Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_I13
(560 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.28
SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22) 29 2.6
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11) 28 4.5
SB_59338| Best HMM Match : ATP-synt_F (HMM E-Value=2.1) 28 6.0
SB_45286| Best HMM Match : GRIP (HMM E-Value=3.6e-08) 27 7.9
>SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 32.3 bits (70), Expect = 0.28
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 316 ALDFYQTALRDPAFYQLYXRIVGYINAFKHYLKPYPQEKLHFVGVXINDVVVEKLVTFFD 495
AL + ALR P ++Y + ++ FK LK YP H + + L+ + D
Sbjct: 180 ALRYVLDALRKPYGSKMYMFGIAALDRFKTRLKDYPHYCQHLASIPHFKEFPQSLIEYID 239
Query: 496 YSQ 504
Y Q
Sbjct: 240 YGQ 242
>SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1548
Score = 31.1 bits (67), Expect = 0.64
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 257 LAMCSVQHLNHSTSTPSCPVRLTFTKPHFET 349
L+ CS+Q L +T T P+R++F++PH T
Sbjct: 1421 LSTCSLQSLTDNT-TSERPIRISFSEPHLHT 1450
>SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -1
Query: 164 PFHRGNQFSCHTIRICLSVGTVRKSFQKCPRTVLL-RSSLRCVDC 33
P H NQ C IC+ G KS KCP L S RC C
Sbjct: 245 PCHEANQGGCEGRAICVYTGP-GKSICKCPPGYKLDESQARCTLC 288
>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
Length = 2269
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
Frame = +2
Query: 107 LQKGKFE-----SYGKKIDFHDEKAINFVGNYWQENADL--YEEEVTKDYQ 238
L+KGKF+ S K ID E+ F+G+ W ++ DL +++E K+ Q
Sbjct: 1093 LEKGKFQVKQWCSNSKTIDKSCERYCTFLGHKWDKDRDLLTFKKEKIKETQ 1143
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 17 QRPDNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHD 157
Q+P+N++LH +A+ T L GKF+S G+ D H+
Sbjct: 4733 QKPNNHHLHRTCKADALEV----NVTLRGGLHAGKFKSVGRTRDVHE 4775
>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
Length = 129
Score = 28.3 bits (60), Expect = 4.5
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +2
Query: 278 HLNHSTSTPSCPVRLTFTKPHFETLHSISYXTGLWVTLTHSSIT*SLILKRNFISSAXKS 457
+L HST T S L T T ++++ T + TLTH +IT S I
Sbjct: 26 NLTHSTLTHSNLTHLNLTHSTL-TYSTLTHLTLTYSTLTHLTITYSTITHSTLTHLTLTH 84
Query: 458 MMLSLRN*SHS-LTIANLMPLTV 523
+ L+ +HS LT + L T+
Sbjct: 85 LTLTYSTLTHSTLTHSTLTHSTL 107
Score = 28.3 bits (60), Expect = 4.5
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +2
Query: 281 LNHSTSTPSCPVRLTFTKPHFETLH-SISYXTGLWVTLTHSSIT*SLILKRNFISSAXKS 457
L H T T S T T H H +++Y T TLTHS++T S + S
Sbjct: 62 LTHLTITYSTITHSTLT--HLTLTHLTLTYSTLTHSTLTHSTLTHSTLTHSTLTHSTITH 119
Query: 458 MMLSLRN*SH 487
L+ N +H
Sbjct: 120 STLTHSNLTH 129
Score = 27.9 bits (59), Expect = 6.0
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Frame = +2
Query: 257 LAMCSVQHLN--HSTSTPSCPVRLTFTKP---HFETLHS-ISYXTGLWVTLTHSSIT*SL 418
L ++ HLN HST T S LT T H +S I++ T +TLTH ++T S
Sbjct: 32 LTHSNLTHLNLTHSTLTYSTLTHLTLTYSTLTHLTITYSTITHSTLTHLTLTHLTLTYST 91
Query: 419 ILKRNFISSAXKSMMLSLRN*SHS 490
+ S L+ +HS
Sbjct: 92 LTHSTLTHSTLTHSTLTHSTLTHS 115
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 356 SISYXTGLWVTLTHSSIT*SLILKRNFISSAXKSMMLSLRN*SHS-LTIANLMPLTV 523
++++ T + +TLTHS++T + N S L+ N +HS LT + L LT+
Sbjct: 1 TLTHPTLIHLTLTHSNLTHLTLTHSNLTHSTLTHSNLTHLNLTHSTLTYSTLTHLTL 57
>SB_59338| Best HMM Match : ATP-synt_F (HMM E-Value=2.1)
Length = 208
Score = 27.9 bits (59), Expect = 6.0
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = +2
Query: 194 ENADLYEEEVTKDYQRSYEIVLAMCSVQH 280
+N ++ +V K Y+R++ + A+C ++H
Sbjct: 29 DNEIMHHRQVQKKYKRAFAVTHAVCGIRH 57
>SB_45286| Best HMM Match : GRIP (HMM E-Value=3.6e-08)
Length = 800
Score = 27.5 bits (58), Expect = 7.9
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = +2
Query: 158 EKAINFVGNYWQ-ENADLYEEEVTKDYQRSYEIVLAMCSVQHLNHSTSTPSCPVRLTFTK 334
EK+ + NY LY E K ++ + A+ + + +N S +TPS PV T
Sbjct: 696 EKSCLILRNYCTLAMVKLYSEFQDKKTIKNAFAIFAVVAFEQVNTSHNTPSEPVE-TPKS 754
Query: 335 PHF--ETLHSISYXTGLWV 385
P E LH + + +W+
Sbjct: 755 PDTTKELLHDLKWKKAVWL 773
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,238,622
Number of Sequences: 59808
Number of extensions: 327835
Number of successful extensions: 994
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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