Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_I12
(506 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 124 6e-30
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 26 3.7
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 26 3.7
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 25 6.5
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo... 25 6.5
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 25 6.5
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac... 25 6.5
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 25 8.6
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 25 8.6
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po... 25 8.6
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 8.6
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 25 8.6
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 124 bits (300), Expect = 6e-30
Identities = 60/112 (53%), Positives = 78/112 (69%)
Frame = +2
Query: 167 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD*T 346
LF R ++F IGQDIQP RDLSRFV+WP+YIR+QR++ +L RLKVPP I QF +TLD
Sbjct: 26 LFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKN 85
Query: 347 TAKGLFKILEKYRPETEAVRKERLKKAAEANVCLRKNEPSPKRPNTLRAGTN 502
TA +FK+L KYRPET A +K+RL AEA + + K+P ++ G N
Sbjct: 86 TATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLN 137
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 3.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 283 VTASSQSAAANQPVHPDIRLNHSQRSV 363
++A+ AA+ +HP RLN QR+V
Sbjct: 399 MSATDSMVAASPTIHPATRLNTIQRAV 425
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 25.8 bits (54), Expect = 3.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 288 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTG 386
S V R Q+TSSP + ++PQ KV + + G
Sbjct: 182 SSVLSGRMQNTSSPTNSLRPQLKVQTNGYETPG 214
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.0 bits (52), Expect = 6.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 275 KAVLQRRLKVPPPINQFTQTLD*TTAKGLFKILE 376
KAVL LK P IN F + L + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496
>SPAC1851.03 |ckb1||CK2 family regulatory subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.0 bits (52), Expect = 6.5
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = +2
Query: 347 TAKGLFKILEKYR 385
TA+GL+K+LEKY+
Sbjct: 94 TAQGLYKMLEKYK 106
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +1
Query: 229 IPFRAMAEIYSHPASKGCVTASSQSAAANQPVHPDIRLNH 348
+ +A+ +Y+ S G V S PV+ + LNH
Sbjct: 134 VAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNH 173
>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 25.0 bits (52), Expect = 6.5
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +1
Query: 250 EIYSHPASKGCVTASSQSAAANQPVHPDIRLNHSQRSVQD 369
E++SHP GC + SS + P P + ++ V D
Sbjct: 251 EVFSHPFLMGCTSLSSMDSTT--PPTPSLSIDEIDPLVVD 288
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 24.6 bits (51), Expect = 8.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 151 EDCKPSIREENKELCY 198
E CK + + NKELCY
Sbjct: 947 EACKACLLQGNKELCY 962
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 24.6 bits (51), Expect = 8.6
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +1
Query: 52 ELKSIQDGXXXXXXXDREKSSGRSTCGEES*A-QEDCKPSIREENKELC 195
ELKS+ +G D S S C +E + KPS + K+ C
Sbjct: 215 ELKSVNEGSSCCSKKDSSPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGC 263
>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 330
Score = 24.6 bits (51), Expect = 8.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 285 NTAF*RWMRIYFGHRTKRDRSLVGWMSWPIAKF 187
N F R +R+YF + DRSL + W ++
Sbjct: 171 NANFLRQLRVYFECNYQLDRSLRPYRQWLFRRY 203
>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 215
Score = 24.6 bits (51), Expect = 8.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 318 TSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKSV 416
+ + RH + P+ ++C S RN G +S K V
Sbjct: 106 SKAQRHVLDPRCQICVHSQRNDGDDNLESDKFV 138
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 24.6 bits (51), Expect = 8.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 365 KILEKYRPETEAVRKERLKKAAEANVCLRKNEPSPKRP 478
++LEK RPE ++ + + A LRK E ++P
Sbjct: 407 QLLEKLRPEMISLNADFIGNVDRAAPSLRKAEAEEEKP 444
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,018,603
Number of Sequences: 5004
Number of extensions: 39124
Number of successful extensions: 109
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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