Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_I11
(511 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0649 - 18402976-18403220,18403305-18404499 47 1e-05
11_04_0234 + 15187065-15188241,15188316-15188494 42 4e-04
12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861 32 0.23
12_02_0239 - 16125105-16126025,16126966-16127415 30 0.94
12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718 29 2.2
03_05_1021 - 29750155-29750220,29750342-29750428,29750614-297507... 29 2.2
07_01_0365 + 2718707-2718839,2719335-2719405,2719512-2719955,272... 29 2.9
12_02_0237 - 16087083-16087201,16087531-16088341,16097713-16098156 28 3.8
12_02_0292 + 16979550-16980662,16983249-16983731 27 6.6
08_02_0113 - 12715888-12716181,12717443-12717602,12718327-127183... 27 6.6
05_03_0191 - 9521496-9521921 27 6.6
02_05_0272 - 27348537-27348728,27349035-27349192,27349292-273493... 27 6.6
07_03_1383 + 26172329-26172448,26172770-26172961 27 8.8
06_02_0206 + 13005863-13005966,13006918-13007080,13008534-130086... 27 8.8
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 46.8 bits (106), Expect = 1e-05
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Frame = +2
Query: 128 DVPS--IINLVDIVNIQAFDYYTP-ERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQN 298
D PS + +D VN+ AF P N + AP+Y +R +A + W+
Sbjct: 215 DYPSETVARSLDWVNVMAFGLRPPGAANANATAFDAPLY---DRASHYSASYGVVSWLDA 271
Query: 299 GAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADXGGEAGPYTKVQGLLSYPEI 463
G P K+V+GI GR+W L + + P+ A + G + G +SY E+
Sbjct: 272 GVPASKVVMGIPLYGRSWFLRNKANSGVGAPVVAAGPKQRG--SNATGAMSYAEV 324
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 41.5 bits (93), Expect = 4e-04
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Frame = +2
Query: 110 NSSIYFDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYW 289
++++ + + + + +D VNI F + N AD AP+Y ++D +A + W
Sbjct: 214 DTNLNYPIDDMSSSLDWVNIITFSLHK-NSNVTTAD--APLY---DKDSHFSASYGVISW 267
Query: 290 IQNGAPTHKLVLGISTTGRTWKL-DSDSEISGVPPIHADXGGEAGPYTKVQGLLSYPEI 463
+ G P KLV+GI GR+W L + D G P A G + ++ G+++Y EI
Sbjct: 268 LDAGLPPCKLVMGIPLFGRSWFLRNKDKNGLGAPT--AAAGTKQRKSNQI-GVIAYAEI 323
>12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861
Length = 443
Score = 32.3 bits (70), Expect = 0.23
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 35 LVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDI 160
LVR+ K + K NMQL++ +LP Y V I DI
Sbjct: 340 LVRKAKHEMKTKENMQLMVDLLPLWREKPYIKVERIFETCDI 381
>12_02_0239 - 16125105-16126025,16126966-16127415
Length = 456
Score = 30.3 bits (65), Expect = 0.94
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 35 LVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDI 160
LVR+ K + + NMQL++ V+P Y V I DI
Sbjct: 340 LVRKAKHKIRTEENMQLMVDVMPLWYEKPYIKVQRIFETCDI 381
>12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718
Length = 490
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 35 LVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDI 160
LVR+ K + + NMQL + +LP Y V I DI
Sbjct: 381 LVRKAKDEMKTEENMQLRVDLLPLWREKPYIKVQRIFEACDI 422
>03_05_1021 -
29750155-29750220,29750342-29750428,29750614-29750799,
29750965-29751059,29751179-29751284,29751378-29751452,
29751548-29751679,29751782-29751961,29752371-29752567,
29752651-29752906
Length = 459
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 317 LVLGISTTGRTWKLDSDSEISGVPPIHADXGGEAGPYTKVQGLLSYPEICAK 472
