Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_I11
(511 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 60 1e-09
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 4e-08
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 6e-06
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 47 1e-05
SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4) 29 2.9
SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0) 28 3.9
SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 28 5.1
SB_3622| Best HMM Match : K167R (HMM E-Value=1.5) 28 5.1
SB_16588| Best HMM Match : Tropomyosin (HMM E-Value=3.3) 28 5.1
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041) 27 6.8
>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 569
Score = 59.7 bits (138), Expect = 1e-09
Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 7/157 (4%)
Frame = +2
Query: 17 REGFTALVREMKQALNV------KPNMQLVISVLPN-VNSSIYFDVPSIINLVDIVNIQA 175
++ FT L +E+ A + +P + L +V ++V I ++D++N+ A
Sbjct: 265 KQRFTILCQELLDAFKLEAAQTNRPRLLLTAAVAAGKATIDKAYEVDKIGQILDLINLMA 324
Query: 176 FDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWK 355
+D P+ +TA + P + A YWI GAP K+ LG+ T GR +K
Sbjct: 325 YDL-RGMWEPETGHHTA-LEGPPGEE--LTVSFAAQYWIDKGAPASKIALGLGTYGRAFK 380
Query: 356 LDSDSEISGVPPIHADXGGEAGPYTKVQGLLSYPEIC 466
L +D G+ A+ G YT+ G L+Y EIC
Sbjct: 381 L-ADQTRHGL-KAPANGNPTRGQYTREPGFLAYYEIC 415
>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 54.8 bits (126), Expect = 4e-08
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 7/161 (4%)
Frame = +2
Query: 5 ESEHREGFTALVREMKQALNV------KPNMQLVISVLPNVNS-SIYFDVPSIINLVDIV 163
E +HR FT L +E+ A KP + L +V + +++ ++ +D +
Sbjct: 150 EDKHR--FTLLCQELLAAFETEAANTGKPRLLLTAAVSAGETTVKNGYEISALGQALDWI 207
Query: 164 NIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTG 343
N+ ++D + + + A + + DPL A++ WI G P++K+ LGI G
Sbjct: 208 NLMSYDLHGDWEDT--TGHHAAMDSSTG-DPL-TVTHAVDLWIAGGMPSNKIALGIPLYG 263
Query: 344 RTWKLDSDSEISGVPPIHADXGGEAGPYTKVQGLLSYPEIC 466
R++ L + ++ P A GG+ GPYTK G ++Y EIC
Sbjct: 264 RSFTLKTANKTLDAP---ATKGGQ-GPYTKEAGYIAYFEIC 300
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 47.6 bits (108), Expect = 6e-06
Identities = 35/146 (23%), Positives = 67/146 (45%), Gaps = 7/146 (4%)
Frame = +2
Query: 11 EHREGFTALVREM------KQALNVKPNMQLVISVLPNVNS-SIYFDVPSIINLVDIVNI 169
+ ++ FT L EM K A KP M L +V + ++V + ++D +N+
Sbjct: 532 QDKQHFTILCEEMLDAFKRKAADTDKPRMLLTAAVSAGHGTVDAAYEVHKLAGILDWINL 591
Query: 170 QAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRT 349
+D + P P +TA + P ++ A+ YW++ G P K+ LG++ G
Sbjct: 592 MTYDLHGPWE-PYTGHHTALVGPPGDK---LTVSYAVKYWMEKGMPCGKIALGMANYGHA 647
Query: 350 WKLDSDSEISGVPPIHADXGGEAGPY 427
++L ++ + P + + G + PY
Sbjct: 648 FELSDPTKTALGAPANVNK-GRSYPY 672
>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 829
Score = 46.8 bits (106), Expect = 1e-05
Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 11/136 (8%)
Frame = +2
Query: 125 FDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYW----- 289
+D+ I +D +N+ +D + PK +TA P D L AI YW
Sbjct: 584 YDIEGISKPLDWINVMTYDLHGTWE-PKTGHHTA--MGPDG-DKL-TLPFAIWYWMNNRD 638
Query: 290 ------IQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADXGGEAGPYTKVQGLLS 451
I+NG P +K+VLG+ T GR + L+S + G +AG YT +G L+
Sbjct: 639 TWEKPGIRNGMPANKIVLGLGTYGRAFGLES----------AGNNGLDAGKYTGAKGFLA 688
Query: 452 YPEICAKLINPNQNGK 499
Y EIC + +N K
Sbjct: 689 YFEICKMGLTVVENNK 704
>SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4)
Length = 184
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 419 GPYTKVQGLLSYPEIC 466
GPYT+ G LSY EIC
Sbjct: 16 GPYTRESGFLSYYEIC 31
>SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 915
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 335 TTGRTWKLDSDSEISGVPPIHADXGGEAGPYT-KVQGLLSYPEI 463
T G+TW E G+P + A GG A P + + +LS +I
Sbjct: 119 TAGKTWNASCFCEGRGMPLVGAVIGGAASPISLNIANVLSVNDI 162
>SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1303
Score = 27.9 bits (59), Expect = 5.1
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Frame = +2
Query: 125 FDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGA 304
+D+ +I+++VD + I A+D + KE P A N P + +++
Sbjct: 171 YDLKAIVDIVDFMVIMAYD---QQSQIKE----GPCIAKAN-SPYSQTLEGVQQYLKLNI 222
Query: 305 PTHKLVLGISTTGRTW---KLDSDSEISGVPPIH------ADXGGEAGPYTKVQGLL 448
+KLVLG+ G + ++D ++I + + +D G PY V LL
Sbjct: 223 SNNKLVLGLPWYGYDYPCEEIDEKNDICFIKKVPFRGVNCSDAAGTQIPYATVNDLL 279
>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 628
Score = 27.9 bits (59), Expect = 5.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 289 DSKWCAYPQTCPWYQHHWTYVEA 357
D + C+YP T PW WT + +
Sbjct: 80 DERNCSYPTTGPWTTRPWTPISS 102
>SB_3622| Best HMM Match : K167R (HMM E-Value=1.5)
Length = 441
Score = 27.9 bits (59), Expect = 5.1
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = -1
Query: 223 SVVRLFGVTFRCII--VKCLDVDNVDQVYDAWDVKVNGAIYVWQNADN*LHIGFYIECLF 50
SV F T + +I + C DV+ V + + V VNG QNA+ + + F + F
Sbjct: 252 SVENRFSGTNKALIDAIVCQDVEEVKSILETEAVNVNG-----QNAEGFVPLEFAVMLGF 306
Query: 49 HLTYKSGEAF 20
H K +AF
Sbjct: 307 HHIAKMLQAF 316
>SB_16588| Best HMM Match : Tropomyosin (HMM E-Value=3.3)
Length = 430
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 232 LRTAEPRSSTKRRRCYKLLD-SKWCAYPQTCPWYQHHWTYVEAR 360
LR + PRS ++ + K+ ++P P +HHWT E R
Sbjct: 26 LRNSTPRSKARKPLQFTSPSHGKFKSFPVKSPVRRHHWTLEEER 69
>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
Length = 942
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 262 KRRRCYKLLDSKWCAYPQTCP 324
K RCY L DSK C P P
Sbjct: 327 KAPRCYNLCDSKTCIIPTKAP 347
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,269,958
Number of Sequences: 59808
Number of extensions: 345454
Number of successful extensions: 889
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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