Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_I15
(558 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 33 0.098
At1g55350.4 68414.m06326 calpain-type cysteine protease family i... 29 2.8
At1g55350.3 68414.m06325 calpain-type cysteine protease family i... 29 2.8
At1g55350.2 68414.m06324 calpain-type cysteine protease family i... 29 2.8
At1g55350.1 68414.m06323 calpain-type cysteine protease family i... 29 2.8
At3g43530.1 68416.m04621 hypothetical protein contains Pfam prof... 28 4.9
At4g36105.1 68417.m05139 expressed protein 27 6.4
At1g54070.1 68414.m06161 dormancy/auxin associated protein-related 27 6.4
At5g28810.1 68418.m03542 hypothetical protein 27 8.5
At3g27970.1 68416.m03491 exonuclease family protein contains exo... 27 8.5
At1g50980.1 68414.m05731 F-box family protein contains F-box dom... 27 8.5
>At5g24280.1 68418.m02856 expressed protein ; expression supported by
MPSS
Length = 1634
Score = 33.5 bits (73), Expect = 0.098
Identities = 21/67 (31%), Positives = 35/67 (52%)
Frame = +2
Query: 122 TLPEDEGEYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKHGQDVTIPCKVTGL 301
+LPE+EG ++C V + + S+K+ V SAP E++ E H + T P +G+
Sbjct: 1199 SLPENEGVFSCRVFHSRYPELQMSIKIQVTSAPTSERE-ESGYSTPHSK--TTPPPESGI 1255
Query: 302 PAPKVVW 322
P+ W
Sbjct: 1256 PSITNPW 1262
>At1g55350.4 68414.m06326 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 351 PPLRGFALWLQTTLGAGRPVTLHGIVTSCP 262
P ++GF LW+ L AG ++L I+++ P
Sbjct: 757 PRIKGFILWICVVLFAGSVISLGAIISAKP 786
>At1g55350.3 68414.m06325 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 351 PPLRGFALWLQTTLGAGRPVTLHGIVTSCP 262
P ++GF LW+ L AG ++L I+++ P
Sbjct: 757 PRIKGFILWICVVLFAGSVISLGAIISAKP 786
>At1g55350.2 68414.m06324 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 351 PPLRGFALWLQTTLGAGRPVTLHGIVTSCP 262
P ++GF LW+ L AG ++L I+++ P
Sbjct: 757 PRIKGFILWICVVLFAGSVISLGAIISAKP 786
>At1g55350.1 68414.m06323 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 351 PPLRGFALWLQTTLGAGRPVTLHGIVTSCP 262
P ++GF LW+ L AG ++L I+++ P
Sbjct: 757 PRIKGFILWICVVLFAGSVISLGAIISAKP 786
>At3g43530.1 68416.m04621 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 615
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +2
Query: 26 NYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGEYTCEVDNGVGK 178
N + G D NG +R R T + + + + GE E+D VG+
Sbjct: 427 NELEEGSDANGGDNEREVREKETEIDKEVAQGDNEREVGEKETEIDKEVGQ 477
>At4g36105.1 68417.m05139 expressed protein
Length = 245
Score = 27.5 bits (58), Expect = 6.4
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 30 TSRMVRT*TETLKTVSPATIEPQASVFSS-RQHSQKTRANTLAKST 164
T R+V T E+LK A+ ++ SS R+H Q A +AKST
Sbjct: 149 TERIVMTECESLKNALTASNNVLDTLLSSSRRHFQTIEARLVAKST 194
>At1g54070.1 68414.m06161 dormancy/auxin associated protein-related
Length = 123
Score = 27.5 bits (58), Expect = 6.4
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = +2
Query: 161 DNGVGKPQKHSLKLTVVSAP---KYEQKPEKVIVVKHGQDVTIPCKVTGLP-APKVVWSH 328
DNG+GK +KH TV S+P +Q ++V K +V K+ P +P S+
Sbjct: 18 DNGLGKLRKHDSLSTVRSSPPSLSSDQVTRSIMVTKGNNNVRGLRKLKMDPDSPTCSSSN 77
Query: 329 NAKPLSGG 352
PL+ G
Sbjct: 78 PGTPLTPG 85
>At5g28810.1 68418.m03542 hypothetical protein
Length = 560
Score = 27.1 bits (57), Expect = 8.5
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 86 NRTSGKRLLFKTTLPEDEGEYTCEVDNGVGKPQKHSLKLTVVSAPKYE-QKPEK 244
N+ +G ++L K + + + + VGKP K +K TVV K + KPEK
Sbjct: 440 NKEAGTKVLTKKKVAKSDKKKIIVNVEKVGKP-KPEMKKTVVKVEKVDSSKPEK 492
>At3g27970.1 68416.m03491 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 354
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 182 GVCRLHCRLRKCIRPRLLGVLS*RE 108
GVC+ HCR + +R L+G L +E
Sbjct: 47 GVCKKHCRSFESLREHLIGPLPKQE 71
>At1g50980.1 68414.m05731 F-box family protein contains F-box domain
Pfam:PF00646
Length = 370
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 384 MTRPLSLTVALPPLRGFALWLQTTLGAGRPVTLHGIVTSCP 262
+T + T+ +P LR L + T G RP +HG V + P
Sbjct: 164 LTNVMIFTIDVPTLR--ILSIDNTSGKSRPKGVHGFVINTP 202
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,991,993
Number of Sequences: 28952
Number of extensions: 249389
Number of successful extensions: 690
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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