Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_I18
(562 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5982| Best HMM Match : PAP2 (HMM E-Value=8.3e-19) 67 8e-12
SB_36347| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 9e-06
SB_28320| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.017
SB_13658| Best HMM Match : MbeD_MobD (HMM E-Value=2.3) 32 0.37
SB_11275| Best HMM Match : Pkinase_Tyr (HMM E-Value=0.0005) 32 0.37
SB_30078| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_12940| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_48675| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_38732| Best HMM Match : Integrin_alpha (HMM E-Value=0.47) 29 3.4
SB_28287| Best HMM Match : DUF202 (HMM E-Value=1.8) 28 6.0
SB_9858| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_5982| Best HMM Match : PAP2 (HMM E-Value=8.3e-19)
Length = 320
Score = 67.3 bits (157), Expect = 8e-12
Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 3/138 (2%)
Frame = +1
Query: 133 YLYGLLMNLCIIEVMKGIVGNPRPVFFELCQPDTAKTCNGSEYVGTFTCTSSYSWWYQMD 312
+LYG+ + I V+ + G P F +C+P+T Y+ CT +D
Sbjct: 125 FLYGIPLLFLIFNVVSVMTGRLTPNFLAVCKPNTTLFDCNEGYITKDVCTGD-----ALD 179
Query: 313 SYR---SFPSGHTSMSVYCGFFLAWYLQNRAFNWSHRSVVLVPVLQMLCISYAIVCSLTR 483
R SFPS +T +++YC F+A LQ A R+ +L LQ+ I A+ ++R
Sbjct: 180 VKRARLSFPSVNTLVAMYCMVFVALSLQ--AAECLSRTKLLRTALQVAAILGALAVGMSR 237
Query: 484 ITDHRHHWWDVTVGAAVG 537
+ D+ HHW DV G +G
Sbjct: 238 VKDYSHHWSDVAAGVILG 255
>SB_36347| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 47.2 bits (107), Expect = 9e-06
Identities = 24/73 (32%), Positives = 41/73 (56%)
Frame = +1
Query: 133 YLYGLLMNLCIIEVMKGIVGNPRPVFFELCQPDTAKTCNGSEYVGTFTCTSSYSWWYQMD 312
+L+G +N + +V K VG RP F +C+PDT+ +E++ + CT + +
Sbjct: 379 FLFGAAVNTLLTDVGKYSVGRLRPHFLTMCKPDTSLFNCTTEFITSVVCTGDPA--IIRE 436
Query: 313 SYRSFPSGHTSMS 351
+ SFPSGH+S +
Sbjct: 437 ARLSFPSGHSSFA 449
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/73 (34%), Positives = 41/73 (56%)
Frame = +1
Query: 133 YLYGLLMNLCIIEVMKGIVGNPRPVFFELCQPDTAKTCNGSEYVGTFTCTSSYSWWYQMD 312
+L+G +N + +V K VG RP F +C+PDT+ +E++ + CT + Q
Sbjct: 149 FLFGAAVNTLLTDVGKYSVGRLRPHFLTVCKPDTSLFNCTTEFITSVVCTGDPAIIRQ-- 206
Query: 313 SYRSFPSGHTSMS 351
+ SFPSGH+S +
Sbjct: 207 ARLSFPSGHSSFA 219
>SB_28320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 36.3 bits (80), Expect = 0.017
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +1
Query: 229 DTAKTCNGSEYVGTFTCTSSYSWWYQM--DSYRSFPSGHTSMSVYCGFFLAWYLQNRAFN 402
+T S + G + C S S WY++ D+ P+ TS + YCG + +L N
Sbjct: 9 NTIDRSQNSHHNGNYLCDSGLSGWYRISGDAGYRMPTSCTSQN-YCGTHASGWL-----N 62
Query: 403 WSHRSVVLVPVLQMLCISYAIVC 471
+H SV V + +C SY+ C
Sbjct: 63 GAHPSVADGVVTRTVCYSYSSNC 85
>SB_13658| Best HMM Match : MbeD_MobD (HMM E-Value=2.3)
Length = 529
Score = 31.9 bits (69), Expect = 0.37
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Frame = -1
