Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_I13
(560 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX538345-1|CAD98108.1| 1582|Homo sapiens hypothetical protein pr... 33 0.91
BX537840-1|CAD97851.1| 2150|Homo sapiens hypothetical protein pr... 31 3.7
BC040523-1|AAH40523.1| 1551|Homo sapiens CCR4-NOT transcription ... 31 3.7
BC024317-1|AAH24317.1| 1620|Homo sapiens CNOT1 protein protein. 31 3.7
AB023224-1|BAA76851.2| 1835|Homo sapiens KIAA1007 protein protein. 31 3.7
BC101535-1|AAI01536.1| 545|Homo sapiens transcription elongatio... 29 8.5
BC093639-1|AAH93639.1| 545|Homo sapiens transcription elongatio... 29 8.5
BC042951-1|AAH42951.1| 545|Homo sapiens transcription elongatio... 29 8.5
AL390203-2|CAH74038.1| 545|Homo sapiens transcription elongatio... 29 8.5
AL390203-1|CAH74037.1| 225|Homo sapiens transcription elongatio... 29 8.5
>BX538345-1|CAD98108.1| 1582|Homo sapiens hypothetical protein
protein.
Length = 1582
Score = 32.7 bits (71), Expect = 0.91
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +1
Query: 262 HVLGAAPKPFDKHTFMPSALDFYQTALRDPAFYQLYXRIVGYINAFKHYLK-PYPQEKLH 438
H+ APK FD+ T + +D + D YQ Y RI+ I A + P E LH
Sbjct: 1337 HLYAWAPKSFDESTAIKVCIDQSADSEGDYMSYQAYIRILAKIQAADPVNRFKRPDELLH 1396
Query: 439 FVGVXINDVVVEKLVT 486
+ + + + K VT
Sbjct: 1397 LLKLKVFPTLDHKPVT 1412
>BX537840-1|CAD97851.1| 2150|Homo sapiens hypothetical protein
protein.
Length = 2150
Score = 30.7 bits (66), Expect = 3.7
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 316 ALDFYQTALRDPAFYQLYXRIVGYINAFKHYLKPYPQEKLHFVGVXINDVVVEKLVTFFD 495
AL + ALR P ++Y + ++ FK+ LK YPQ H + L + +
Sbjct: 929 ALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIE 988
Query: 496 YSQ 504
Y Q
Sbjct: 989 YGQ 991
Score = 30.7 bits (66), Expect = 3.7
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +1
Query: 259 RHVLGAAPKPFDK--HTFMPSALDFYQTALRDPAFYQLYXRIVGYINAFKHYLKPY 420
R+VL A KPF + F +ALD ++ L+D Y + + + F H+L+ Y
Sbjct: 931 RYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEY 986
>BC040523-1|AAH40523.1| 1551|Homo sapiens CCR4-NOT transcription
complex, subunit 1 protein.
Length = 1551
Score = 30.7 bits (66), Expect = 3.7
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 316 ALDFYQTALRDPAFYQLYXRIVGYINAFKHYLKPYPQEKLHFVGVXINDVVVEKLVTFFD 495
AL + ALR P ++Y + ++ FK+ LK YPQ H + L + +
Sbjct: 934 ALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIE 993
Query: 496 YSQ 504
Y Q
Sbjct: 994 YGQ 996
Score = 30.7 bits (66), Expect = 3.7
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +1
Query: 259 RHVLGAAPKPFDK--HTFMPSALDFYQTALRDPAFYQLYXRIVGYINAFKHYLKPY 420
R+VL A KPF + F +ALD ++ L+D Y + + + F H+L+ Y
Sbjct: 936 RYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEY 991
>BC024317-1|AAH24317.1| 1620|Homo sapiens CNOT1 protein protein.
