Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I13
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64599-5|AAM69110.1|  303|Caenorhabditis elegans Unidentified vi...    31   0.57 
Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical pr...    30   0.99 
AF273836-1|AAG15184.1|  362|Caenorhabditis elegans nuclear recep...    29   2.3  
AC024776-15|AAK68482.2|  354|Caenorhabditis elegans Nuclear horm...    29   2.3  
U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore co...    28   5.3  
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co...    28   5.3  
U41554-3|AAA83298.2|  745|Caenorhabditis elegans Nematode astaci...    28   5.3  
Z81072-10|CAB03028.1|  423|Caenorhabditis elegans Hypothetical p...    27   7.0  
Z81072-9|CAB03025.1|  440|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr...    27   7.0  
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch...    27   7.0  
U58757-2|AAC47915.2|  402|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>U64599-5|AAM69110.1|  303|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 5, isoform c
           protein.
          Length = 303

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
 Frame = +2

Query: 95  FVQSLQKGKFESYGKKIDFH--DEKAINFVGNY--WQENADLYEEEVTKDYQRSYEIVLA 262
           F+ ++  G F +Y      +  + K ++F+G+   W  +A ++  E  + +Q+ Y     
Sbjct: 184 FIYNMTAGAFYTYAAAYKRYGANTKIVHFIGSVKPWHGSAAVHTGEHFQQWQKIYHA--- 240

Query: 263 MCSVQHLNHSTSTPSCPVRLTFTK 334
                H+NH+T+   CP  + F +
Sbjct: 241 -----HVNHTTNNTPCPAFVPFER 259


>Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical
           protein F46F3.4 protein.
          Length = 769

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
 Frame = +2

Query: 104 SLQKGKFESYGKKIDFHDEK----AINFVGNYWQENADLYEEEVTKDYQRSYEIVLAMCS 271
           S Q  K E + +K D + +     AI+  G++ +   +       K+ Q+ Y  +  M S
Sbjct: 280 SPQMMKSEEFSEKRDLNGQTGSYDAIDGSGDHQKIPTEPSYLAPCKENQQKYSELSKMAS 339

Query: 272 VQ-HLNHS---TSTPSCPVRLTFTKPHFE 346
              H NHS   TS+   P  +TF+ P FE
Sbjct: 340 TDPHSNHSSPSTSSQKAPTLITFSPPSFE 368


>AF273836-1|AAG15184.1|  362|Caenorhabditis elegans nuclear receptor
           NHR-92 protein.
          Length = 362

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 155 RGNQFSCHTIRICLSVGTVRKSFQKCPRT 69
           RG+++ C  +  CL V T+R   +KC  T
Sbjct: 43  RGHEYRCKQMENCLIVSTIRNMCKKCRYT 71


>AC024776-15|AAK68482.2|  354|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 92 protein.
          Length = 354

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 155 RGNQFSCHTIRICLSVGTVRKSFQKCPRT 69
           RG+++ C  +  CL V T+R   +KC  T
Sbjct: 35  RGHEYRCKQMENCLIVSTIRNMCKKCRYT 63


>U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform b protein.
          Length = 889

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 284 NHSTSTPSCPVRLTFTKPHFETLHSISYXT--GLWVTLTHSSIT 409
           +HS STP  P+R + T  H  + ++ISY T  G  V +T  S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230


>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform a protein.
          Length = 1562

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 284 NHSTSTPSCPVRLTFTKPHFETLHSISYXT--GLWVTLTHSSIT 409
           +HS STP  P+R + T  H  + ++ISY T  G  V +T  S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230


>U41554-3|AAA83298.2|  745|Caenorhabditis elegans Nematode astacin
           protease protein38 protein.
          Length = 745

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 152 HDEKAINFVGNYWQENADLYEEEV 223
           HDE A+N    Y+Q + DL E++V
Sbjct: 75  HDELAVNNADEYFQGDVDLSEQQV 98


>Z81072-10|CAB03028.1|  423|Caenorhabditis elegans Hypothetical
           protein F30A10.8b protein.
          Length = 423

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -1

Query: 311 GMKVCLSNGLGAAPSTWRGQFHKIV---DNPL*LLLHTDRRSLANSF 180
           G + CLS    +AP  WRG+  +++   DN + LL  T      +SF
Sbjct: 339 GYEACLSTSQVSAPCLWRGESCELIVNLDNGISLLSSTGEVLWQHSF 385


>Z81072-9|CAB03025.1|  440|Caenorhabditis elegans Hypothetical
           protein F30A10.8a protein.
          Length = 440

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -1

Query: 311 GMKVCLSNGLGAAPSTWRGQFHKIV---DNPL*LLLHTDRRSLANSF 180
           G + CLS    +AP  WRG+  +++   DN + LL  T      +SF
Sbjct: 339 GYEACLSTSQVSAPCLWRGESCELIVNLDNGISLLSSTGEVLWQHSF 385


>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
            K12F2.1 protein.
          Length = 1969

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +3

Query: 87   KRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDL 245
            KR+        N+ R  ++ + +M+  L  +ET  K   + +KKKL+  INDL
Sbjct: 1587 KRIQEKEEEFENTRRNHQRALESMQATLE-AETKQKEEALRIKKKLESDINDL 1638


>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
            protein.
          Length = 1969

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +3

Query: 87   KRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDL 245
            KR+        N+ R  ++ + +M+  L  +ET  K   + +KKKL+  INDL
Sbjct: 1587 KRIQEKEEEFENTRRNHQRALESMQATLE-AETKQKEEALRIKKKLESDINDL 1638


>U58757-2|AAC47915.2|  402|Caenorhabditis elegans Hypothetical
           protein C01B10.3 protein.
          Length = 402

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +2

Query: 35  NLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFVGNYWQENADLYE 214
           NL+  KN+  I++ D F  T   +++ G   S G   +  D    N  G  +    D Y 
Sbjct: 93  NLYLFKNHSDIQYYDRFSSTGYINVRSGHQHSIGS--NECDGFIQNTFGQNYTFRRDFYN 150

Query: 215 EEVTKD 232
           ++ T+D
Sbjct: 151 DDGTRD 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,148,353
Number of Sequences: 27780
Number of extensions: 250240
Number of successful extensions: 772
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)