Query: 514 RPTNGADGP*SSSANIR*RMKCRASATPALRPPSDETN*THDSG---GTTLGRNRNKQT* 344
R + G+ P S ++ R R R+ A +R PS T T G+ G T
Sbjct: 418 RSSFGSIAPPSRTSTRRSRSTPRSRAGSRIRTPSTSTTTTSSRASFRGSARGTRTTTTTK 477
Query: 343 KCVLTGNCDRNPSGTTK 293
KCV + RN S TTK
Sbjct: 478 KCVTRKSRGRNGSNTTK 494
>SB_11275| Best HMM Match : Pkinase_Tyr (HMM E-Value=0.0005)
Length = 256
Score = 31.9 bits (69), Expect = 0.37
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 417 GGLSAGVADALHFIRYRMFADED-HGPSAPLVGRHG 521
G + AGVADALHFI R F D G + L G G
Sbjct: 181 GSIFAGVADALHFIHGRGFVHNDLKGNNVVLEGEAG 216
>SB_30078| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 528
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 199 RPVFFELCQPDTAKTCNGSEYVGTFTCTSSY 291
+P F E C+ D NGS+ G C +S+
Sbjct: 275 KPAFVEKCKQDLRLCLNGSDVAGKLKCVASF 305
>SB_12940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 250 GSEYVGTF-TCTSSYSWWYQMDSYRSFPSG 336
GSE+V T T T SW+ D+Y+ PSG
Sbjct: 10 GSEFVSTLQTLTRRQSWFSVTDAYKKSPSG 39
>SB_48675| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1329
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/72 (22%), Positives = 29/72 (40%)
Frame = +3
Query: 333 RTHFYVCLLRFLPSVVPPESCVQLVSSLGGLSAGVADALHFIRYRMFADEDHGPSAPLVG 512
+ HF C ++ ++ G ++A + + +RY A HGP P+V
Sbjct: 572 KEHFQKCCDALKEHLIALNKDIRFNEMQGHINAAIGNIQATMRYERLAG--HGPKYPVVS 629
Query: 513 RHGWCCCRFIDL 548
R CR+ +
Sbjct: 630 RRYPLVCRYFTM 641
>SB_38732| Best HMM Match : Integrin_alpha (HMM E-Value=0.47)
Length = 169
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 330 VRTHFYVCLLRFLPSVVPPESCVQLVSSLGGLSAGVADALHFIRYRMF 473
+R F+V L R +P V +L +LGG + + LHF+ R+F
Sbjct: 71 IRHPFFVELRRDMPHEVF-HGFTRLAKTLGGFAHNKEEVLHFLSIRLF 117
>SB_28287| Best HMM Match : DUF202 (HMM E-Value=1.8)
Length = 206
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 286 SYSWWYQMDSYRSFPSGHTSMSVYCGFFLA 375
+Y++W ++D+ SF H + +Y FLA
Sbjct: 165 NYAFWTKLDASSSFTLSHEHLDIYVMTFLA 194
>SB_9858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 127 RTYLYGLLMNLCIIEVMKGIVGNPRPVFFELCQPDTAKTCNGSEYVGTFTCTSSYSW 297
RT + LL+NL I + I PR +F+EL + +Y+ F + SW
Sbjct: 42 RTQINLLLVNLAISDTTFAIFFTPRKLFYELISRGNQEGI-ARDYMCKFLTYGNLSW 97
>SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 27.5 bits (58), Expect = 7.9
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = -1
Query: 514 RPTNGADGP*SSSANIR*RMKCRASATPALRPPSDETN*TH--DSGGTTLGRNRNKQT*K 341
R + G+ P ++ R R R+ A +R PS T + S + G T K
Sbjct: 192 RSSLGSIAPPPRTSTPRSRSTLRSRAGSRIRTPSTPTTTSSRASSRESARGTRTTTTTKK 251
Query: 340 CVLTGNCDRNPSGTTK 293
CV + RN S TTK
Sbjct: 252 CVTRKSRGRNGSNTTK 267
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,476,306
Number of Sequences: 59808
Number of extensions: 404667
Number of successful extensions: 977
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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