LV+G + T L E+SG+P D GP K+ L++ E+ K
Sbjct: 365 LVVGGWNSSNTSHLQEIGELSGIPSYWIDSEQRIGPGNKISYKLNHGELVEK 416
>07_01_0365 +
2718707-2718839,2719335-2719405,2719512-2719955,
2720660-2721802
Length = 596
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 252 ILYKTPTLL*ITGFKMVRLPTNLSLVSAPLDVRGSSI 362
++Y +PT++ + GF + LSLV+A L+ GS +
Sbjct: 293 VMYYSPTIVQLAGFASNQTALALSLVTAGLNAAGSLV 329
>12_02_0237 - 16087083-16087201,16087531-16088341,16097713-16098156
Length = 457
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 35 LVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDI 160
LVR+ K + ++ NMQL + +LP Y + I DI
Sbjct: 338 LVRKAKDEMMIEENMQLRVDLLPLWREKPYIKLQRIFETCDI 379
>12_02_0292 + 16979550-16980662,16983249-16983731
Length = 531
Score = 27.5 bits (58), Expect = 6.6
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +1
Query: 310 PQTCPWYQHHWTYVEARFR 366
P+ W QHHWT R R
Sbjct: 505 PEAKSWRQHHWTPARTRLR 523
>08_02_0113 -
12715888-12716181,12717443-12717602,12718327-12718368,
12718443-12718465,12718616-12720653,12720736-12720965,
12722207-12722329,12722438-12723010,12724684-12724733,
12726828-12726923,12726987-12727394,12727609-12727795
Length = 1407
Score = 27.5 bits (58), Expect = 6.6
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Frame = +2
Query: 74 NMQLVISVLPNVNSSIYFDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRD 253
++Q+++S P + F V + N + +V + A +T K+AD + Q R
Sbjct: 570 DLQILLSSGPY--EELNFGVEAAENALSVVKLIAILIFTVHNANKDADNQSYAEIVQRRV 627
Query: 254 PLQNADAA----INYWIQNGAPTHKLVLGI 331
LQNA AA + Y ++ A H + I
Sbjct: 628 LLQNAFAAAFEFVGYLLKRCAELHDVASSI 657
>05_03_0191 - 9521496-9521921
Length = 141
Score = 27.5 bits (58), Expect = 6.6
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +1
Query: 298 WCAYPQTCPWYQHHWTYVEARFR 366
W P+ W++ HWT AR R
Sbjct: 119 WQRRPEAEKWWRRHWTPARARLR 141
>02_05_0272 -
27348537-27348728,27349035-27349192,27349292-27349323,
27349420-27349514,27349614-27349687,27349800-27349878,
27350015-27350078,27350156-27350218,27350300-27350442,
27350566-27350703,27350792-27350913,27350993-27351158,
27351276-27351398,27351609-27351680,27351773-27351880,
27352481-27352597,27352727-27352865,27352974-27353080,
27353167-27353276,27353892-27354025,27354106-27354255,
27354329-27354549,27354647-27355318
Length = 1092
Score = 27.5 bits (58), Expect = 6.6
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Frame = +2
Query: 11 EHREGFTALVREMKQALNV-KPN---MQLVISVLPNVNSSIYFDVPSI 142
EH E AL ++A+N+ KP + L+I++LP+ N S+Y D+ I
Sbjct: 667 EHVE--RALKARYQEAMNILKPQGGELDLLIAILPDNNGSLYGDLKRI 712
>07_03_1383 + 26172329-26172448,26172770-26172961
Length = 103
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 202 PQRGGLHCTDLRTAEPRSSTKRRR 273
P RGG R A P SS +RRR
Sbjct: 10 PARGGTAAASARAAPPSSSRRRRR 33
>06_02_0206 +
13005863-13005966,13006918-13007080,13008534-13008632,
13008704-13008817,13009094-13009254,13009746-13009827,
13009972-13010057,13011563-13011742,13011913-13012424,
13012844-13013478
Length = 711
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +2
Query: 203 PKEADYTAPIYAPQNRDPLQNADAAI-NYWIQNGAP 307
P+ D + PIY P PL+N A+ N Q AP
Sbjct: 167 PQRPDSSVPIYTPPQTQPLRNLPPALRNTERQQEAP 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,167,602
Number of Sequences: 37544
Number of extensions: 298292
Number of successful extensions: 839
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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