Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I10
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    31   0.063
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    26   1.8  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   4.1  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    24   7.2  
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    24   7.2  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    24   7.2  
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    24   9.6  

>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 31.1 bits (67), Expect = 0.063
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -3

Query: 327 TFKTTLRLPEETDDATLKRSLIKSR*KFRATVQRDTIASRAQWCHTCLC 181
           +F + L++P +T+DA  K+ LI     FR       I +   WC  CLC
Sbjct: 325 SFISLLKIPLKTNDAFSKK-LITMLSNFREGDSAKNIPTHKLWCTYCLC 372


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 190 CVTPLGATSNCVSLYSCSELLTAFDQRPLQSSVVS-FLRQSQCGF 321
           C++P+  +S+ +S YSC    T      L++ + S FLR   C F
Sbjct: 332 CISPINHSSDNLSDYSCVSDTTTEILSNLENPLSSNFLRNDLCKF 376


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 376 VYFVEKAMARSTLWACNLQNHIATA 302
           + F+E+ + R T W+C L +  A++
Sbjct: 549 ISFLERELRRRTFWSCFLMDRYASS 573


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 265 DQKPLKVPSNCTARHNC*SRPV 200
           D KP K   +C+  H+  SRPV
Sbjct: 331 DHKPWKHEEHCSCHHDKFSRPV 352


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -3

Query: 282 TLKRSLIKSR*KFRATVQRDTIASRAQWCHTCL 184
           TL  SLI         V R+T+ S   W HTCL
Sbjct: 122 TLSCSLIVEGVLIIINVWRETLDSFLVWRHTCL 154


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +2

Query: 170 VMFLQRHV*HHWARL 214
           +++LQR++ HHW+ L
Sbjct: 58  LIYLQRYIVHHWSPL 72


>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 306 LPEETDDATLKRSLIK 259
           LPEE DDA + R LI+
Sbjct: 74  LPEERDDAEVTRDLIE 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,466,402
Number of Sequences: 5004
Number of extensions: 26879
Number of successful extensions: 77
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)