Length = 1620
Score = 30.7 bits (66), Expect = 3.7
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 316 ALDFYQTALRDPAFYQLYXRIVGYINAFKHYLKPYPQEKLHFVGVXINDVVVEKLVTFFD 495
AL + ALR P ++Y + ++ FK+ LK YPQ H + L + +
Sbjct: 178 ALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIE 237
Query: 496 YSQ 504
Y Q
Sbjct: 238 YGQ 240
Score = 30.7 bits (66), Expect = 3.7
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +1
Query: 259 RHVLGAAPKPFDK--HTFMPSALDFYQTALRDPAFYQLYXRIVGYINAFKHYLKPY 420
R+VL A KPF + F +ALD ++ L+D Y + + + F H+L+ Y
Sbjct: 180 RYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEY 235
>AB023224-1|BAA76851.2| 1835|Homo sapiens KIAA1007 protein protein.
Length = 1835
Score = 30.7 bits (66), Expect = 3.7
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 316 ALDFYQTALRDPAFYQLYXRIVGYINAFKHYLKPYPQEKLHFVGVXINDVVVEKLVTFFD 495
AL + ALR P ++Y + ++ FK+ LK YPQ H + L + +
Sbjct: 393 ALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIE 452
Query: 496 YSQ 504
Y Q
Sbjct: 453 YGQ 455
Score = 30.7 bits (66), Expect = 3.7
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +1
Query: 259 RHVLGAAPKPFDK--HTFMPSALDFYQTALRDPAFYQLYXRIVGYINAFKHYLKPY 420
R+VL A KPF + F +ALD ++ L+D Y + + + F H+L+ Y
Sbjct: 395 RYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEY 450
>BC101535-1|AAI01536.1| 545|Homo sapiens transcription elongation
regulator 1-like protein.
Length = 545
Score = 29.5 bits (63), Expect = 8.5
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -1
Query: 296 LSNGLGAAPSTWRGQFHKIVDNPL*LLLHTDRR 198
L G+ A STW + HKIV +P LLL+++ R
Sbjct: 421 LERGVSAF-STWEKELHKIVFDPRYLLLNSEER 452
>BC093639-1|AAH93639.1| 545|Homo sapiens transcription elongation
regulator 1-like protein.
Length = 545
Score = 29.5 bits (63), Expect = 8.5
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -1
Query: 296 LSNGLGAAPSTWRGQFHKIVDNPL*LLLHTDRR 198
L G+ A STW + HKIV +P LLL+++ R
Sbjct: 421 LERGVSAF-STWEKELHKIVFDPRYLLLNSEER 452
>BC042951-1|AAH42951.1| 545|Homo sapiens transcription elongation
regulator 1-like protein.
Length = 545
Score = 29.5 bits (63), Expect = 8.5
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -1
Query: 296 LSNGLGAAPSTWRGQFHKIVDNPL*LLLHTDRR 198
L G+ A STW + HKIV +P LLL+++ R
Sbjct: 421 LERGVSAF-STWEKELHKIVFDPRYLLLNSEER 452
>AL390203-2|CAH74038.1| 545|Homo sapiens transcription elongation
regulator 1-like protein.
Length = 545
Score = 29.5 bits (63), Expect = 8.5
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -1
Query: 296 LSNGLGAAPSTWRGQFHKIVDNPL*LLLHTDRR 198
L G+ A STW + HKIV +P LLL+++ R
Sbjct: 421 LERGVSAF-STWEKELHKIVFDPRYLLLNSEER 452
>AL390203-1|CAH74037.1| 225|Homo sapiens transcription elongation
regulator 1-like protein.
Length = 225
Score = 29.5 bits (63), Expect = 8.5
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -1
Query: 296 LSNGLGAAPSTWRGQFHKIVDNPL*LLLHTDRR 198
L G+ A STW + HKIV +P LLL+++ R
Sbjct: 101 LERGVSAF-STWEKELHKIVFDPRYLLLNSEER 132
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,439,727
Number of Sequences: 237096
Number of extensions: 1553705
Number of successful extensions: 3344
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3344
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5646880600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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