Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I10
         (386 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13760.1 68416.m01736 DC1 domain-containing protein contains ...    33   0.067
At3g23980.1 68416.m03012 dentin sialophosphoprotein-related cont...    27   4.4  

>At3g13760.1 68416.m01736 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 33.1 bits (72), Expect = 0.067
 Identities = 23/70 (32%), Positives = 31/70 (44%)
 Frame = -2

Query: 280 SEEVFDQKPLKVPSNCTARHNC*SRPVVSHMSL*EHDSILE*IQNTKLILFPFWITKHFL 101
           S+E  D  P KV      +H C       H+ L +HD   E  +  +  +FP  I  H  
Sbjct: 329 SDENEDIAPFKVVGEDLIKHFCHKH----HLRLKKHDGFREAEKQCRACVFP--IVSHQF 382

Query: 100 DHCLILNHSL 71
            HC I N+SL
Sbjct: 383 YHCKICNYSL 392


>At3g23980.1 68416.m03012 dentin sialophosphoprotein-related
           contains weak similarity to Dentin sialophosphoprotein
           precursor (Swiss-Prot:Q9NZW4) [Homo sapiens]
          Length = 736

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = -3

Query: 354 WPAAHSGRVTFKTTLRLPEETDDATLKRSLIKSR*KFRATVQRDTIASRA 205
           +PAA+     F T   +P++ DD T     I+   + + ++QRD  ASRA
Sbjct: 337 YPAANGVMPGF-TDFSMPKQNDDFTALEQHIEDLTQEKFSLQRDLDASRA 385


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,609,158
Number of Sequences: 28952
Number of extensions: 136450
Number of successful extensions: 330
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)