Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_I09
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    25   4.4  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    25   4.4  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    25   4.4  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    25   5.8  

>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 144 VEGYSYAVETSDGKQAQETGQLKNVGTENEAIS 242
           +EGYS  +   D  +  +TG++ NV  E E IS
Sbjct: 399 LEGYSNRLCIWDRIERSKTGEMNNVLDEKEEIS 431


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -3

Query: 299 VGHGVGDTVKADVRELAADGDSFVFSTNVLQLTGFLGL 186
           V HG+ +     V EL  DG     STN  Q+TG L L
Sbjct: 14  VNHGIDNIY---VLELDLDGSVLFASTNFSQITGSLEL 48


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 174 SDGKQAQETGQL--KNVGTENEAISVRGQFSYVGLDGVTYTV 293
           SD +Q+Q    L   +   ENE I+  G  S + LDG +Y V
Sbjct: 335 SDDEQSQNVNDLDGNSANEENEFINHDGLDSSLDLDGDSYMV 376


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +2

Query: 335 PPPPIRLRLSYQHT 376
           PPPPI L LSY  T
Sbjct: 182 PPPPINLPLSYSAT 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,435,422
Number of Sequences: 5004
Number of extensions: 20405
Number of successful extensions: 49
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)