Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I10
         (386 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50231| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10)                 27   7.1  
SB_58879| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.3  
SB_39121| Best HMM Match : Band_41 (HMM E-Value=1.7e-08)               26   9.3  
SB_7920| Best HMM Match : Sec15 (HMM E-Value=2.3)                      26   9.3  
SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.3  

>SB_50231| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
 Frame = +1

Query: 157 TLIWSHVLTETCVTPLGATSNCVSLYSCSELLTA----FDQRPLQSSVVSF---LRQSQC 315
           TL W+  ++ + V PLG  S  +S Y C    T     + +    S+   F   L  + C
Sbjct: 171 TLAWADAVSASLVAPLGIPSVMLSWYDCPSYQTLHHRYYPRTAADSAGWDFAEKLSSAVC 230

Query: 316 GFEG--YTPRVCC 348
           G  G   +PR+ C
Sbjct: 231 GVHGAASSPRISC 243


>SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10)
          Length = 718

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 136 LVLCFVFTLIWSHVLTETCVTPLGATSNCV 225
           LV+CF F+ +  HV+    VT +G  S  V
Sbjct: 224 LVVCFRFSSVAVHVINNALVTYVGTESGSV 253


>SB_58879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1786

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 197 HHWARLAIVSRCTVARNF*RLLIKDLFRVASSVSSG 304
           HH  +L++VS+CT+  N   +L     +  S ++ G
Sbjct: 812 HHSCKLSVVSKCTLGENSLSVLPPMFIKGLSELAKG 847


>SB_39121| Best HMM Match : Band_41 (HMM E-Value=1.7e-08)
          Length = 558

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 60  RINNRE*FRIRQWSRKCFVIQNGKRISFVFCIHSNMES 173
           RI N++   +R   R CFV++      ++ C  ++M+S
Sbjct: 76  RIPNKQFLSLRSGQRGCFVVKFSNNGRYLACACADMDS 113


>SB_7920| Best HMM Match : Sec15 (HMM E-Value=2.3)
          Length = 551

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 260 LIKDLFRVASSVSSGSRNVVLKVTRPECAAG 352
           +I  LFR   S S+ S N  ++  R EC AG
Sbjct: 169 IIVHLFRFEGSSSAISMNAYIRERRQECMAG 199


>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 290  SVSSGSRNVVLKVTRPECAAGHCLL 364
            S SSG   VV+K T+P  AA +C L
Sbjct: 1210 SDSSGDEEVVVKNTKPALAALNCYL 1234


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,152,634
Number of Sequences: 59808
Number of extensions: 205907
Number of successful extensions: 518
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)