Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I13
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0096 - 31627332-31627570,31628467-31628743,31628963-316291...    29   2.5  
03_01_0600 - 4419917-4419967,4420081-4420287,4420386-4420560,442...    29   2.5  
05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281     29   3.4  
04_04_0156 + 23160681-23160862,23161090-23161179,23163145-231634...    29   3.4  
06_01_0469 + 3322886-3323564,3324033-3324953,3325025-3325155,332...    28   5.9  
10_08_0355 - 17131178-17131268,17131376-17131429,17131521-171316...    27   7.7  

>03_06_0096 -
           31627332-31627570,31628467-31628743,31628963-31629118,
           31629205-31629381,31629543-31629745,31630680-31630995
          Length = 455

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 185 YWQENADLYEEEVTKDYQRSYEIVLAMCS 271
           ++ EN      +V KDY RS  +V+A C+
Sbjct: 184 FYNENGGFKVSDVDKDYMRSCSVVVATCA 212


>03_01_0600 -
           4419917-4419967,4420081-4420287,4420386-4420560,
           4420677-4420708,4421179-4421280,4421406-4421552
          Length = 237

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +3

Query: 96  SYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSSPCAR 272
           +Y   R+       RK+ +   R L+ +  +  +TP  MK+K +RII   +   SP  R
Sbjct: 11  AYEAARERTVEENKRKMEALNLRHLSAAIAVAPKTPSPMKQKRRRIIEAAVVAPSPPRR 69


>05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281
          Length = 518

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 126 NRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLS 257
           NR+ R L++  +++    E I +    CMKK+   ++N L  +S
Sbjct: 39  NRLLRSLVNIHEQETYSREIITEAIESCMKKQADNLVNTLDVIS 82


>04_04_0156 +
           23160681-23160862,23161090-23161179,23163145-23163433,
           23164574-23164669,23164755-23165123
          Length = 341

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = +1

Query: 253 CPRHVLGAAPKPFDKHTFMPSALDFYQTALRDPAFYQLYXRIVGYINAFKHYLKPYP--Q 426
           CP+  L  A +    H  +   L+ YQ  LR P+ +Q   R +G  ++ +    P P  Q
Sbjct: 194 CPQE-LEPADRRTPVHVNVIKRLEDYQAPLRPPSPFQGVGRTLGGGSSAEESQAPAPATQ 252

Query: 427 EKLHFVGVXIND 462
           E    VG+ ++D
Sbjct: 253 EPRRSVGIVVDD 264


>06_01_0469 +
           3322886-3323564,3324033-3324953,3325025-3325155,
           3325237-3325317,3328173-3328820
          Length = 819

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 71  TVLLRSSLRCVDCSCPAFERMG 6
           TVLL +S   + C C  FERMG
Sbjct: 388 TVLLDTSTMEISCGCRKFERMG 409


>10_08_0355 -
           17131178-17131268,17131376-17131429,17131521-17131663,
           17131812-17132096,17132168-17132301,17132383-17132556,
           17132639-17132707,17132814-17132878,17133441-17133589,
           17133747-17133989,17134119-17134255,17134340-17134561,
           17134661-17134827,17136680-17136819
          Length = 690

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +2

Query: 29  NYNLHSV---KNYEAIRFLDIFEKTFVQSLQK 115
           NYN+  V   KN+ A+R  DIF KT  +  +K
Sbjct: 521 NYNIAIVSLKKNFNAVRLEDIFSKTVQEPSEK 552


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,545,304
Number of Sequences: 37544
Number of extensions: 265752
Number of successful extensions: 675
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)