Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I10
         (386 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1452 - 30255093-30255460,30255593-30255777,30255866-302562...    29   1.7  
10_01_0211 - 2268191-2268247,2268916-2268944,2270892-2271777           28   2.2  
08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413     27   5.2  

>06_03_1452 -
           30255093-30255460,30255593-30255777,30255866-30256281,
           30256726-30256934,30257542-30257700,30257792-30257810
          Length = 451

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 129 KRISFVFCIHSNMESCSYRDMCDTTGRD*QLCLAVQLLGTFNGF 260
           K  +F++C+H      S  DM D   +  Q C  V   G F+G+
Sbjct: 122 KATTFLYCVHCGFMKNSGADMDDVDVKYIQKCKFVVASGIFDGY 165


>10_01_0211 - 2268191-2268247,2268916-2268944,2270892-2271777
          Length = 323

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 234 VQRDTIASRAQWCHTCLCKNMTPY*SEYKTQN*SFSHFGSQNTFLTTV 91
           +Q D++ SR  W  T +  ++ PY S Y   N     FG  +  LT +
Sbjct: 267 LQIDSLQSRKLW-ETNIMSSLHPYASTYVAANYGLRKFGKVSRLLTVI 313


>08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413
          Length = 533

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 169 SHVLTETCVTPLGATSNCVSLYSCSELLTAFDQRPLQSSVVSFL 300
           +HVL +  +  + AT   ++ YSCS    A     + S V S++
Sbjct: 448 AHVLRDHAIRQVDATQLQITCYSCSHKFRARAAAMISSDVASYV 491


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,242,597
Number of Sequences: 37544
Number of extensions: 161813
Number of successful extensions: 338
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)