Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I19
         (468 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77663-9|CAB01203.1|  239|Caenorhabditis elegans Hypothetical pr...   170   5e-43
Z49130-3|CAA88968.1|  395|Caenorhabditis elegans Hypothetical pr...    30   0.72 
Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical pr...    28   2.9  
U39652-8|AAK82909.1|  334|Caenorhabditis elegans Protein kinase ...    28   3.8  
U39652-7|AAA80405.2|  366|Caenorhabditis elegans Protein kinase ...    28   3.8  
U39652-6|ABI18144.1|  376|Caenorhabditis elegans Protein kinase ...    28   3.8  
J05220-1|AAA27980.1|  376|Caenorhabditis elegans protein ( C.ele...    28   3.8  
U70849-4|AAK67231.1|  179|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p...    27   8.9  

>Z77663-9|CAB01203.1|  239|Caenorhabditis elegans Hypothetical
           protein F53F4.10 protein.
          Length = 239

 Score =  170 bits (413), Expect = 5e-43
 Identities = 75/110 (68%), Positives = 95/110 (86%)
 Frame = +2

Query: 137 LFVHRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPIS 316
           L VHRDT E+N ++ F+FT+ NQ+R++A++ IYPEGHK GA+IPLLDLAQR +G WLPIS
Sbjct: 27  LMVHRDTKENNLNVKFKFTSENQERIKAIMDIYPEGHKAGALIPLLDLAQRQHG-WLPIS 85

Query: 317 AMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSD 466
           AMH+VA+IL +PRMR YEVATFYTMF R+P+GKY +QVC TTPC LRG++
Sbjct: 86  AMHEVAKILEVPRMRAYEVATFYTMFNRQPVGKYFLQVCATTPCMLRGAE 135


>Z49130-3|CAA88968.1|  395|Caenorhabditis elegans Hypothetical
           protein T06D8.5 protein.
          Length = 395

 Score = 30.3 bits (65), Expect = 0.72
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +2

Query: 236 PEGHKRGAMIPLLDLAQRXNGGWLPISAMHKVAEILNLPRMRVYEVATFYTM 391
           P+  +R A+   L LAQ   G W+  S +       ++PR+  Y +AT  TM
Sbjct: 162 PDMKRRMALATTLLLAQGGIGWWMVKSGLDPSKNSSDVPRVSQYRLATHLTM 213


>Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical protein
            F10F2.2 protein.
          Length = 1343

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 5    SQYSFIKIKSNIKIMLSSLKTGVQTLW 85
            S +  +KI+ N+ IMLS ++  V  LW
Sbjct: 1199 SSFGPVKIEKNVSIMLSGMENSVLGLW 1225


>U39652-8|AAK82909.1|  334|Caenorhabditis elegans Protein kinase
           protein 2, isoform b protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 202 IRRCKFKRDTRVVFRGVSVDEETVMLEGRSGLQTSR 95
           + RC F+  T VV +G   DE  ++LEG + +   R
Sbjct: 224 LERCDFEPGTHVVEQGQPGDEFFIILEGEANVLQKR 259


>U39652-7|AAA80405.2|  366|Caenorhabditis elegans Protein kinase
           protein 2, isoform a protein.
          Length = 366

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 202 IRRCKFKRDTRVVFRGVSVDEETVMLEGRSGLQTSR 95
           + RC F+  T VV +G   DE  ++LEG + +   R
Sbjct: 256 LERCDFEPGTHVVEQGQPGDEFFIILEGEANVLQKR 291


>U39652-6|ABI18144.1|  376|Caenorhabditis elegans Protein kinase
           protein 2, isoform c protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 202 IRRCKFKRDTRVVFRGVSVDEETVMLEGRSGLQTSR 95
           + RC F+  T VV +G   DE  ++LEG + +   R
Sbjct: 266 LERCDFEPGTHVVEQGQPGDEFFIILEGEANVLQKR 301


>J05220-1|AAA27980.1|  376|Caenorhabditis elegans protein (
           C.elegans cAMP-dependentprotein kinase subunit R mRNA,
           complete cds. ).
          Length = 376

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 202 IRRCKFKRDTRVVFRGVSVDEETVMLEGRSGLQTSR 95
           + RC F+  T VV +G   DE  ++LEG + +   R
Sbjct: 266 LERCDFEPGTHVVEQGQPGDEFFIILEGEANVLQKR 301


>U70849-4|AAK67231.1|  179|Caenorhabditis elegans Hypothetical
           protein F29B9.5 protein.
          Length = 179

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 17/61 (27%), Positives = 32/61 (52%)
 Frame = -3

Query: 238 WVDC*EGFNSLLIRRCKFKRDTRVVFRGVSVDEETVMLEGRSGLQTSRRHAPQGLNPSFE 59
           W+    G + L   + KF+  T  V R ++   + V+++G+S +    +  PQGL  ++E
Sbjct: 115 WLCVKYGDDILTRYQSKFEIKTIPVLRVINAAGKMVVVDGKSEVVDKGKADPQGLFAAWE 174

Query: 58  A 56
           A
Sbjct: 175 A 175


>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
            protein F47C12.1 protein.
          Length = 1827

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +3

Query: 60   SKLGFRPCGACLLEVCRPLLPSSMTVSSSTETPLKTT 170
            S  G  PC AC +   +P +     +  S  T  +TT
Sbjct: 1624 SNSGLEPCSACPINFYQPTVGQQSCIECSNTTATQTT 1660


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,573,637
Number of Sequences: 27780
Number of extensions: 197642
Number of successful extensions: 477
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)