Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_I15
(558 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198 32 0.27
07_03_1482 - 26864793-26865043,26865325-26865454,26865564-268657... 30 1.4
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 30 1.4
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 29 3.3
02_01_0281 - 1879519-1879605,1880761-1880851,1881343-1881849,188... 28 4.4
08_02_1131 + 24523435-24523447,24526425-24527509 28 5.8
08_01_0632 - 5479118-5479555,5479701-5479866,5480452-5480565,548... 28 5.8
03_02_0039 - 5213699-5214775,5214815-5215093,5215300-5215776,521... 28 5.8
02_01_0397 - 2877242-2878479,2878557-2878861,2879862-2880549,288... 27 7.7
>01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198
Length = 683
Score = 32.3 bits (70), Expect = 0.27
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 176 KPQKHSLKLTVVSAPKYEQKPEKVIVVKHGQDVTIPCKVTGLPAP 310
+P +H ++ + +P ++ E + + HG D + C TG PAP
Sbjct: 77 QPLEHGVEDEIDGSPYHDALGEHYVGILHGVDASPACSRTGAPAP 121
>07_03_1482 -
26864793-26865043,26865325-26865454,26865564-26865771,
26867529-26867599,26867875-26867884,26869562-26870310
Length = 472
Score = 29.9 bits (64), Expect = 1.4
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Frame = +2
Query: 209 VSAPKYEQKPEKVIVVKHGQDVTIPCKVTGLPAPKVVWSHNA--KPLSGGRATVSDSGLV 382
V A + + E V+VV GQDV CK G ++ S N+ K + G +S G
Sbjct: 370 VDAKDFAGECEAVVVVAKGQDVQGTCKY-GTRVDYILASPNSPYKFVPGSYTVISSKGTS 428
Query: 383 IKGVQKGDTGYYGCRATNEHGDXYFETLLQVN 478
+ K D + T+E + ++++N
Sbjct: 429 DHHIVKVDVTIQDKKETDEESGNQRQRVVKIN 460
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 29.9 bits (64), Expect = 1.4
Identities = 25/91 (27%), Positives = 41/91 (45%)
Frame = +2
Query: 71 RITRHNRTSGKRLLFKTTLPEDEGEYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVI 250
RI R R +RL +P ++T +D +G ++ LK A + +K I
Sbjct: 56 RIQRQRRVLKQRL----KVPPALNQFTRTLDKNLGCQKERLLKRAQAEAEGKTVEAKKPI 111
Query: 251 VVKHGQDVTIPCKVTGLPAPKVVWSHNAKPL 343
VVK+G D + + A VV +H+ P+
Sbjct: 112 VVKYGLD-HVTYLIEQSKAQLVVIAHDVDPI 141
>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +2
Query: 302 PAPKVVWSHNAKPLSGGRATVSDSGLVIKGVQKGDTG 412
PAPK V S A SG + SDSG +G D G
Sbjct: 1206 PAPKAVQSQPAPKRSGDGGSSSDSGSSKEGGSSSDRG 1242
>02_01_0281 -
1879519-1879605,1880761-1880851,1881343-1881849,
1881939-1882009,1882102-1882181,1882287-1882464
Length = 337
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -3
Query: 187 LLGFADSIVDFASVFALVFWECCLEEKTLA*GSIVAGDTVFRVSVHVLTILEVVRMSQRV 8
LLGF++ V S F LVF +E G + + R+ V I+E +S +
Sbjct: 164 LLGFSEGNVQETSEFDLVFLHVAMENTNSKLGKLGMKTDLNRLDKLVGAIMEAAPISSAI 223
Query: 7 AS 2
AS
Sbjct: 224 AS 225
>08_02_1131 + 24523435-24523447,24526425-24527509
Length = 365
Score = 27.9 bits (59), Expect = 5.8
Identities = 21/72 (29%), Positives = 29/72 (40%)
Frame = -2
Query: 341 EASRYGSRRPWALADRSPCTES*HPVRVSQRSPFQASARTSVH*LQSISKSAFGVCRLHC 162
EA R G R P+ + P RV+ PF A+A +V L ++ +
Sbjct: 147 EAVRVGERLPFYFPAATTSALGFLPRRVADSIPFTAAALPAVLALFGVAPDTAEAAGMRE 206
Query: 161 RLRKCIRPRLLG 126
LR C P L G
Sbjct: 207 TLRTCEWPTLAG 218
>08_01_0632 -
5479118-5479555,5479701-5479866,5480452-5480565,
5480713-5480849
Length = 284
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -3
Query: 148 VFALVFWEC-CLEEKTLA*GSIVAGDTVFRVSVHVLTILEV 29
VF +C CLE+ + G + G+T F +SV V + E+
Sbjct: 106 VFTEFISKCPCLEDLVVEEGGFIGGETGFTLSVEVTEMTEI 146
>03_02_0039 -
5213699-5214775,5214815-5215093,5215300-5215776,
5216073-5216438
Length = 732
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 242 KVIVVKHGQDVTIPCKVTGLPAPKVVWSHNAKPLSGGRATVS 367
+ +VVKHG+ VT P + + H +PLSG A V+
Sbjct: 265 QAVVVKHGEAVTPPSRQDA--TKNITDVHKHQPLSGEHAIVA 304
>02_01_0397 -
2877242-2878479,2878557-2878861,2879862-2880549,
2881998-2882016
Length = 749
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = +2
Query: 2 GSNPLAHPNYFKNGKDVNG-----NPEDRITRHNRTSGKR 106
GS P P Y +NGKD++G P D I ++ + +R
Sbjct: 598 GSIPPTAPRYMENGKDISGRSLKAKPGDNILQNGSSKPER 637
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,140,003
Number of Sequences: 37544
Number of extensions: 323704
Number of successful extensions: 878
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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