + G ++ LLDLA+
Sbjct: 142 KRMEALHYMFEYGQEEGHIVVLLDLAK 168


>03_02_0534 -
           9267297-9267734,9268376-9268649,9268782-9268889,
           9269476-9269567,9269652-9269711,9269812-9269994
          Length = 384

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 69  GFRPCGACLLEVCRPLLPSSMTVSSSTETPLKTTLVSRLNLQRLI 203
           G + C AC L +C    PS+   ++  + PL T    R  + RL+
Sbjct: 266 GHQMCAACTLALCCHAKPSA-AAATPCQQPLPTCPFCRGGISRLV 309


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,285,713
Number of Sequences: 37544
Number of extensions: 223773
Number of successful extensions: 556
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)