Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I14
         (511 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0213 + 6480521-6480644,6482347-6482499,6482582-6482980,648...    28   5.0  
03_02_0913 + 12344096-12344125,12344284-12345970,12346243-123465...    27   8.8  

>03_02_0213 +
           6480521-6480644,6482347-6482499,6482582-6482980,
           6483158-6483234,6483990-6485312
          Length = 691

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 256 LVINTIHHRSCTNFIMTFQ*EEIHNIWEPMLR 161
           +V+  I H +C   I   + EE+ NIW+ ++R
Sbjct: 102 IVMKGIKHGACDYLIKPVRMEELKNIWQHVIR 133


>03_02_0913 +
           12344096-12344125,12344284-12345970,12346243-12346573,
           12346712-12347567,12347760-12347883,12348469-12348688,
           12348771-12349229,12349318-12349519
          Length = 1302

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 28  KNVFIQIHNLAVLYYL 75
           KN+FIQ H LA +Y+L
Sbjct: 178 KNLFIQFHRLAYVYFL 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,359,933
Number of Sequences: 37544
Number of extensions: 141849
Number of successful extensions: 267
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)