Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I12
         (506 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)             131   4e-31
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        41   5e-04
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.008
SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.72 
SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.72 
SB_4001| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0056)           30   1.3  
SB_54431| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_21241| Best HMM Match : ErmC (HMM E-Value=1.1)                      29   2.2  
SB_22639| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_52208| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_44491| Best HMM Match : Lipase_GDSL (HMM E-Value=4.5e-05)           27   8.9  
SB_25675| Best HMM Match : Extensin_2 (HMM E-Value=0.18)               27   8.9  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score =  131 bits (316), Expect = 4e-31
 Identities = 64/112 (57%), Positives = 79/112 (70%)
 Frame = +2

Query: 167 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD*T 346
           L EKR +NF IG DIQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD  
Sbjct: 31  LIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQ 90

Query: 347 TAKGLFKILEKYRPETEAVRKERLKKAAEANVCLRKNEPSPKRPNTLRAGTN 502
           +   LFK+L KYRPET+A +K RL   AE      K E   K+P  ++ G N
Sbjct: 91  STVQLFKLLHKYRPETKAEKKARLSAKAEKK-AEGKEEAPGKKPMLVKYGIN 141


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 22/48 (45%), Positives = 28/48 (58%)
 Frame = +2

Query: 359 LFKILEKYRPETEAVRKERLKKAAEANVCLRKNEPSPKRPNTLRAGTN 502
           LFK+L KYRPET+A +K RL   AE      K E   K+P  ++ G N
Sbjct: 4   LFKLLHKYRPETKAEKKARLSAKAEKK-AEGKEEAPGKKPMLVKYGIN 50


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 37/124 (29%), Positives = 50/124 (40%), Gaps = 4/124 (3%)
 Frame = +1

Query: 97   DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 276
            DR+KS+GR++      A +  K S R E++ +   P      R     A  E  SH  S 
Sbjct: 978  DRQKSNGRNSRSVSPSAVKRTKGSKRSESRSVSRSPERDRKGRD---SAKKERQSHSESP 1034

Query: 277  GCVTASSQSAAANQPVHPDIRLNHS----QRSVQDLGEIQARN*GSQERASKESRRSQCL 444
              VT SS+     +P H       S    +RS         R      R S+ SRRS   
Sbjct: 1035 QRVTKSSKERPRKRPRHQSRERRPSSSPPRRSRPQRTSPSPRRTPEDRRRSRGSRRSPSP 1094

Query: 445  PKKE 456
            PK+E
Sbjct: 1095 PKRE 1098


>SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2468

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +2

Query: 359 LFKILEKYRPET---EAVRKERLKKAAEANVCLRKNEPSPKRPNTLRAGTN 502
           LF + EK+  E    E   +++ KKAAEA     K E   K+    +AG++
Sbjct: 621 LFPVFEKHLSEEIDKEKKEEQKKKKAAEAKAAASKKEEDEKKAEASKAGSS 671


>SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 103 EKSSGRSTCGEES*AQEDCKPSIREENKELCY 198
           EK  G  TCG+ES    DC P  +E   E CY
Sbjct: 94  EKKEGCYTCGDESHIARDC-PEKKESPGESCY 124


>SB_4001| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0056)
          Length = 508

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +1

Query: 229 IPFRAMAEIYSHPA-SKGCVTASSQSAAANQPVHPDIRLNHSQRSVQDLGEIQA 387
           +P     +   HP  S GC T SS S  A  PV PD  + + Q     L E+ A
Sbjct: 65  LPVVTTVDSTGHPQLSSGCSTNSSSSQTAPFPVIPDTIIANMQSLFAKLDELYA 118


>SB_54431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1023

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 271 SKGCVTASSQSAAANQPVHPDIRLNHSQRSVQDLGEIQA 387
           S GC T SS S  A  PV PD  + + Q  +  L E+ A
Sbjct: 286 SSGCSTNSSSSQTARFPVIPDTIIANMQSLLPKLDELYA 324


>SB_21241| Best HMM Match : ErmC (HMM E-Value=1.1)
          Length = 562

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 371 LEKYRPETEAVRKERLKKAAEANVCLRKNEPSPKR 475
           L+  RP     R +R+K+ AE N+ L  +EP P++
Sbjct: 255 LQNQRPTLLRNRDKRIKRRAEDNLRLSADEPDPRQ 289


>SB_22639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 956

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 359  LFKILEKYRPETEAVRKERLKKAAEANVCLRKNEPSPK 472
            L K+LEK  PE +A+ +  L    +   C  KNEP  K
Sbjct: 892  LEKMLEKLHPECDALLQTPLVNFDKKGSCWYKNEPLGK 929


>SB_52208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 640

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 359 LFKILEKYRPETEAVRKERLKKAAEANVCLRKNEPSPK 472
           L K+LEK  PE +A+ +  L    +   C  KNEP  K
Sbjct: 249 LEKMLEKLHPECDALFQTPLVNFDKKGSCWYKNEPLGK 286


>SB_44491| Best HMM Match : Lipase_GDSL (HMM E-Value=4.5e-05)
          Length = 720

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 353 KGLFKILEKYRPETEAVRKERLKKAAEANVCLRKNEPSPKRP 478
           KGL  +LEK +   +A +K+R +   + N   +K++   K+P
Sbjct: 225 KGLKGVLEKIKQARKASKKKRARARKKHNKTSKKSKHVSKKP 266


>SB_25675| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
          Length = 485

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 365 KILEKYRPETEAVRKERLKKAAEANVCLRKNEPSPKR 475
           K++ K++PE   V K  +K     N+  ++ EP  K+
Sbjct: 230 KLVGKWQPEESTVEKAIIKPGKLTNIEFKETEPEEKQ 266


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,199,917
Number of Sequences: 59808
Number of extensions: 304439
Number of successful extensions: 802
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)