Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I14
         (511 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62590.1 68416.m07031 lipase class 3 family protein contains ...    28   3.2  
At2g01760.1 68415.m00106 two-component responsive regulator fami...    28   4.2  

>At3g62590.1 68416.m07031 lipase class 3 family protein contains
           Pfam profile PF01764: Lipase
          Length = 649

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 461 VF*TPFRYLIQYTYLISLHQERENFNFFK 375
           +F  P R LI   Y +  H  + +F+FFK
Sbjct: 621 IFFLPIRLLIMSVYSVVFHHSQAHFSFFK 649


>At2g01760.1 68415.m00106 two-component responsive regulator family
           protein / response regulator family protein similar to
           response regulator 9 (GI:14189890) [Zea mays]; similar
           to ARR1 protein (GI:4210449) [Arabidopsis thaliana];
           contains Pfam profile: PF00072 response regulator
           receiver domain
          Length = 382

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 253 VINTIHHRSCTNFIMTFQ*EEIHNIWEPMLR 161
           V+  I+H +C   I   + EE+ NIW+ ++R
Sbjct: 99  VMTGINHGACDYLIKPIRPEELKNIWQHVVR 129


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,284,391
Number of Sequences: 28952
Number of extensions: 134593
Number of successful extensions: 225
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)