Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I14
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   5.0  
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...    25   8.7  

>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 262 DLLVINTIHHRSCTNFIMTF 203
           ++LV+ + HH++  NFI TF
Sbjct: 431 EILVMKSHHHKNIVNFIDTF 450


>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +2

Query: 101 MLSINFVEYWNVTLYINQIYSQ--HRFPNIMYFLLLKCHNKVRTRS 232
           ++SI + +++    ++   Y Q  HRFP  +  L ++ + K  TRS
Sbjct: 327 LISIWYSDFFGAQTHLVAPYDQYLHRFPAYLQQLSMESNGKAITRS 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,756,427
Number of Sequences: 5004
Number of extensions: 30893
Number of successful extensions: 74
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)