BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_I09 (469 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 25 4.4 SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 25 4.4 SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 25 4.4 SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 25 5.8 >SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 Brl1|Schizosaccharomyces pombe|chr 3|||Manual Length = 692 Score = 25.4 bits (53), Expect = 4.4 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +3 Query: 144 VEGYSYAVETSDGKQAQETGQLKNVGTENEAIS 242 +EGYS + D + +TG++ NV E E IS Sbjct: 399 LEGYSNRLCIWDRIERSKTGEMNNVLDEKEEIS 431 >SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1316 Score = 25.4 bits (53), Expect = 4.4 Identities = 16/38 (42%), Positives = 19/38 (50%) Frame = -3 Query: 299 VGHGVGDTVKADVRELAADGDSFVFSTNVLQLTGFLGL 186 V HG+ + V EL DG STN Q+TG L L Sbjct: 14 VNHGIDNIY---VLELDLDGSVLFASTNFSQITGSLEL 48 >SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mcl1|Schizosaccharomyces pombe|chr 1|||Manual Length = 815 Score = 25.4 bits (53), Expect = 4.4 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Frame = +3 Query: 174 SDGKQAQETGQL--KNVGTENEAISVRGQFSYVGLDGVTYTV 293 SD +Q+Q L + ENE I+ G S + LDG +Y V Sbjct: 335 SDDEQSQNVNDLDGNSANEENEFINHDGLDSSLDLDGDSYMV 376 >SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 926 Score = 25.0 bits (52), Expect = 5.8 Identities = 10/14 (71%), Positives = 10/14 (71%) Frame = +2 Query: 335 PPPPIRLRLSYQHT 376 PPPPI L LSY T Sbjct: 182 PPPPINLPLSYSAT 195 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,435,422 Number of Sequences: 5004 Number of extensions: 20405 Number of successful extensions: 49 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 49 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 178394480 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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