Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I19
         (468 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24599| Best HMM Match : Complex1_24kDa (HMM E-Value=0)             166   7e-42
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_37644| Best HMM Match : fn3 (HMM E-Value=1.6e-19)                   28   4.4  
SB_2262| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.9  

>SB_24599| Best HMM Match : Complex1_24kDa (HMM E-Value=0)
          Length = 487

 Score =  166 bits (404), Expect = 7e-42
 Identities = 73/107 (68%), Positives = 87/107 (81%)
 Frame = +2

Query: 146 HRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPISAMH 325
           HRDT  +NP +PFEF   N KR +++L  YP GH++ A+IPLLDLAQR + GWLPISAM+
Sbjct: 23  HRDTDGNNPDLPFEFNEANLKRAKSILNNYPTGHEKAAVIPLLDLAQRQHDGWLPISAMN 82

Query: 326 KVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
            VA+ LN+PRMRVYEVATFYTMF R P+GKYHVQVCTTTPC LR +D
Sbjct: 83  YVADFLNMPRMRVYEVATFYTMFNREPVGKYHVQVCTTTPCQLRNAD 129


>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 111 PLLPSSMTVSSSTETPLKTTLVSRLNL 191
           P L SSMT +S+T TP +   +S L L
Sbjct: 598 PSLESSMTTNSTTSTPAEAVAISSLVL 624


>SB_37644| Best HMM Match : fn3 (HMM E-Value=1.6e-19)
          Length = 256

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 152 DTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMI 265
           DTP D P I  +F  P+   ++ + +  P G++ G ++
Sbjct: 111 DTP-DRPPIDLQFALPSPTSLDVMWSPVPRGYENGVIL 147


>SB_2262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 688

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +2

Query: 185 EFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWL--PISAMHKVAEILNLPRM 358
           E T   +  +EA+  +   G KR A +PL     R + GW+   +S + KV     + R 
Sbjct: 499 ELTERERLALEAIANVRTSGRKRKAPMPLNVSPPRQSSGWVRGALSLLQKVCGYRGIGRR 558

Query: 359 R 361
           +
Sbjct: 559 K 559


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,221,141
Number of Sequences: 59808
Number of extensions: 263116
Number of successful extensions: 555
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)