Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I12
         (506 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)           123   6e-29
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...   120   4e-28
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar...    33   0.084
At5g64290.1 68418.m08076 oxoglutarate/malate translocator, putat...    30   0.78 
At1g67890.1 68414.m07752 protein kinase family protein contains ...    30   0.78 
At5g64280.1 68418.m08075 oxoglutarate/malate translocator, putat...    28   4.2  
At3g44430.1 68416.m04774 expressed protein                             28   4.2  
At5g10470.1 68418.m01213 kinesin motor protein-related TH65 prot...    27   7.3  
At5g52400.1 68418.m06501 cytochrome P450 family protein similar ...    27   9.6  

>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score =  123 bits (297), Expect = 6e-29
 Identities = 60/113 (53%), Positives = 81/113 (71%), Gaps = 1/113 (0%)
 Frame = +2

Query: 167 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD*T 346
           LFE+R K F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLD  
Sbjct: 23  LFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKN 82

Query: 347 TAKGLFKILEKYRPETEAVRKERLKKAAEANVCLRKNEPS-PKRPNTLRAGTN 502
            A  LFK+L KYRPE +A +KERL K A+A     + +PS  K+P  ++ G N
Sbjct: 83  LATSLFKVLLKYRPEDKAAKKERLVKKAQAEA---EGKPSESKKPIVVKYGLN 132


>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score =  120 bits (290), Expect = 4e-28
 Identities = 59/113 (52%), Positives = 80/113 (70%), Gaps = 1/113 (0%)
 Frame = +2

Query: 167 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD*T 346
           LFE+R K F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLD  
Sbjct: 22  LFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKN 81

Query: 347 TAKGLFKILEKYRPETEAVRKERLKKAAEANVCLRKNEPS-PKRPNTLRAGTN 502
            A  LFKIL KYRPE +A +KERL   A+A     + +P+  K+P  ++ G N
Sbjct: 82  LATSLFKILLKYRPEDKAAKKERLLNKAQAEA---EGKPAESKKPIVVKYGLN 131


>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
           hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
           PF02854: MIF4G domain
          Length = 1186

 Score = 33.5 bits (73), Expect = 0.084
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +2

Query: 374 EKYRPETEAVRKERLKKAAEANVCLRKNEPSPKRPNT 484
           EK   E    R E +KK+ EA + LR+N  +P+RP++
Sbjct: 11  EKQDDEEALARLEEIKKSIEAKLTLRQNNLNPERPDS 47


>At5g64290.1 68418.m08076 oxoglutarate/malate translocator, putative
           similar to SWISS-PROT:Q41364 2-oxoglutarate/malate
           translocator, chloroplast precursor. [Spinach]{Spinacia
           oleracea}
          Length = 563

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -3

Query: 462 GSFFLRQTLASAAFFRRSFLTASVSGLYFSKILNRPLAVV*SNVWVNW 319
           GS+ ++     A      FLTA+   L   K+    L VV SN WV+W
Sbjct: 262 GSYLIQSQFQCAGNSSALFLTAAAQNLLCLKLAEE-LGVVISNPWVSW 308


>At1g67890.1 68414.m07752 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 765

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 350 AKGLFKILEKYRPETEAVRKERLKKAAEANVCLRKNEPSPKRPNTLRAGTNT 505
           A+ L K + +     E +++E  K    A +  R +  SPKRP+   +G  T
Sbjct: 8   AEKLLKKIRELEESQEDLKREMSKLKVSAEIKRRSHSSSPKRPSRRNSGEGT 59


>At5g64280.1 68418.m08075 oxoglutarate/malate translocator, putative
           similar to SWISS-PROT:Q41364 2-oxoglutarate/malate
           translocator, chloroplast precursor [Spinach]{Spinacia
           oleracea}
          Length = 549

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -3

Query: 462 GSFFLRQTLASAAFFRRSFLTASVSGLYFSKILNRPLAVV*SNVWVNW 319
           GSF ++  L  +       LT++   L   K L R + VV SN W+ W
Sbjct: 248 GSFLIQTQLQCSGASGAILLTSAAQNLLCLK-LAREVGVVISNPWITW 294


>At3g44430.1 68416.m04774 expressed protein 
          Length = 206

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 17/29 (58%), Positives = 19/29 (65%)
 Frame = -3

Query: 504 VLVPARRVFGLFGDGSFFLRQTLASAAFF 418
           V+V ARR F L GDGS  LRQ   +AA F
Sbjct: 142 VVVGARR-FLLMGDGSMALRQASKAAARF 169


>At5g10470.1 68418.m01213 kinesin motor protein-related TH65
           protein, Arabidopsis thaliana, EMBL:AJ001729; contains
           Pfam profile PF00225: Kinesin motor domain
          Length = 1273

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +2

Query: 281 VLQRRLKVPPPINQFTQTL-D*TTAKGLFKILEKYRPETEAVRKERLKKAAEANVCLRKN 457
           VL+   ++ P IN+  +   D  TAKG  K+  + RP  E      ++   +  +C+  +
Sbjct: 115 VLETEARISPLINEKKRLFNDLLTAKGNIKVFCRARPLFEDEGPSVIEFPGDCTICVNTS 174

Query: 458 EPSPKRP 478
           + +   P
Sbjct: 175 DDTLSNP 181


>At5g52400.1 68418.m06501 cytochrome P450 family protein similar to
           Cytochrome P450 72A1 (SP:Q05047) (cytochrome P450 lxxii
           hydroxylase) (ge10h) [Catharanthus roseus]
          Length = 519

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 382 VFLQDLEQTFGCGLI*CLGELVDWRRH 302
           VF +D E  FG GL+   G+  DW RH
Sbjct: 140 VFKKDREPMFGTGLVMVEGD--DWTRH 164


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,809,845
Number of Sequences: 28952
Number of extensions: 215915
Number of successful extensions: 554
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)