Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I13
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53900.2 68418.m06706 expressed protein similar to unknown pr...    30   0.92 
At5g53900.1 68418.m06705 expressed protein similar to unknown pr...    30   0.92 
At5g22540.1 68418.m02630 expressed protein contains Pfam profile...    29   1.6  
At3g52970.1 68416.m05839 cytochrome P450 family protein cytochro...    29   2.1  
At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH) domain...    28   4.9  
At1g13260.1 68414.m01539 DNA-binding protein RAV1 (RAV1) identic...    28   4.9  
At1g17460.1 68414.m02141 myb family transcription factor contain...    27   6.5  

>At5g53900.2 68418.m06706 expressed protein similar to unknown
           protein (gb|AAF34833.1)
          Length = 377

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 18/76 (23%), Positives = 31/76 (40%)
 Frame = +2

Query: 176 VGNYWQENADLYEEEVTKDYQRSYEIVLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLH 355
           + NYWQ + D    E T  ++   + +  + +   L    S    P  L F     +   
Sbjct: 136 LANYWQSSFDALPPEWTDQFESGIQTIAVIQAGHGLLQLGSCKIIPEDLHFVLRMRQMFE 195

Query: 356 SISYXTGLWVTLTHSS 403
           SI Y +G +++   SS
Sbjct: 196 SIGYRSGFYLSQLFSS 211


>At5g53900.1 68418.m06705 expressed protein similar to unknown
           protein (gb|AAF34833.1)
          Length = 265

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 18/76 (23%), Positives = 31/76 (40%)
 Frame = +2

Query: 176 VGNYWQENADLYEEEVTKDYQRSYEIVLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLH 355
           + NYWQ + D    E T  ++   + +  + +   L    S    P  L F     +   
Sbjct: 24  LANYWQSSFDALPPEWTDQFESGIQTIAVIQAGHGLLQLGSCKIIPEDLHFVLRMRQMFE 83

Query: 356 SISYXTGLWVTLTHSS 403
           SI Y +G +++   SS
Sbjct: 84  SIGYRSGFYLSQLFSS 99


>At5g22540.1 68418.m02630 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 440

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 59  EAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFV 178
           EA   LD+  KTFV    + + + +  K  F+D + + FV
Sbjct: 217 EAKHLLDLIRKTFVPVPSQRRIKDHSSKSSFNDHEYLGFV 256


>At3g52970.1 68416.m05839 cytochrome P450 family protein cytochrome
           P450 76A2, eggplant, PIR:S38534
          Length = 516

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 137 KKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQRSYEIVL 259
           +K  FH EKA    G + +E  ++ E E + +  + Y  VL
Sbjct: 242 RKTQFHVEKAFEIAGEFIRERTEVREREKSDEKTKDYLDVL 282


>At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain; similar
           to  Chain B, Crystal Structure Of N-Terminal Domain Of
           Drosophila Ap180 (GP:13399617) [Drosophila
           melanogaster]; supporting cDNA
           gi|20465326|gb|AY096427.1|
          Length = 601

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
 Frame = +1

Query: 349 PAFYQLYXRIVGYI---NAFKHYLKPYPQE---KLHF-VGVXINDVVVEKLVTFFDYSQF 507
           PA  QL  R++G     +A+ +YL  Y      K  F +   IND ++  +  FF+ S+ 
Sbjct: 200 PALQQLLYRLIGCQPEGSAYSNYLIQYALALVLKESFKIYCAINDGIINLVDMFFEMSRH 259

Query: 508 DATNSVFLTKK 540
           DA  ++ + K+
Sbjct: 260 DAVKALNIYKR 270


>At1g13260.1 68414.m01539 DNA-binding protein RAV1 (RAV1) identical
           to SP|Q9ZWM9 DNA-binding protein RAV1 {Arabidopsis
           thaliana}, RAV1 GI:3868857 from [Arabidopsis thaliana]
          Length = 344

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 21/75 (28%), Positives = 35/75 (46%)
 Frame = +1

Query: 313 SALDFYQTALRDPAFYQLYXRIVGYINAFKHYLKPYPQEKLHFVGVXINDVVVEKLVTFF 492
           SA   ++ A+      +L   ++   +A KH+  P P   +   GV +N   V   V  F
Sbjct: 183 SAEALFEKAVTPSDVGKLNRLVIPKHHAEKHF--PLPSSNVSVKGVLLNFEDVNGKVWRF 240

Query: 493 DYSQFDATNSVFLTK 537
            YS ++++ S  LTK
Sbjct: 241 RYSYWNSSQSYVLTK 255


>At1g17460.1 68414.m02141 myb family transcription factor contains
           Pfam PF00249: Myb-like DNA-binding domain
          Length = 604

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = +3

Query: 69  GSWTFLKRLSYSPYRKANSNRMARKLISTMKRQLT--LSETIGKRTPICMKKKLQRIIND 242
           G WT +K+LS+SPY    +  +  K  +  K   +  +   + K   + +   +   + +
Sbjct: 517 GKWTEIKKLSFSPYTHRTTVDLKDKWRNLQKASSSNRMEGGLKKHGSMAIPTHIMLQVRE 576

Query: 243 LMKLSSPCAR 272
           L +  SP +R
Sbjct: 577 LAQKQSPISR 586


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,316,030
Number of Sequences: 28952
Number of extensions: 224774
Number of successful extensions: 614
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)