Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_I12
(506 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 121 4e-28
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 121 4e-28
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 91 6e-19
11_03_0212 - 11761856-11762037,11762302-11762398,11763571-117645... 29 2.1
01_05_0714 + 24555494-24555637,24555884-24556071,24556195-245562... 28 3.7
08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497 28 5.0
06_03_1040 + 27082978-27083086,27083574-27083632,27083759-270838... 28 5.0
06_03_1228 - 28563546-28563630,28563897-28564000,28564256-285647... 27 6.5
02_03_0349 + 18010414-18014283 27 8.7
01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198 27 8.7
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 121 bits (291), Expect = 4e-28
Identities = 59/112 (52%), Positives = 76/112 (67%)
Frame = +2
Query: 167 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD*T 346
LFEKR K F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD
Sbjct: 24 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 83
Query: 347 TAKGLFKILEKYRPETEAVRKERLKKAAEANVCLRKNEPSPKRPNTLRAGTN 502
A LFK+L KYRPE +A +KERL K A+A K+P ++ G N
Sbjct: 84 LATNLFKMLLKYRPEDKAAKKERLLKRAQAEA--EGKTVEAKKPIVVKYGLN 133
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 121 bits (291), Expect = 4e-28
Identities = 59/112 (52%), Positives = 76/112 (67%)
Frame = +2
Query: 167 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD*T 346
LFEKR K F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD
Sbjct: 8 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 67
Query: 347 TAKGLFKILEKYRPETEAVRKERLKKAAEANVCLRKNEPSPKRPNTLRAGTN 502
A LFK+L KYRPE +A +KERL K A+A K+P ++ G N
Sbjct: 68 LATNLFKMLLKYRPEDKAAKKERLLKRAQAEA--EGKTVEAKKPIVVKYGLN 117
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 90.6 bits (215), Expect = 6e-19
Identities = 44/85 (51%), Positives = 57/85 (67%)
Frame = +2
Query: 167 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD*T 346
LFEKR K F IG + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLD
Sbjct: 25 LFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDKN 84
Query: 347 TAKGLFKILEKYRPETEAVRKERLK 421
++L++ + E E E K
Sbjct: 85 LGCQKERLLKRAQAEAEGKTVEAKK 109
>11_03_0212 -
11761856-11762037,11762302-11762398,11763571-11764545,
11766172-11766263,11766450-11766510
Length = 468
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 188 NFAIGQDIQPTRDLSRFVRWPKYIRI-QRQKAVLQRRLKVPPP 313
N +GQD + ++ +V+ Y I Q+ + +L RLK PP
Sbjct: 352 NSCMGQDEEVVNSINSYVKQKWYAEILQKDRKILTERLKKKPP 394
>01_05_0714 +
24555494-24555637,24555884-24556071,24556195-24556280,
24556359-24556461,24556798-24557000,24557077-24557681,
24557784-24557918,24558040-24558067,24559517-24559596,
24559873-24559975,24560553-24560635,24560915-24561017,
24561596-24561720,24562001-24562103,24562647-24562726,
24563322-24563429,24563521-24563565
Length = 773
Score = 28.3 bits (60), Expect = 3.7
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Frame = +2
Query: 293 RLKVPPPINQFTQTLD*TTAKGL------FKILEKYRPETEAVRKERLKKAAEANVCLRK 454
RLK PP N+ Q +D T + F LEK + +++ R + E R
Sbjct: 103 RLKTKPPANKPVQNVDYTELLNIEDPDEYFLTLEKLERADKEIKRLRGEVPTEGTYNNRG 162
Query: 455 NEPSPKRPNTLR 490
EP RP LR
Sbjct: 163 IEPPKLRPGLLR 174
>08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497
Length = 369
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 288 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKS 413
+++ +R S++ K QP C+RSW G+ +Q G++
Sbjct: 74 TMIEDLKRSSSADTMEQTK-QPLSCARSWSTCGKSSKQRGRN 114
>06_03_1040 +
27082978-27083086,27083574-27083632,27083759-27083833,
27083908-27084024,27084207-27084277,27084432-27084732,
27084949-27085238,27085779-27085833
Length = 358
Score = 27.9 bits (59), Expect = 5.0
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = +1
Query: 244 MAEIYSHPASKGCVTASSQSAAANQPVHPDIRLNHSQRSVQDLGEIQARN*GSQERASKE 423
+A I + SK C + + NQP+ +L++ ++ + +++RN G A+K
Sbjct: 103 LAYIQNPNISKECTRTLTITEDMNQPIFVYYQLDNFYQNHRRY--VKSRNDGQLRDAAKA 160
Query: 424 SRRSQCLPKK 453
++ S C P+K
Sbjct: 161 NQTSACEPEK 170
>06_03_1228 -
28563546-28563630,28563897-28564000,28564256-28564759,
28564854-28564932,28566053-28566130,28566227-28566268,
28566352-28566449,28566542-28566673,28566757-28566879
Length = 414
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 211 PANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQ 318
P NQ P +Y+H AS G V ANQ
Sbjct: 317 PVNQGQFPPAVQTNLYNHAASSGGVREQVHLTQANQ 352
>02_03_0349 + 18010414-18014283
Length = 1289
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 365 KILEKYRPETEAVRK--ERLKKAAEANVCLRKNEPSPKRPNTLR 490
++ E+Y E V L ++A N C R + S K PNT+R
Sbjct: 522 RLFEEYYEERFVVHDLLHELARSASVNECARVSISSEKIPNTIR 565
>01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198
Length = 683
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +1
Query: 151 EDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASKGCVTASSQSA 306
ED + + E+ +L +W A S PF A P + V +SS A
Sbjct: 398 EDGRSKLTSESNQLTFWSDSQAGNGSSPFHHSAGGGMSPYYRDVVLSSSSKA 449
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,610,396
Number of Sequences: 37544
Number of extensions: 273075
Number of successful extensions: 742
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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